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2023-12-15gnu: python-vaex-core: Add missing input.•••* gnu/packages/python-science.scm (python-vaex-core)[propagated-inputs]: Add python-click. Change-Id: Id91e925832ed107d5b346ba513a9825dc31481f6 Ricardo Wurmus
2023-12-05gnu: python-pytensor: Update to 2.18.1.•••* gnu/packages/python-science.scm (python-pytensor): Update to 2.18.1. Change-Id: I7992d8a00c378c008995df3d026c3e05c235ae6d Vinicius Monego
2023-12-05gnu: python-gpy: Adjust for newer python.•••* gnu/packages/python-science.scm (python-gpy)[source]: Add snippet to adjust python module imports. Change-Id: I0772febb97d75e0a0caa331913c9e7453d11e70d Efraim Flashner
2023-12-04gnu: Add python-pyfma.•••* gnu/packages/python-science.scm (python-pyfma): New variable. Change-Id: I354d3d56f2799c8c9ac9b868fcacbf88dcc5c25d Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2023-12-04gnu: Add python-meshzoo.•••* gnu/packages/python-science.scm (python-meshzoo): New variable. Change-Id: Ia41d62ebd6c4cb3c22ebe0668c36279a9ca191ac Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2023-11-15gnu: Add python-tdda.•••* gnu/packages/python-science.scm (python-tdda): New variable. Change-Id: I456aa236b3348e5b990289d8a381c2d5276a12f1 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Troy Figiel
2023-11-03gnu: python-pytensor: Update to 2.17.3.•••* gnu/packages/python-science.scm (python-pytensor): Update to 2.17.3. Change-Id: I2843aca1df4d43883bf643e6e363bd3700202c45 Vinicius Monego
2023-11-03gnu: Add python-salib.•••* gnu/packages/python-science.scm (python-salib): New variable. Vinicius Monego
2023-10-17gnu: python-trimesh: Update to 3.23.5.•••* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-17gnu: python-pyvista: Update to 0.42.3.•••* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-08gnu: python-distributed: Disable failing tests.•••* gnu/packages/python-science.scm (python-distributed): Disable failing tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Nicolas Graves
2023-09-30gnu: Add python-numpoly.•••* gnu/packages/python-science.scm (python-numpoly): New variable. Vinicius Monego
2023-08-05gnu: python-pytensor: Update to 2.14.2.•••* gnu/packages/python-science.scm (python-pytensor): Update to 2.14.2. [native-inputs]: Add python-pytest-mock. Vinicius Monego
2023-07-29gnu: Add python-scikit-fem.•••* gnu/packages/python-science.scm (python-scikit-fem): New variable. Vinicius Monego
2023-07-15gnu: python-distributed: Update to 2023.7.0.•••* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0. Ricardo Wurmus
2023-07-13gnu: Add python-plotnine.•••* gnu/packages/python-science.scm (python-plotnine): New variable. Ricardo Wurmus
2023-06-29gnu: python-pandas-flavor: Update to 0.5.0.•••* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.5.0. [propagated-inputs]: Add python-lazy-loader and python-packaging. [home-page]: Update. Arun Isaac
2023-06-29gnu: python-distributed: Disable timeout test.•••* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_nanny_timeout, because it times out. Ricardo Wurmus
2023-06-25gnu: python-trimesh: Update to 3.22.1.•••* gnu/packages/python-science.scm (python-trimesh): Update to 3.22.1. [arguments]<#:phases>: Update path in 'fix-build' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2023-06-25gnu: Add python-pytensor.•••* gnu/packages/python-science.scm (python-pytensor): New variable. Vinicius Monego
2023-06-25gnu: Add python-xarray-einstats.•••* gnu/packages/python-science.scm (python-xarray-einstats): New variable. Vinicius Monego
2023-06-25gnu: python-xarray: Update to 2023.6.0.•••* gnu/packages/python-science.scm (python-xarray): Update to 2023.6.0. [build-system]: Switch to pyproject-build-system. [arguments]: Do not override the check phase. Vinicius Monego
2023-06-25gnu: Add python-einops.•••* gnu/packages/python-science.scm (python-einops): New variable. Vinicius Monego
2023-06-20gnu: python-pyvista: Update to 0.39.1.•••* gnu/packages/python-science.scm (python-pyvista): Update to 0.39.1. [propagated-inputs]: Add python-pooch, remove python-appdirs. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-05-11gnu: python-distributed: Update to 2023.4.1.•••* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1. [source]: Remove snippet. [arguments]: Update build phase 'versioneer; restore 'sanity-check phase; simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-importlib-metadata. Ricardo Wurmus
2023-05-10gnu: python-scikit-optimize: Fix build with newer numpy and sklearn.•••* gnu/packages/patches/python-scikit-optimize-1148.patch, gnu/packages/patches/python-scikit-optimize-1150.patch: New patches. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with git and apply patches. Ricardo Wurmus
2023-05-08gnu: python-bottleneck: Honor #:tests? flag.•••* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust custom 'check phase to honor the #:tests? flag. Efraim Flashner
2023-05-08gnu: python-bottleneck: Update to 1.3.7.•••* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7. Efraim Flashner
2023-04-26gnu: python-distributed: Fix build.•••* gnu/packages/python-science.scm (python-distributed)[build-system]: Use pyproject-build-system. [arguments]: Hide deprecation warnings from tornado, because they break almost all tests; disable three more tests. Ricardo Wurmus
2023-04-14Merge branch 'master' into core-updates.•••Conflicts: gnu/local.mk gnu/packages/build-tools.scm gnu/packages/certs.scm gnu/packages/check.scm gnu/packages/compression.scm gnu/packages/cups.scm gnu/packages/fontutils.scm gnu/packages/gnuzilla.scm gnu/packages/guile.scm gnu/packages/ibus.scm gnu/packages/image-processing.scm gnu/packages/linux.scm gnu/packages/music.scm gnu/packages/nss.scm gnu/packages/pdf.scm gnu/packages/python-xyz.scm gnu/packages/qt.scm gnu/packages/ruby.scm gnu/packages/shells.scm gnu/packages/tex.scm gnu/packages/video.scm gnu/packages/vulkan.scm gnu/packages/web.scm gnu/packages/webkit.scm gnu/packages/wm.scm Maxim Cournoyer
2023-04-11gnu: python-scipy: Update to 1.10.1.•••* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1. [build-system]: Use pyproject-build-system. [arguments]: Add #:build-backend argument. Remove loosen-requirements, build and install phases. [native-inputs]: Remove python-pypa-build. Maxim Cournoyer
2023-03-24gnu: python-scikit-allel: Use pyproject-build-system.•••* gnu/packages/python-science.scm (python-scikit-allel): Move up to create alphabetic order. [build-system]: Use pyproject-build-system. [arguments]: Provide test flags instead of overriding 'check phase; split out build step into new 'build-ext phase. Disable roh_mhmm tests. Ricardo Wurmus
2023-03-24gnu: Add python-scikit-optimize.•••* gnu/packages/python-science.scm (python-scikit-optimize): New variable. Ricardo Wurmus
2023-03-21gnu: Add python-libneuroml.•••* gnu/packages/python-science.scm (python-libneuroml): New variable. Lars-Dominik Braun
2023-03-21gnu: Add python-pylems.•••* gnu/packages/python-science.scm (python-pylems): New variable. Lars-Dominik Braun
2023-01-08gnu: Add python-pydicom.•••* gnu/packages/python-science.scm (python-pydicom): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Antero Mejr
2022-12-05gnu: python-sgp4: Move to astronomy.•••* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm. [description]: Expand description, annotate acronyms, add link to CelesTrak. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher
2022-12-05gnu: python-sgp4: Update to 2.21.•••The latest version passes build on aarch64-linux system. * gnu/packages/python-science.scm (python-sgp4): Update to 2.21. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher
2022-12-02gnu: python-msgpack-numpy: Update to 0.4.8.•••* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8. Navid Afkhami
2022-11-11gnu: Add python-tspex.•••* gnu/packages/python-science.scm (python-tspex): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami
2022-11-04gnu: Add python-pyts.•••* gnu/packages/python-science.scm (python-pyts): New variable. Ricardo Wurmus
2022-10-18gnu: Add python-simple-pid.•••* gnu/packages/python-science.scm (python-simple-pid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> jgart
2022-09-29Merge branch 'master' into stagingMarius Bakke
2022-09-28gnu: Add python-simplespectral.•••* gnu/packages/python-science.scm (python-simplespectral): New variable. Guillaume Le Vaillant
2022-09-27Merge branch 'master' into staging.•••With resolved conflicts in: gnu/local.mk gnu/packages/crates-io.scm Maxim Cournoyer
2022-09-25gnu: Add python-vaex-core.•••* gnu/packages/python-science.scm (python-vaex-core): New variable. Ricardo Wurmus
2022-09-18gnu: python-cython: Remove duplicate version.•••* gnu/packages/python-xyz.scm (python-cython-0.29.32): Remove variable. * gnu/packages/python-science.scm (python-pandas)[native-inputs]: Change from PYTHON-CYTHON-0.29.32 to PYTHON-CYTHON. Marius Bakke
2022-09-18gnu: python-pandas: Update to 1.4.4.•••* gnu/packages/python-science.scm (python-pandas): Update to 1.4.4. [native-inputs]: Change from PYTHON-CYTHON to PYTHON-CYTHON-0.29.32. Marius Bakke
2022-09-16gnu: python-scipy: Update to 1.9.1.•••* gnu/packages/python-science.scm (python-scipy): Update to 1.9.1. [source]: Switch to GIT-FETCH. [outputs]: Remove. [arguments]: Don't disable Pythran. Don't configure OpenBLAS which is now discovered by pkg-config. Do a "manual" PEP 517 style build. Make install-doc phase conditional on the presence of Sphinx. Simplify tests. [propagated-inputs]: Add PYTHON-PYTHRAN. [native-inputs]: Remove PERL, WHICH, PYTHON-NUMPYDOC, PYTHON-PYDATA-SPHINX-THEME, PYTHON-SPHINX, and PYTHON-SPHINX-PANELS. Add GCC, PKG-CONFIG, PYTHON-PYPA-BUILD and PYTHON-MESON. Marius Bakke
2022-09-14gnu: python-pingouin: Don't pin scikit-learn version.•••* gnu/packages/python-science.scm (python-pingouin)[arguments]: Add phase. Marius Bakke
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