| Age | Commit message (Expand) | Author |
|---|
| 2024-02-06 | gnu: python-traittypes: Simplify package....* gnu/packages/python-science.scm (python-traittypes) [build-system]:
Swap to pyproject-build-system.
[arguments]: Move excluded tests to <#:test-flags>. Use standard 'check
phase.
Change-Id: I4cab0c94036a7e5f0851edf2833dfac2f675d2a0
| Sharlatan Hellseher |
| 2024-02-06 | gnu: python-pynrrd: Update to 1.0.0....* gnu/packages/python-science.scm (python-pynrrd): Update to 1.0.0.
[arguments]: Keep 'ensure-no-mtimes-pre-1980 phase as it's building with
it successfully.
[propagated-inputs]: Add python-nptyping and python-typing-extensions.
Change-Id: Ic4dcd0825e71d3eb4acd39694bee9e22e8485f9f
| Sharlatan Hellseher |
| 2024-02-06 | gnu: python-pynrrd: Improve description....* gnu/packages/python-science.scm (python-pynrrd) [description]: Add
definition of NRRD.
Change-Id: I0335df0eb4be600d81799da64374ddfb49b06720
| Sharlatan Hellseher |
| 2024-02-06 | gnu: Add python-pynrrd....* gnu/packages/python-science.scm (python-pynrrd): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Antero Mejr |
| 2024-02-01 | gnu: Add python-pandarallel....* gnu/packages/python-science.scm (python-pandarallel): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Wiktor Żelazny |
| 2024-01-30 | gnu: python-scipy: Enable building on more architectures....* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]:
Only include python-jupytext on systems where it is supported.
Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
| Efraim Flashner |
| 2024-01-29 | gnu: Add python-pyjanitor....* gnu/packages/python-science.scm (python-pyjanitor): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Troy Figiel |
| 2024-01-29 | gnu: Add python-unyt....* gnu/packages/python-science.scm (python-unyt): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Troy Figiel |
| 2024-01-28 | gnu: python-pyamg: Regenerate bundled files....* gnu/packages/python-science.scm (python-pyamg) [source]: Delete
auto-generated files.
[arguments] <#:phases>: Add 'amg-core-bind-them phase to
re-generate *_bind.cpp files deleted in snippet.
[native-inputs]: Add python-cppheaderparser and python-pyyaml.
[description]: Improve style, omit implementation details.
Change-Id: I6f68914cd912e6f4592e51c21b129847e73be847
| Sharlatan Hellseher |
| 2024-01-28 | gnu: python-trimesh: Enable tests....* gnu/packages/python-science.scm (python-trimesh): Enable tests and
apply new package style.
[source]: Use git checkout which has working test suit.
[arguments] <#:test-flags>: Disable tests requiring optional Python
modules.
[propagated-inputs]: Add python-chardet, python-colorlog python-httpx
python-jsonschema python-lxml python-networkx python-pillow
python-requests python-rtree python-scipy python-setuptools
python-shapely python-sympy and python-xxhash.
Change-Id: I1aa363053c2d736bc44b8f9071c637256cc2d952
| Sharlatan Hellseher |
| 2024-01-28 | gnu: python-trimesh: Update to 4.0.10....* gnu/packages/python-science.scm (python-trimesh): Update to 4.0.10.
[build-system]: Swap to pyproject-build-system.
Change-Id: I757b4c27db9969d42021434883a057debbbc83fd
| Sharlatan Hellseher |
| 2024-01-24 | gnu: python-xarray-einstats: Update to 0.7.0....* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.7.0.
Change-Id: Iddd1fca8c37f05a928d20b90f9f95814f31435b2
| Vinicius Monego |
| 2024-01-24 | gnu: python-pyts: Update to 0.13.0....* gnu/packages/python-science.scm (python-pyts): Update to 0.13.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; enable all tests.
[propagated-inputs]: Remove python-matplotlib.
Change-Id: Iafcc047d8bb14e1eef514fd92aa53f8fda38eab0
| Ricardo Wurmus |
| 2024-01-23 | gnu: python-pydicom: Update to 2.4.4....* gnu/packages/python-science.scm (python-pydicom): Update to 2.4.4.
Change-Id: I996115fb3bdf0bd61d2b2dcdb2500b31ce104597
| Sharlatan Hellseher |
| 2024-01-23 | gnu: python-pydicom: Simplify package style....* gnu/packages/python-science.scm (python-pydicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.
Change-Id: I7ef413ea2da6cbb83eb33424c559f7ac5ed549cb
| Sharlatan Hellseher |
| 2024-01-23 | gnu: python-pynetdicom: Simplify package style....* gnu/package/python-science.scm (python-pynetdicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.
Change-Id: If4e80d06edb0080685d0695f30abc2f9db669f45
| Sharlatan Hellseher |
| 2024-01-23 | gnu: Add python-pynetdicom....* gnu/packages/python-science.scm (python-pynetdicom): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Antero Mejr |
| 2024-01-23 | gnu: python-scipy: Update to 1.12.0....* gnu/packages/python-science.scm (python-scipy): Update to 1.12.0.
[propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy,
python-numpydoc, python-pydata-sphinx-theme, python-pydevtool,
python-rich-click, python-sphinx, python-threadpoolctl, and
python-typing-extensions; remove python-pyparsing.
[native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov,
and python-pytest-xdist; remove python-threadpoolctl.
Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210
| Ricardo Wurmus |
| 2024-01-22 | gnu: python-tdda: Remove relax-requirements phase....* gnu/packages/python-science.scm (python-tdda)[arguments]<#:phases>: Remove relax-requirements phase.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Troy Figiel |
| 2024-01-21 | gnu: python-scikit-fem: Update to 9.0.1....* gnu/packages/python-science.scm (python-scikit-fem): Update to 9.0.1.
[arguments]<#:test-flags>: Drop it to activate all tests.
[native-inputs]: Add python-autograd, python-pyamg, and python-shapely.
Change-Id: Ic4706196026bd5756b4db8230b15efacdca7d463
| Sharlatan Hellseher |
| 2024-01-21 | gnu: Add python-pyamg....* gnu/packages/python-science.scm (python-pyamg): New variable.
Change-Id: Ibf39fecd14d4e6fd72078b217737e5e5cbbf2321
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Felix Gruber |
| 2024-01-20 | gnu: python-pandera: Fix build....* gnu/packages/python-science.scm (python-pandera): Fix build.
[source]: Delete tests/modin directory.
[native-inputs]: Remove python-modin.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Troy Figiel |
| 2024-01-20 | gnu: python-pandas-stubs: Update to 1.5.3.230321....* gnu/packages/python-science.scm (python-pandas-stubs): Update to
1.5.3.230321.
[arguments]<#:test-flags>: Ignore tests that require a version of
python-pyarrow with ORC integration.
[native-inputs]: Add python-odfpy.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Troy Figiel |
| 2024-01-18 | gnu: python-plotnine: Reformat with guix style....* gnu/packages/python-science.scm (python-plotnine): Reformat with guix style.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Troy Figiel |
| 2024-01-18 | gnu: python-plotnine: Fix build....* gnu/packages/python-science.scm (python-plotnine): Fix build.
[arguments]<#:test-flags>: Add test_custom_shape to ignored tests.
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Troy Figiel |
| 2024-01-17 | gnu: Add python-pandera....* gnu/packages/python-science.scm (python-pandera): New variable.
| Troy Figiel |
| 2024-01-17 | gnu: Add python-pandas-stubs....* gnu/packages/python-science.scm (python-pandas-stubs): New variable.
| Troy Figiel |
| 2024-01-16 | gnu: python-deepdish: Fix build....* gnu/packages/python-science.scm (python-deepdish): Fix build.
[build-system]: Swap to pyproject-build-system.
[arguments]<#:test-flags>: Silent failing tests.
Change-Id: I4c4df66fc80434aaf5b95a7a62b83e0c1c02a4c6
| Sharlatan Hellseher |
| 2024-01-16 | gnu: python-xarray: Update to 2023.12.0....* gnu/packages/python-science.scm (python-xarray): Update to 2023.12.0.
[arguments]: Ignore one test file.
[propagated-inputs]: Add python-packaging.
Change-Id: I6b70f59670f7bc8b56787fe3436579db8ac113bb
| Ricardo Wurmus |
| 2024-01-16 | gnu: python-pandas: Update to 1.5.3....* gnu/packages/python-science.scm (python-pandas): Update to 1.5.3.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; move test flags to #:test-flags; add phase
'patch-build-system; fix substitution of "which" executable; remove
'enable-parallel-build; remove custom 'check phase; add 'pre-check phase.
[propagated-inputs]: Add python-matplotlib.
[native-inputs]: Replace python-cython with python-cython-0.29.35.
Change-Id: I9d09971f707b925f469e29be67fe040c181314ff
| Ricardo Wurmus |
| 2024-01-16 | gnu: python-scikit-optimize: Make compatible with latest sklearn....* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Add
snippet to fix outdated use of "max_features" option.
Change-Id: I4272ffc82b4951315b74b4adee27527e8d513fca
| Ricardo Wurmus |
| 2024-01-16 | gnu: python-scikit-image: Update to 0.22.0....* gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; remove custom 'build phase; simplify 'check
phase; enable all tests.
[propagated-inputs]: Add python-lazy-loader.
[native-inputs]: Add meson-python, python-numpydoc, python-packaging, and
python-wheel.
Change-Id: I00ede026a7941eae36157106f753a21fb64099c3
| Ricardo Wurmus |
| 2024-01-16 | gnu: python-scipy: Update to 1.11.4....* gnu/packages/python-science.scm (python-scipy): Update to 1.11.4.
[arguments]: Use mesonpy backend.
[inputs]: Replace pybind11 with pybind11-2.10.
[native-inputs]: Add python-click, python-doit, python-pooch, and
python-pydevtool; replace python-cython with python-cython-0.29.35.
Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5
| Ricardo Wurmus |
| 2024-01-10 | gnu: python-distributed: Disable breaking test....This test times out since the merge of the mesa-updates branch.
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_tell_workers_when_peers_have_left.
Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
| Ricardo Wurmus |
| 2023-12-15 | gnu: python-vaex-core: Add missing input....* gnu/packages/python-science.scm (python-vaex-core)[propagated-inputs]: Add
python-click.
Change-Id: Id91e925832ed107d5b346ba513a9825dc31481f6
| Ricardo Wurmus |
| 2023-12-05 | gnu: python-pytensor: Update to 2.18.1....* gnu/packages/python-science.scm (python-pytensor): Update to 2.18.1.
Change-Id: I7992d8a00c378c008995df3d026c3e05c235ae6d
| Vinicius Monego |
| 2023-12-05 | gnu: python-gpy: Adjust for newer python....* gnu/packages/python-science.scm (python-gpy)[source]: Add snippet to
adjust python module imports.
Change-Id: I0772febb97d75e0a0caa331913c9e7453d11e70d
| Efraim Flashner |
| 2023-12-04 | gnu: Add python-pyfma....* gnu/packages/python-science.scm (python-pyfma): New variable.
Change-Id: I354d3d56f2799c8c9ac9b868fcacbf88dcc5c25d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2023-12-04 | gnu: Add python-meshzoo....* gnu/packages/python-science.scm (python-meshzoo): New variable.
Change-Id: Ia41d62ebd6c4cb3c22ebe0668c36279a9ca191ac
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2023-11-15 | gnu: Add python-tdda....* gnu/packages/python-science.scm (python-tdda): New variable.
Change-Id: I456aa236b3348e5b990289d8a381c2d5276a12f1
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Troy Figiel |
| 2023-11-03 | gnu: python-pytensor: Update to 2.17.3....* gnu/packages/python-science.scm (python-pytensor): Update to 2.17.3.
Change-Id: I2843aca1df4d43883bf643e6e363bd3700202c45
| Vinicius Monego |
| 2023-11-03 | gnu: Add python-salib....* gnu/packages/python-science.scm (python-salib): New variable.
| Vinicius Monego |
| 2023-10-17 | gnu: python-trimesh: Update to 3.23.5....* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| Paul A. Patience |
| 2023-10-17 | gnu: python-pyvista: Update to 0.42.3....* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| Paul A. Patience |
| 2023-10-08 | gnu: python-distributed: Disable failing tests....* gnu/packages/python-science.scm (python-distributed): Disable failing tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Nicolas Graves |
| 2023-09-30 | gnu: Add python-numpoly....* gnu/packages/python-science.scm (python-numpoly): New variable.
| Vinicius Monego |
| 2023-08-05 | gnu: python-pytensor: Update to 2.14.2....* gnu/packages/python-science.scm (python-pytensor): Update to 2.14.2.
[native-inputs]: Add python-pytest-mock.
| Vinicius Monego |
| 2023-07-29 | gnu: Add python-scikit-fem....* gnu/packages/python-science.scm (python-scikit-fem): New variable.
| Vinicius Monego |
| 2023-07-15 | gnu: python-distributed: Update to 2023.7.0....* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0.
| Ricardo Wurmus |
| 2023-07-13 | gnu: Add python-plotnine....* gnu/packages/python-science.scm (python-plotnine): New variable.
| Ricardo Wurmus |
