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2017-03-16gnu: Add r-seurat....* gnu/packages/bioinformatics.scm (r-seurat): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Raoul Jean Pierre Bonnal
2017-03-16gnu: sra-tools: Update to 2.8.2-1....* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1. [arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags. Ricardo Wurmus
2017-03-16gnu: ncbi-vdb: Install configuration files....* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add phase "install-configuration-files". Ricardo Wurmus
2017-03-16gnu: ncbi-vdb: Override search path for java-ngs....* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Patch "package.prl" to ensure that java-ngs is found by the configure script; remove configure flag "--with-ngs-java-prefix". Ricardo Wurmus
2017-03-16gnu: ncbi-vdb: Use modify-phases syntax....* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use modify-phases syntax. Ricardo Wurmus
2017-03-16gnu: ncbi-vdb: Update to 2.8.2....* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2. Ricardo Wurmus
2017-03-16gnu: ngs-sdk: Update to 1.3.0....* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0. Ricardo Wurmus
2017-03-16gnu: Add pzstd....* gnu/packages/compression.scm (pzstd): New variable. Tobias Geerinckx-Rice
2017-03-16gnu: Add zstd....* gnu/packages/compression.scm (zstd): New variable. Tobias Geerinckx-Rice
2017-03-16gnu: python-publicsuffix2: Update to 2.20160818....* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818. Tobias Geerinckx-Rice
2017-03-16gnu: awscli: Update to 1.11.63....* gnu/packages/python.scm (awscli): Update to 1.11.63. Tobias Geerinckx-Rice
2017-03-16gnu: python-botocore: Update to 1.5.26....* gnu/packages/python.scm (python-botocore): Update to 1.5.26. Tobias Geerinckx-Rice
2017-03-16gnu: python-ptyprocess: Update to 0.5.1....* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1. Tobias Geerinckx-Rice
2017-03-15gnu: Add prboom-plus....* gnu/packages/games.scm (prboom-plus): New variable. Kei Kebreau
2017-03-15gnu: Add tftp-hpa....* gnu/packages/networking.scm (tftp-hpa): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Gábor Boskovits
2017-03-15gnu: guile-next: Update to 2.2.0....* gnu/packages/guile.scm (guile-next): Update to 2.2.0. Andy Wingo
2017-03-15gnu: profanity: Make the source URL version-agnostic....* gnu/packages/messaging.scm (profanity)[source]: Use (version) in the source URL. Leo Famulari
2017-03-15gnu: units: Update to 2.14....* gnu/packages/maths.scm (units): Update to 2.14. Tobias Geerinckx-Rice
2017-03-15gnu: no-more-secrets: Update to 0.3.2....* gnu/packages/games.scm (no-more-secrets): Update to 0.3.2. Tobias Geerinckx-Rice
2017-03-15gnu: mailutils: Update to 3.2....* gnu/packages/mail.scm (mailutils): Update to 3.2. Tobias Geerinckx-Rice
2017-03-15gnu: Use INSTALL-FILE where appropriate....* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler INSTALL-FILE for COPY-FILE when invoked with redundant arguments. * gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity, edirect, fasttree, rsem, samtools-0.1): Likewise. * gnu/packages/code.scm (withershins): Likewise. * gnu/packages/conky.scm (conky): Likewise. * gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise. * gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise. * gnu/packages/engineering.scm (librecad): Likewise. Tobias Geerinckx-Rice
2017-03-15gnu: cryptsetup: Update to 1.7.4....* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.4. Tobias Geerinckx-Rice
2017-03-15gnu: man-pages: Update to 4.10....* gnu/packages/man.scm (man-pages): Update to 4.10. [home-page]: Use HTTPS. Tobias Geerinckx-Rice
2017-03-15gnu: Add profanity....* gnu/packages/messaging.scm (profanity): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Mekeor Melire
2017-03-15gnu: Add libstrophe....* gnu/packages/messaging.scm (libstrophe): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Mekeor Melire
2017-03-15gnu: Add libmesode....* gnu/packages/messaging.scm (libmesode): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Mekeor Melire
2017-03-15gnu: bitcoin-core: Update to 0.14.0....* gnu/packages/finance.scm (bitcoin-core): Update to 0.14.0. Leo Famulari
2017-03-15gnu: mariadb: Update to 10.1.22 [fixes CVE-2017-3302 and CVE-2017-3313]....* gnu/packages/databases.scm (mariadb): Update to 10.1.22. Marius Bakke
2017-03-15gnu: python-waf: Update to 1.9.8....* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8. [home-page]: Use https. Efraim Flashner
2017-03-15gnu: direnv: Update to 2.11.3....* gnu/packages/shellutils.scm (direnv): Update to 2.11.3. Tobias Geerinckx-Rice
2017-03-15gnu: conky: Update to 1.10.6....* gnu/packages/conky.scm (conky): Update to 1.10.6. Tobias Geerinckx-Rice
2017-03-15gnu: obs: Update to 18.0.1....* gnu/packages/video.scm (obs): Update to 18.0.1. Tobias Geerinckx-Rice
2017-03-15gnu: youtube-dl: Update to 2017.03.15....* gnu/packages/video.scm (youtube-dl): Update to 2017.03.15. Tobias Geerinckx-Rice
2017-03-15gnu: stress-make: Fix description....* gnu/packages/debug.scm (stress-make)[description]: Fix typo. Avoid ambiguous use of ‘in order’. Tobias Geerinckx-Rice
2017-03-15gnu: znc: Update to 1.6.5....* gnu/packages/messaging.scm (znc): Update to 1.6.5. Tobias Geerinckx-Rice
2017-03-15gnu: grue-hunter: Correctly install documentation....* gnu/packages/games.scm (grue-hunter)[arguments]: Install and populate ‘/share/doc/grue-hunter’ as a directory, not a plain file. Tobias Geerinckx-Rice
2017-03-15gnu: samtools: End installation phases with truth....* gnu/packages/bioinformatics.scm (samtools, samtools-0.1)[arguments]: Return #T instead of the undefined results of COPY-FILE or INSTALL-FILE. Tobias Geerinckx-Rice
2017-03-14gnu: w3m: Update to 0.5.3+git20170102 [security fixes]....See 'NEWS' and 'ChangeLog' in the source distribution for more information about the security-related bug fixes. * gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20170102. Leo Famulari
2017-03-14Revert "gnu: gitolite: Fix shebangs in hooks."...This change embedded store references in the shebangs of scripts that were meant to be copied out of the store. Those scripts would break when the interpreters expected by the shebangs were garbage collected. <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25966#28> This reverts commit d0c16adb190c7244ee3ef1329cba78a015ae5d10. Leo Famulari
2017-03-14Revert "gnu: nss: Use 'modify-phases' syntax."...This reverts commit 87f1c7efc18f8996b0b2817a5f7b84eebe2ddf5a. Marius Bakke
2017-03-14Revert "gnu: nss, nss-certs: Update to 3.29.3."...Hydra failed to build this version. See discussion at https://lists.gnu.org/archive/html/guix-devel/2017-03/msg00408.html. This reverts commit 4f3dcdd99ba13ab3bdbf1e014afcd076cd95fac7. Marius Bakke
2017-03-14gnu: Add ocaml-ppx-typerep-conv....* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable. Julien Lepiller
2017-03-14gnu: Add ocaml-ppx-let....* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable. Julien Lepiller
2017-03-14gnu: Add ocaml-ppx-enumerate....* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable. Julien Lepiller
2017-03-14gnu: Add ocaml-ppx-assert....* gnu/packages/ocaml.scm (ocaml-ppx-assert): New variable. Julien Lepiller
2017-03-14gnu: Add ocaml-ppx-here....* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable. Julien Lepiller
2017-03-14gnu: Add ocaml-ppx-variants-conv....* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): New variable. Julien Lepiller
2017-03-14gnu: Add ocaml-ppx-sexp-conv....* gnu/packages/ocaml.scm (ocaml-ppx-sexp-conv): New variable. Julien Lepiller
2017-03-14gnu: Add ocaml-variantslib....* gnu/packages/ocaml.scm (ocaml-variantslib): New variable. Julien Lepiller
2017-03-14gnu: Add ocaml-typerep....* gnu/packages/ocaml.scm (ocaml-typerep): New variable. Julien Lepiller