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2016-12-29gnu: Add r-ggbeeswarm....* gnu/packages/statistics.scm (r-ggbeeswarm): New variable. Raoul Jean Pierre Bonnal
2016-12-29gnu: Add r-sourcetools....* gnu/packages/statistics.scm (r-sourcetools): New variable. Raoul Jean Pierre Bonnal
2016-12-29gnu: Add r-beeswarm....* gnu/packages/statistics.scm (r-beeswarm): New variable. Raoul Jean Pierre Bonnal
2016-12-29gnu: Add r-vipor....* gnu/packages/statistics.scm (r-vipor): New variable. Raoul Jean Pierre Bonnal
2016-12-18gnu: r: Update to 3.3.2....* gnu/packages/statistics.scm (r): Update to 3.3.2. Raoul Bonnal
2016-12-14gnu: Add r-bit64....* gnu/packages/statistics.scm (r-bit64): New variable. Ben Woodcroft
2016-12-14gnu: Add r-bit....* gnu/packages/statistics.scm (r-bit): New variable. Ben Woodcroft
2016-11-29Merge branch 'master' into python-build-systemHartmut Goebel
2016-11-28gnu: Add r-rocr....* gnu/packages/statistics.scm (r-rocr): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-gplots....* gnu/packages/statistics.scm (r-gplots): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-gdata....* gnu/packages/statistics.scm (r-gdata): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-gtools....* gnu/packages/statistics.scm (r-gtools): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-sfsmisc....* gnu/packages/statistics.scm (r-sfsmisc): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-fastcluster....* gnu/packages/statistics.scm (r-fastcluster): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-preprocesscore....* gnu/packages/statistics.scm (r-preprocesscore): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-dynamictreecut....* gnu/packages/statistics.scm (r-dynamictreecut): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-spams....* gnu/packages/statistics.scm (r-spams): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-googlesheets....* gnu/packages/statistics.scm (r-googlesheets): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-cellranger....* gnu/packages/statistics.scm (r-cellranger): New variable. Ricardo Wurmus
2016-11-28gnu: Add r-rematch....* gnu/packages/statistics.scm (r-rematch): New variable. Ricardo Wurmus
2016-11-15gnu: python-statsmodels: Fix build...* gnu/packages/statistics.scm (python-statsmodels): [check] set PYTHONPATH prior to running tests. Hartmut Goebel
2016-11-15gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs)....Bug 20765 is solved since we build all Python packages using option "--single-version-externally-managed". * gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove configure-flags. (pepr): remove phase "disable-egg-generation". * gnu/packages/pdf.scm (reportlab): Remove configure-flags. * gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl, python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove configure-flags. (python-pillow) remove phase "disable-egg-generation". (python-libarchive-c) Remove patching setup.cfg. * gnu/packages/statistics.scm (python-patsy): remove phase "prevent-generation-of-egg-archive". * gnu/packages/tls.scm (python-acme): remove phase "disable-egg-compression". * gnu/packages/tor.scm (onionshare): Remove configure-flags. Hartmut Goebel
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)...This patch contains the changes for all modules beside python.scm where setuptools are used in an inherited package and removing this input also removes the need for inheriting the package. This is the case if adding setuptools in the inherited package was the only change. Change this to not inherit and remove the new needless call to "strip-python2-variant (if applicable). * gnu/packages/bioinformatics.scm (python-biopython, python2-biopython, python-twobitreader, python2-twobitreader, python-plastid, python2-plastid, python2-pybigwig, python2-screed, sra-tools): No longer "inherit" Python 2 packages inheriting from a Python 3 package if the sole reason for inheriting was adding python-setuptools respective python2-setuptools to [inputs], [native-inputs] or [propagated-inputs]. Remove now needless [properties] "python2-variant" where applicable. * gnu/packages/django.scm (python-pytest-django, python2-pytest-django, python-django-filter, python2-django-filter): Likewise. * gnu/packages/gnupg.scm (python2-pygpgme): Likewise. * gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient): Likewise. * gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise. * gnu/packages/music.scm (python-pylast, python2-pylast): Likewise. * gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock, python2-git-review): Likewise. * gnu/packages/password-utils.scm (python2-bcrypt): Likewise. * gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise. * gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise. * gnu/packages/web.scm (python2-feedparser): Likewise. Hartmut Goebel
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)...This patch contains the changes where setuptools are used in an inherited package and removing this input keeps the need for inheriting the package. * gnu/packages/bioinformatics.scm (python2-biom-format): Remove python-setuptools respective python2-setuptools from [inputs], [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from a Python 3 package. * gnu/packages/python.scm (python2-pytest-mock, python2-oauthlib, python2-seaborn, python2-tornado, python2-terminado, python2-rauth, python2-anyjson, python2-amqp, python2-kombu, python2-billiard, python2-celery, python2-jellyfish, python2-binaryornot, python2-natsort, python2-graphene): Likewise. * gnu/packages/statistics.scm (python2-statsmodels): Likewise. Hartmut Goebel
2016-11-13Merge branch 'core-updates'Ludovic Courtès
2016-11-10gnu: r-rmarkdown: Remove phase "copy-files-without-mode"....This phase is no longer needed as upstream has merged the fix in the current release. * gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build phase "copy-files-without-mode". Ricardo Wurmus
2016-11-07Merge branch 'master' into core-updatesMark H Weaver
2016-11-06gnu: r-proto: Update project's home-page....* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> ng0
2016-11-06Merge branch 'master' into core-updatesMark H Weaver
2016-11-04gnu: r-nmf: Use bigmemory....* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add r-bigmemory and r-synchronicity. Roel Janssen
2016-11-04gnu: Add r-bigmemory....* gnu/packages/statistics.scm (r-bigmemory): New variable. Roel Janssen
2016-11-04gnu: Add r-synchronicity....* gnu/packages/statistics.scm (r-synchronicity): New variable. Roel Janssen
2016-11-04gnu: Add r-bigmemory-sri....gnu/packages/statistics.scm (r-bigmemory-sri): New variable. Roel Janssen
2016-11-03gnu: r-hmisc: Update to 4.0.0....* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0. [propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis, r-survival. Ricardo Wurmus
2016-11-03gnu: r-r-oo: Update to 1.21.0....* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0. Ricardo Wurmus
2016-11-03gnu: r-openssl: Update to 0.9.5....* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5. Ricardo Wurmus
2016-11-03gnu: r-checkmate: Update to 1.8.2....* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2. Ricardo Wurmus
2016-11-03gnu: r-acepack: Update to 1.4.1....* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1. Ricardo Wurmus
2016-11-03gnu: r-gdtools: Update to 0.1.1....* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1. [propagated-inputs]: Add r-withr. Ricardo Wurmus
2016-11-03gnu: r-proto: Update to 1.0.0....* gnu/packages/statistics.scm (r-proto): Update to 1.0.0. Ricardo Wurmus
2016-11-03gnu: Add r-survival....* gnu/packages/statistics.scm (r-survival): New variable. Ricardo Wurmus
2016-10-27Merge branch 'master' into core-updatesMark H Weaver
2016-10-27gnu: r: Use uname from Guix...* gnu/packages/statistics.scm (r): Use uname from Guix. Roel Janssen
2016-10-26Merge branch 'master' into core-updatesLeo Famulari
2016-10-26gnu: r: Update to 3.3.1....* gnu/packages/statistics.scm (r): Update to 3.3.1. Ricardo Wurmus
2016-10-26gnu: r-matrixstats: Update to 0.51.0....* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0. Ricardo Wurmus
2016-10-26gnu: r-r-utils: Update to 2.4.0....* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0. Ricardo Wurmus
2016-10-26gnu: r-irlba: Update to 2.1.2....* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2. Ricardo Wurmus
2016-10-26gnu: r-codetools: Update to 0.2-15....* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15. Ricardo Wurmus
2016-10-26gnu: r-snow: Update to 0.4-2....* gnu/packages/statistics.scm (r-snow): Update to 0.4-2. Ricardo Wurmus