| Age | Commit message (Expand) | Author |
|---|
| 2023-07-13 | gnu: linux-libre: Update to 6.3.13....* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.13.
(linux-libre-6.3-pristine-source): Update hash.
| Leo Famulari |
| 2023-07-13 | gnu: Add python-plotnine....* gnu/packages/python-science.scm (python-plotnine): New variable.
| Ricardo Wurmus |
| 2023-07-13 | gnu: python-mizani: Fix embedded version string....* gnu/packages/python-xyz.scm (python-mizani)[native-inputs]: Add
python-setuptools-scm to correct embedded version form 0.0.0 to 0.9.2.
| Ricardo Wurmus |
| 2023-07-13 | gnu: gnumach: Disable builtin networking....See also
https://logs.guix.gnu.org/hurd/2023-05-25.log#163610
* gnu/packages/hurd.scm (gnumach)[arguments]: Add --disable-net-group,
--disable-pcmcia-group, and --disable-wireless-group.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Janneke Nieuwenhuizen |
| 2023-07-13 | gnu: netdde: Resurrect and update to 2.6.32.65-2-e67c284ac1....* gnu/packages/patches/netdde-build-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/hurd.scm (netdde)[source]: Update to
e67c284ac113d939b10b4578334f27dab29d5b08 and use it.
[inputs]: Add zlib:static.
[arguments]: Remove #true from build phases. In 'build' phase, remove
obsolete CFLAGS, and also build static version. In 'install' phase,
install them in <out>/hurd. There is no check target, so set #:tests?
to #false.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Janneke Nieuwenhuizen |
| 2023-07-13 | gnu: gnumach: Support "noide" argument....* gnu/packages/patches/gnumach-support-noide.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/hurd.scm (gnumach-headers): Use it.
* doc/guix.texi (Bootloader Configuration): Document it.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Janneke Nieuwenhuizen |
| 2023-07-13 | gnu: hurd: Add rumpkernel....* gnu/packages/patches/hurd-fix-rumpdisk-build.patch,
gnu/packages/patches/hurd-rumpdisk-no-hd.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/hurd.scm (hurd): Use them.
(hurd)[inputs]: Replace util-linux with util-linux:static, add parted,
rumpkernel.
[arguments]: Rename `prepare-dde' phase to 'prepare-addons'. Add "rumpdisk"
directory. Add --enable-static-progs=... option to #:configure-flags, and
remove --without-parted.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Janneke Nieuwenhuizen |
| 2023-07-13 | gnu: parted: Support building for the Hurd....* gnu/packages/disk.scm (parted)[inputs]: Remove lvm2, add hurd-minimal
when building for the Hurd.
[arguments]: Add configure-flag '--disable-device-mapper' when building for
the Hurd.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Janneke Nieuwenhuizen |
| 2023-07-13 | gnu: hurd-minimal: Include libshouldbeinlibc and libstore....* gnu/packages/hurd.scm (hurd-minimal)[inputs]: Add gnumach-headers.
[arguments]: Rewrite to include libshouldbeinlibc and libstore.
* gnu/packages/cross-base.scm (cross-kernel-headers*): Update xhurd-minimal
accordingly: Add xgnumach-headers, add them to cpath, use gexps for
modify-phases, add delete-shared-target phase.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Janneke Nieuwenhuizen |
| 2023-07-13 | gnu: Add rumpkernel....This uses the Debian Salsa rumpkernel package git as upstream as that is where
delopment happens. Once things have stabalized upstream may change to the
NetBSD git from where Debian takes their snapshots.
* gnu/packages/hurd.scm (rumpkernel): New variable.
(hurd-headers)[native-inputs]: Use cross-mig directly.
(gnumach)[native-inputs]: Likewise.
(hurd)[native-inputs]: Likewise.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Janneke Nieuwenhuizen |
| 2023-07-13 | gnu: hurd: Update libpciaccess to 0.17....As suggested by youpi on IRC
https://logs.guix.gnu.org/hurd/2023-05-17.log#132259
libpciaccess-0.16 is too old for the Hurd and would need Hurd-specific patches
while libpciaccess-0.17 works out of the box.
* gnu/packages/hurd.scm (hurd)[inputs]: Use libpciaccess-0.17.
(netdde)[inputs]: Likewise.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Janneke Nieuwenhuizen |
| 2023-07-13 | gnu: Add libpciaccess-0.17....* gnu/packages/xorg.scm (libpciaccess-0.17): New variable.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Janneke Nieuwenhuizen |
| 2023-07-13 | gnu: hurd: Update to v0.9.git20230216....* gnu/packages/hurd.scm (hurd-headers): Update to v0.9.git20230216.
| Josselin Poiret |
| 2023-07-13 | gnu: mig: Update to 1.8+git20230520....* gnu/packages/hurd.scm (mig)[source]: Update to 1.8+git20230520.
* gnu/packages/patches/gnumach-add-missing-const_mach_port_name_array_t-type.patch:
Drop patch.
* gnu/local.mk (dist_patch_DATA): Unregister it.
| Josselin Poiret |
| 2023-07-13 | gnu: gnumach: Update to 1.8+git20221224....* gnu/packages/hurd.scm (gnumach-headers): Update to 1.8+git20221224.
| Josselin Poiret |
| 2023-07-13 | gnu: Add libc-for-target and glibc/hurd....* gnu/packages/patches/glibc-2.37-hurd-clock_t_centiseconds.patch
* gnu/packages/patches/glibc-2.37-hurd-local-clock_gettime_MONOTONIC.patch
* gnu/packages/patches/glibc-2.37-versioned-locpath.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/base.scm (glibc/hurd, libc-for-target): New variables.
(glibc/hurd-headers): Use glibc/hurd.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[outputs,
source, arguments]
(glibc-final)[source]: Use libc-for-target instead of glibc.
* gnu/packages/cross-base.scm (cross-libc/deprecated, cross-libc*): Use
libc-for-target.
This part fixes
https://issues.guix.gnu.org/63641#25
* gnu/packages/commencement.scm (%final-inputs): Change to memoized lambda
taking "system".
* gnu/packages/commencement.scm (canonical-package): Likewise, and update
user, passing (%current-system).
(make-gcc-toolchain): Update user, passing (%current-system).
* gnu/packages/base.scm (%final-inputs): Likewise.
* guix/scripts/refresh.scm (options->update-specs): Likewise.
* guix/build-system/gnu.scm (standard-packages): Add optional "system"
parameter.
(lower): Update caller.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Co-authored-by: Janneke Nieuwenhuizen <janneke@gnu.org>
| Josselin Poiret |
| 2023-07-13 | gnu: hurd: Update supported systems....* gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal,
hurd-core-headers, gnumach): Update supported systems to %hurd-systems.
| Josselin Poiret |
| 2023-07-13 | gnu: gnumach-headers: Cross-build without relying on x86....* gnu/packages/hurd.scm (gnumach-headers): Remove configure flags where we
say the builder is running x86.
* gnu/packages/cross-base.scm (cross-gnumach-headers): Work around limitation
of build system, by manually changing the target host_cpu without relying on
--host, because we don't have a working cross-compiler yet.
| Josselin Poiret |
| 2023-07-13 | gnu: glibc/hurd-headers: Properly cross-build....* gnu/packages/base.scm (glibc/hurd-headers): Rely on cross-mig, and remove
hardcoded configure flag `--host=i586-pc-gnu`.
* gnu/packages/cross-base.scm (cross-kernel-headers*): Add `--host` and
`--build` configure flags.
| Josselin Poiret |
| 2023-07-13 | gnu: arpack-ng: Update to 3.9.0....* gnu/packages/maths.scm (arpack-ng): Update to 3.9.0.
[source]: Add 'patches'.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[native-inputs]: Remove AUTOCONF, AUTOMAKE, and LIBTOOL.
(arpack-ng-openmpi)[inputs]: Use 'modify-inputs'.
[arguments]: Use gexps.
* gnu/packages/patches/arpack-ng-propagate-rng-state.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
| Ludovic Courtès |
| 2023-07-13 | gnu: sssd: Update to 2.9.1....* gnu/packages/sssd.scm (sssd): Update to 2.9.1.
[native-inputs]: Add bc.
* gnu/packages/patches/sssd-system-directories.patch: Adjust for new version.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Timotej Lazar |
| 2023-07-13 | gnu: clang-runtime-15: Fix address sanitizer support...$ guix shell clang-toolchain@15 -- clang -o test -fsanitize=address test.c
ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan_static-x86_64.a: No such file or directory
ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan-x86_64.a: No such file or directory
clang-15: error: linker command failed with exit code 1 (use -v to see invocation)
* gnu/packages/llvm.scm (clang-runtime-15): Fix address sanitizer
support by bringing back the static libraries.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Tobias Kortkamp |
| 2023-07-13 | gnu: libleak: Update to 0.3.6....* gnu/packages/debug.scm (libleak): Update to 0.3.6.
| fanquake |
| 2023-07-12 | gnu: Add r-numbat....* gnu/packages/bioinformatics.scm (r-numbat): New variable.
| Ricardo Wurmus |
| 2023-07-12 | gnu: Add r-bpcells....* gnu/packages/bioinformatics.scm (r-bpcells): New variable.
| Ricardo Wurmus |
| 2023-07-12 | gnu: nyxt: Update to 3.4.0....* gnu/packages/web-browsers.scm (nyxt): Update to 3.4.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Andre A. Gomes |
| 2023-07-12 | gnu: strace: Update to 6.4....* gnu/packages/linux.scm (strace): Update to 6.4.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Michael Ford |
| 2023-07-12 | gnu: go: Add CPU tuning targets....* gnu/packages/golang.scm (go-1.17)[properties]: New field.
(%go-1.17-arm-micro-architectures,
%go-1.17-powerpc64le-micro-architectures,
%go-1.18-x86_64-micro-architectures): New variables.
(go-1.18)[properties]: New field.
| Efraim Flashner |
| 2023-07-12 | gnu: %gcc-11-x86_64-micro-architectures: Add psabi entries....* gnu/packages/gcc.scm (%gcc-11-x86_64-micro-architectures): Add entries
for x86_64-v{1,2,3,4}.
| Efraim Flashner |
| 2023-07-12 | gnu: r-tcgabiolinks: Update to 2.28.3....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.28.3.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-bionero: Update to 1.8.5....* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.5.
[propagated-inputs]: Remove r-ggnewscale and r-networkd3; add r-ggdendro and r-rlang.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-biocthis: Update to 1.10.3....* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.3.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-basilisk: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-delayedmatrixstats: Update to 1.22.1....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-sparsematrixstats: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-fishpond: Update to 2.6.2....* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-bioccheck: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-universalmotif: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-variancepartition: Update to 1.30.2....* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-variantfiltering: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-quasr: Update to 1.40.1....* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-motifbreakr: Update to 2.14.2....* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.14.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-lpsymphony: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.1.
[native-inputs]: Add gfortran.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-glmgampoi: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-interactionset: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-matrixgenerics: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-systempiper: Update to 2.6.3....* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.3.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-summarizedexperiment: Update to 1.30.2....* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-maaslin2: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.14.1.
[propagated-inputs]: Remove r-lpsymphony; add r-tibble.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-limma: Update to 3.56.2....* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.2.
| Ricardo Wurmus |
