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2016-12-29gnu: r-genomicfeatures: Update to 1.26.2....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2. Ricardo Wurmus
2016-12-29gnu: r-biostrings: Update to 2.42.1....* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1. Ricardo Wurmus
2016-12-29gnu: r-limma: Update to 3.30.7....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7. Ricardo Wurmus
2016-12-29gnu: r-variantannotation: Update to 1.20.2....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2. Ricardo Wurmus
2016-12-29gnu: r-edger: Update to 3.16.5....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5. Ricardo Wurmus
2016-12-29gnu: r-genomeinfodb: Update to 1.10.1....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1. Ricardo Wurmus
2016-12-29gnu: r-iranges: Update to 2.8.1....* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1. Ricardo Wurmus
2016-12-29gnu: r-s4vectors: Update to 0.12.1....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1. Ricardo Wurmus
2016-12-29gnu: r-biocstyle: Update to 2.2.1....* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1. Ricardo Wurmus
2016-12-29gnu: r-deseq2: Update to 1.14.1....* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1. Ricardo Wurmus
2016-12-29gnu: r-annotate: Update to 1.52.1....* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1. [propagated-inputs]: Add r-rcurl. Ricardo Wurmus
2016-12-29gnu: khard: Update to 0.11.3....* gnu/packages/mail.scm (khard): Update to 0.11.3. [arguments]: Build with python instead of python-2. Remove 'disable-egg-compression' phase. [propagated-inputs]: Don't use python-2 variants of propagated-inputs. Leo Famulari
2016-12-29gnu: r-rsqlite: Update to 1.1-1....* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1. [propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp. Ricardo Wurmus
2016-12-29gnu: Add r-plogr....* gnu/packages/statistics.scm (r-plogr): New variable. Ricardo Wurmus
2016-12-29gnu: r-hmisc: Update to 4.0-1....* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1. [propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and r-rpart; add r-base64. Ricardo Wurmus
2016-12-29gnu: Add r-base64....* gnu/packages/statistics.scm (r-base64): New variable. Ricardo Wurmus
2016-12-29gnu: r-rmarkdown: Update to 1.3....* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3. [propagated-inputs]: Remove r-tibble; add r-rprojroot. Ricardo Wurmus
2016-12-29gnu: Add r-rprojroot....* gnu/packages/statistics.scm (r-rprojroot): New variable. Ricardo Wurmus
2016-12-29gnu: r-rcpparmadillo: Update to 0.7.600.1.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.600.1. Ricardo Wurmus
2016-12-29gnu: armadillo: Update to 7.600.2....* gnu/packages/maths.scm (armadillo): Update to 7.600.2. Ricardo Wurmus
2016-12-29gnu: r-zoo: Update to 1.7-14....* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14. [propagated-inputs]: Remove r-lattice. Ricardo Wurmus
2016-12-29gnu: r-fastcluster: Update to 1.1.22....* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22. Ricardo Wurmus
2016-12-29gnu: r-plotly: Update to 4.5.6....* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6. Ricardo Wurmus
2016-12-29gnu: r-r-rsp: Update to 0.40.0....* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0. Ricardo Wurmus
2016-12-29gnu: r-r-utils: Update to 2.5.0....* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0. Ricardo Wurmus
2016-12-29gnu: r-coda: Update to 0.19-1....* gnu/packages/statistics.scm (r-coda): Update to 0.19-1. [propagated-inputs]: Remove r-lattice. Ricardo Wurmus
2016-12-29gnu: r-chron: Update to 2.3-48....* gnu/packages/statistics.scm (r-chron): Update to 2.3-48. Ricardo Wurmus
2016-12-29gnu: r-knitr: Update to 1.15.1....* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1. [propagated-inputs]: Remove r-formatr. Ricardo Wurmus
2016-12-29gnu: r-bh: Update to 1.62.0-1....* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1. Ricardo Wurmus
2016-12-29gnu: r-svglite: Update to 1.2.0....* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0. Ricardo Wurmus
2016-12-29gnu: r-gdtools: Update to 0.1.3....* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3. Ricardo Wurmus
2016-12-29gnu: r-ggplot2: Update to 2.2.0....* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0. [propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and r-tibble. Ricardo Wurmus
2016-12-29gnu: r-scales: Update to 0.4.1....* gnu/packages/statistics.scm (r-scales): Update to 0.4.1. Ricardo Wurmus
2016-12-29gnu: r-mgcv: Update to 1.8-16....* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16. Ricardo Wurmus
2016-12-29gnu: r-qtl: Update to 1.40-8....* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8. Ricardo Wurmus
2016-12-29gnu: r-hms: Update to 0.3....* gnu/packages/statistics.scm (r-hms): Update to 0.3. Ricardo Wurmus
2016-12-29gnu: r-git2r: Update to 0.17.0....* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0. Ricardo Wurmus
2016-12-29gnu: r-ade4: Update to 1.7-5...* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5. Ricardo Wurmus
2016-12-29gnu: r-xml: Update to 3.98-1.5....* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5. [propagated-inputs]: Remove r-rcurl. Ricardo Wurmus
2016-12-29gnu: r-sparsem: Update to 1.74....* gnu/packages/statistics.scm (r-sparsem): Update to 1.74. Ricardo Wurmus
2016-12-29gnu: r-data-table: Update to 1.10.0....* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0. [propagated-inputs]: Remove r-chron. Ricardo Wurmus
2016-12-29gnu: r-estimability: Update to 1.2....* gnu/packages/statistics.scm (r-estimability): Update to 1.2. Ricardo Wurmus
2016-12-29gnu: r-rcpp: Update to 0.12.8....* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8. Ricardo Wurmus
2016-12-29gnu: r-yaml: Update to 2.1.14....* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14. Ricardo Wurmus
2016-12-29gnu: r-htmlwidgets: Update to 0.8....* gnu/packages/web.scm (r-htmlwidgets): Update to 0.8. Ricardo Wurmus
2016-12-29gnu: r-curl: Update to 2.3....* gnu/packages/web.scm (r-curl): Update to 2.3. Ricardo Wurmus
2016-12-29gnu: r-servr: Update to 0.5....* gnu/packages/web.scm (r-servr): Update to 0.5. Ricardo Wurmus
2016-12-29Remove Emacs interface....* emacs/guix-about.el: Remove file. * emacs/guix-backend.el: Likewise. * emacs/guix-base.el: Likewise. * emacs/guix-buffer.el: Likewise. * emacs/guix-build-log.el: Likewise. * emacs/guix-command.el: Likewise. * emacs/guix-config.el.in: Likewise. * emacs/guix-devel.el: Likewise. * emacs/guix-entry.el: Likewise. * emacs/guix-external.el: Likewise. * emacs/guix-geiser.el: Likewise. * emacs/guix-guile.el: Likewise. * emacs/guix-help-vars.el: Likewise. * emacs/guix-helper.scm.in: Likewise. * emacs/guix-history.el: Likewise. * emacs/guix-hydra-build.el: Likewise. * emacs/guix-hydra-jobset.el: Likewise. * emacs/guix-hydra.el: Likewise. * emacs/guix-info.el: Likewise. * emacs/guix-init.el: Likewise. * emacs/guix-license.el: Likewise. * emacs/guix-list.el: Likewise. * emacs/guix-location.el: Likewise. * emacs/guix-main.scm: Likewise. * emacs/guix-messages.el: Likewise. * emacs/guix-pcomplete.el: Likewise. * emacs/guix-popup.el: Likewise. * emacs/guix-prettify.el: Likewise. * emacs/guix-profiles.el: Likewise. * emacs/guix-read.el: Likewise. * emacs/guix-ui-generation.el: Likewise. * emacs/guix-ui-license.el: Likewise. * emacs/guix-ui-location.el: Likewise. * emacs/guix-ui-package.el: Likewise. * emacs/guix-ui-system-generation.el: Likewise. * emacs/guix-ui.el: Likewise. * emacs/guix-utils.el: Likewise. * emacs/local.mk: Likewise. * doc/emacs.texi: Likewise. * doc/guix.texi: Remove cross-references to Emacs nodes. (Package Management): Mention 'emacs-guix' package. * doc/contributing.texi (The Perfect Setup): Remove the reference. * doc/htmlxref.cnf: Add 'emacs-guix' URL. * Makefile.am: Remove Emacs stuff. * configure.ac: Likewise. * gnu/packages/package-management.scm (guix-0.12.0)[native-inputs]: Remove "emacs". [propagated-inputs]: Remove "geiser" and "emacs-magit-popup". Co-authored-by: Ludovic Courtès <ludo@gnu.org> Alex Kost
2016-12-29gnu: r-colorspace: Update to 1.3-2....* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2. Ricardo Wurmus
2016-12-29gnu: Add r-statmod....* gnu/packages/statistics.scm (r-statmod): New variable. Raoul Jean Pierre Bonnal