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2023-05-06gnu: node-lts: Update to 18.16.0....* gnu/packages/node.scm (node-lts): Update to 18.16.0. [snippet]: Keep file deps/openssl/nodejs-openssl.cnf. [arguments]<#:configure-flags>: Enable v8 snapshot compression. <#:phases>: Adjust problematic tests to delete accordingly. Patch additional file with hardcoded references to /bin/sh. [native-inputs,inputs]: Replace openssl-1.1 with openssl. Replace libuv-for-node with libuv. Replace nghttp2-for-node with nghttp2. Signed-off-by: Jelle Licht <jlicht@fsfe.org> Co-authored-by: Jelle Licht <jlicht@fsfe.org> Hilton Chain
2023-05-06gnu: llhttp-bootstrap: Update to 6.0.10....* gnu/packages/node.scm (llhttp-bootstrap): Update to 6.0.10. * gnu/packages/patches/llhttp-bootstrap-CVE-2020-8287.patch: Remove file. * gnu/local.mk: Remove it. Signed-off-by: Jelle Licht <jlicht@fsfe.org> Hilton Chain
2023-05-06gnu: emacs-nodejs-repl: Build with node-lts....* gnu/packages/emacs-xyz.scm (emacs-nodejs-repl)[inputs]: Replace node by node-lts. Jelle Licht
2023-05-06gnu: node-openzwave-shared: Fix compilation for new versions of node...* gnu/packages/zwave.scm (node-openzwave-shared)[arguments]<#:phases>: Add patch-compiler phase to allow compilation with node versions 16 and up. Jelle Licht
2023-05-06gnu: node-serialport: Avoid gyp rebuilds....* gnu/packages/node-xyz.scm (node-serialport)[arguments]<phases>: Explicitly disable gyp recompilation. Jelle Licht
2023-05-06gnu: node-uglify-js: Update to 3.14.2....* gnu/packages/uglifyjs.scm (node-uglify-js): Update to 3.14.2. Jelle Licht
2023-05-06gnu: node-yazl: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-yazl)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-ieee754: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-ieee754)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-resolve-protobuf-schema: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-resolve-protobuf-schema)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-protocol-buffers-schema: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-protocol-buffers-schema)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-pbf: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-pbf)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-minimist: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-minimist)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-crx3: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-crx3)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-buffer-crc32: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-acorn)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-acorn: Fix broken transpilation....* gnu/packages/node-xyz.scm (node-acorn)[native-inputs]: Add `esbuild'. [arguments]<phases>: Replace build phase by custom `esbuild' invocations. Jelle Licht
2023-05-06gnu: node-acorn: Remove lifecycle script....* gnu/packages/node-xyz.scm (node-acorn)[arguments]<modules>: New argument. <phases>: Patch out unused 'prepare' script that breaks dependents. Jelle Licht
2023-05-06gnu: node-acorn: Disable tests....* gnu/packages/node-xyz.scm (node-acorn): Explicitly disable tests. Jelle Licht
2023-05-06gnu: guix-build-coordinator: Update to 0-80.d030cac....* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-80.d030cac. Christopher Baines
2023-05-06gnu: guix-data-service: Update to 0.0.1-40.3734a85...* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-40.3734a85. Christopher Baines
2023-05-06gnu: rizin: Fix build....* gnu/packages/engineering.scm (rizin)[arguments]: Skip failing tests. 宋文武
2023-05-06gnu: mupdf: Simplify snippet....* gnu/packages/pdf.scm (mupdf)[source]: Simplify code to remove unused thirdparty libs. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2023-05-06gnu: mupdf: Update to 1.22.0....* gnu/packages/pdf.scm (mupdf): Update to 1.22.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2023-05-05gnu: git-crypt: Fix build issues on OpenSSL 3....* gnu/packages/version-control.scm (git-crypt)[arguments]: In 'build' phase, set 'CXXFLAGS'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sergey Trofimov
2023-05-05gnu: lttng-tools: Fix build failure....* gnu/packages/instrumentation.scm (lttng-tools) [native-inputs]: Add autoconf, automake, libtool. [arguments]: Add 'autoreconf build phase before 'configure. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Olivier Dion
2023-05-05gnu: bear: Build against 'abseil-cpp-cxxstd11'....Fixes a linker error when building bear, caused by incompatibility between abseil-cpp used by bear and abseil-cpp-cxxstd11 used by grpc. * gnu/packages/build-tools.scm (bear)[native-inputs]: Use ABSEIL-CPP-CXXSTD11. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Andrew Whatson
2023-05-05gnu: guile2.0-shepherd: Remove....Version 0.9.x of the Shepherd requires Guile >= 2.2. * gnu/packages/admin.scm (guile2.0-shepherd): Remove. Ludovic Courtès
2023-05-05Revert "gnu: Add python-gimmemotifs."...This reverts commit dc8b3ebe5d4ba2a39c12f62d836963ffee1e4b47. python-gimmemotifs is not usable without proprietary third-party tools. Ricardo Wurmus
2023-05-05gnu: gcc-11: Fix patch-hurd-libpthread phase....It didn't work when it was introduced in 08acdd0765b5f4fbfafa699a823ea7985d4d35a7. * gnu/packages/gcc.scm (gcc-11)[arguments]: Remove the procedure arguments, and use %build-inputs rather than inputs. * gnu/packages/commencement.scm (gcc-boot0)[native-inputs]: Add hurd-patch, as this package inherits from gcc-11. Christopher Baines
2023-05-05gnu: Add python-gimmemotifs....* gnu/packages/bioinformatics.scm (python-gimmemotifs): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-norns....* gnu/packages/python-xyz.scm (python-norns): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-xdg....* gnu/packages/python-xyz.scm (python-xdg): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-qnorm....* gnu/packages/python-xyz.scm (python-qnorm): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-biofluff....* gnu/packages/bioinformatics.scm (python-biofluff): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-genomepy....* gnu/packages/bioinformatics.scm (python-genomepy): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-filelock-3.5....* gnu/packages/python-xyz.scm (python-filelock-3.5): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-logomaker....* gnu/packages/bioinformatics.scm (python-logomaker): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-mysql-connector-python....* gnu/packages/python-xyz.scm (python-mysql-connector-python): New variable. Ricardo Wurmus
2023-05-05gnu: Add protobuf-3.20....* gnu/packages/protobuf.scm (protobuf-3.20): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-palettable....* gnu/packages/python-xyz.scm (python-palettable): New variable. Ricardo Wurmus
2023-05-05gnu: python-pyfaidx: Update to 0.7.2.1....* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.7.2.1. [build-system]: Use pyproject-build-system. [arguments]: Ignore tests that require large downloads. [native-inputs]: Remove python-six; add python-fsspec, python-pytest, python-pytest-cov, python-mock, and python-numpy. Ricardo Wurmus
2023-05-05gnu: python-sanic: Disable failing SSL tests....Best guess is that they check for broken behavior in one of the dependencies, which has changed. * gnu/packages/python-web.scm (python-sanic)[arguments]: Disable more tests. Lars-Dominik Braun
2023-05-05gnu: python-gssapi: Update to 1.8.2....* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.8.2. [native-inputs]: Add python-cython. Lars-Dominik Braun
2023-05-05gnu: python-k5test: Update to 0.10.3....* gnu/packages/python-xyz.scm (python-k5test): Update to 0.10.3. Lars-Dominik Braun
2023-05-05gnu: python-atpublic: Update to 3.1.1....* gnu/packages/python-check.scm (python-atpublic): Update to 3.1.1. [build-system]: Switch to pyproject-build-system. [arguments]: Remove #:phases, override build backend. [native-inputs]: Replace nose2 with pytest, add python-pdm-backend, python-sybil and python-pytest-cov. Lars-Dominik Braun
2023-05-05gnu: Add python-pdm-backend....* gnu/packages/python-build.scm (python-pdm-backend): New variable. Lars-Dominik Braun
2023-05-05gnu: guix: Update to dc5430c....* gnu/packages/package-management.scm (guix): Update to dc5430c. Ludovic Courtès
2023-05-04gnu: python-fs: Remove indirect dependency on Rust when unsupported....This allows to build font-abattis-cantarell on aarch64-linux. * gnu/packages/python-xyz.scm (python-fs)[arguments]: Add #:tests?. [native-inputs]: Turn into the empty list when cross-compiling or when PYTHON-PYFTPDLIB is not supported. Ludovic Courtès
2023-05-04gnu: psautohint: Remove unneeded dependencies....* gnu/packages/fontutils.scm (psautohint)[native-inputs]: Remove PYTHON-FS and PYTHON-PYTEST-RANDOMLY. Ludovic Courtès
2023-05-04gnu: vifm: Update to 0.13....* gnu/packages/vim.scm (vifm): Update to 0.13. [arguments]: Adjust substitutions in custom 'patch-test-shebangs phase. Efraim Flashner
2023-05-04gnu: python-screed: Update to 1.1.2....* gnu/packages/bioinformatics.scm (python-screed): Update to 1.1.2. [build-system]: Use pyproject-build-system. [native-inputs]: Remove python-pytest. [inputs]: Remove python-bz2file. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu