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2015-06-29gnu: Add deal.II....* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables. * gnu/packages/patches/dealii-p4est-interface.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier
2015-06-29gnu: Add SLEPc....* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi) (slepc-complex-openmpi): New variables. Eric Bavier
2015-06-29gnu: Add arpack-ng-openmpi....* gnu/packages/maths.scm (arpack-ng-openmpi): New variable. Eric Bavier
2015-06-29gnu: petsc: Upgrade to 3.6.0....* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0. * gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch. * gnu-system.am (dist_patch_DATA): Remove it. Eric Bavier
2015-06-29gnu: Add MUMPS....* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi) (mumps-metis-openmpi): New variables. * gnu/packages/patches/mumps-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier
2015-06-29gnu: Add METIS....* gnu/packages/maths.scm (metis): New variable. Eric Bavier
2015-06-29gnu: Add p4est....* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables. Eric Bavier
2015-06-29gnu: Add ScaLAPACK....* gnu/packages/maths.scm (scalapack): New variable. Eric Bavier
2015-06-29gnu: scotch, pt-scotch: Build esmumps libraries....* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps phase. Install esmumps libraries and headers in 'install phase. (pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add make parallelism. Eric Bavier
2015-06-29gnu: scotch, pt-scotch: Use modify-phases....* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases. Eric Bavier
2015-06-29gnu: Update scotch to 6.0.4....* gnu/packages/maths.scm (scotch): Update to 6.0.4. [arguments]: Add -fPIC to CFLAGS. * gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a new set of test fixes. * gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier
2015-06-29gnu: openmpi: Upgrade to 1.8.5....* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5. [native-inputs]: Add perl. [arguments]: Add configure flags for thread support. Eric Bavier
2015-06-29gnu: hwloc: Move numactl to inputs....* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here... [inputs]: ...to here. [arguments]: New 'refine-libnuma' phase. Eric Bavier
2015-06-29gnu: hwloc: Upgrade to 1.10.1....* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch. * gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1. [source]: Use patch. [propagated-inputs]: Remove libpci. [inputs]: Add libpciaccess. * gnu-system.am (dist_patch_DATA): Add patch. Eric Bavier
2015-06-29gnu: python-mccabe: Fix license field....* gnu/packages/python.scm (python-mccabe)[license]: 'expat' -> 'license:expat'. Eric Bavier
2015-06-30gnu: Add python-flake8....* gnu/packages/python.scm (python-flake8, python2-flake8): New variables. Cyril Roelandt
2015-06-30gnu: Add python-mccabe....* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables. Cyril Roelandt
2015-06-30gnu: Add python-pyflakes....* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables. Cyril Roelandt
2015-06-30gnu: Add python-pep8....* gnu/packages/python.scm (python-pep8, python2-pep8): New variables. Cyril Roelandt
2015-06-29gnu: withershins: Use new "libiberty" package....* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty". [arguments]: Simplify "find-libiberty" phase. Ricardo Wurmus
2015-06-29gnu: Add libiberty....* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables. Ricardo Wurmus
2015-06-29gnu: r: Update to 3.2.1....* gnu/packages/statistics.scm (r): Update to 3.2.1. * gnu/packages/patches/r-fix-15899.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. Ricardo Wurmus
2015-06-29gnu: Add Blast+....* gnu/packages/bioinformatics.scm (blast+): New variable. Ricardo Wurmus
2015-06-29gnu: global: Update to 6.5....* gnu/packages/code.scm (global): Update to 6.5. Ludovic Courtès
2015-06-29gnu: help2man: Update to 1.47.1....* gnu/packages/man.scm (help2man): Update to 1.47.1. Ludovic Courtès
2015-06-29gnu: parallel: Update to 20150622....* gnu/packages/parallel.scm (parallel): Update to 20150622. Ludovic Courtès
2015-06-29gnu: screen: Update to 4.3.1....* gnu/packages/screen.scm (screen): Update to 4.3.1. Ludovic Courtès
2015-06-29gnu: texinfo: Add version 6.0....* gnu/packages/texinfo.scm (texinfo-6): New variable. Ludovic Courtès
2015-06-29gnu: gcc-4.8: Update to 4.8.5....* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5. Ludovic Courtès
2015-06-29gnu: Add plink....* gnu/packages/bioinformatics.scm (plink): New variable. * gnu/packages/patches/plink-1.07-unclobber-i.patch: New file. Ricardo Wurmus
2015-06-28gnu: synergy: Upgrade to 1.7.3....* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3 [source]: Use github for source download. Add snippet to remove bundled source and binaries. [inputs]: Add openssl. [arguments]: Copy example configuration files to out during 'install phase. Eric Bavier
2015-06-28gnu: Add sfarkxtc....* gnu/packages/compression.scm (sfarkxtc): New variable. Ricardo Wurmus
2015-06-28gnu: Add sfarklib....* gnu/packages/compression.scm (sfarklib): New variable. Ricardo Wurmus
2015-06-28gnu: Add Guitarix....* gnu/packages/audio.scm (guitarix): New variable. Ricardo Wurmus
2015-06-28gnu: ardour: Update to 4.1....* gnu/packages/audio.scm (ardour): Update to 4.1. Ricardo Wurmus
2015-06-28gnu: Add libtar....* gnu/packages/compression.scm (libtar): New variable. Ricardo Wurmus
2015-06-27gnu: Add pv.... * gnu/package/pv.scm (pv): New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Alex Kost <alezost@gmail.com> Claes Wallin
2015-06-26gnu: Refer to 'gcc' instead of 'gcc-4.9'....* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper, libstdc++, gcc-final): Refer to GCC instead of GCC-4.9. * gnu/packages/cross-base.scm (%xgcc): New variable. (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9. * gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9. * gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc, %gcc-static, %gcc-stripped): Likewise. Ludovic Courtès
2015-06-26gnu: youtube-dl: Update to 2015.06.25....* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25. Ludovic Courtès
2015-06-26gnu: Add python2-fastlmm....* gnu/packages/python.scm (python2-fastlmm): New variable. Ricardo Wurmus
2015-06-26gnu: Add python2-pysnptools....* gnu/packages/python.scm (python2-pysnptools): New variable. Ricardo Wurmus
2015-06-25gnu: nettle: Disable ifunc method of library initialization....* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method' phase. Mark H Weaver
2015-06-25gnu: Replace versioned gfortran inputs with just "gfortran"....* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with "gfortran". * gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise. * gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu) (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise. (octave)[native-inputs]: Likewise. (gmsh)[propagated-inputs]: Likewise. * gnu/packages/mpi.scm (openmpi)[inputs]: Likewise. * gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise. * gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with "gfortran". Ricardo Wurmus
2015-06-25gnu: Add default GCC and default gfortran....* gnu/packages/gcc.scm (gcc): New variable. * gnu/packages/gcc.scm (gfortran): New variable. Ricardo Wurmus
2015-06-25gnu: gstreamer: Add search path specification for 'GST_PLUGIN_SYSTEM_PATH'....This reverts commit e53fc0c8a, which add it wrongly to gst-plugins-base. * gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field. (gst-plugins-base)[native-search-paths]: Remove. 宋文武
2015-06-24gnu: pius: Depend on GnuPG 2.0 rather than 2.1....* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0. Ludovic Courtès
2015-06-24gnu: julia: Use modify-phases syntax and add return values....* gnu/packages/julia.scm (julia)[arguments]: Use modify-phases syntax for build phases and add missing return values. Ricardo Wurmus
2015-06-24gnu: r: Use gfortran-4.9....* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with gfortran-4.9. Ricardo Wurmus
2015-06-24gnu: Add gfortran 4.9....* gnu/packages/gcc.scm (gfortran-4.9): New variable. Ricardo Wurmus
2015-06-24gnu: Add hmmer....* gnu/packages/bioinformatics.scm (hmmer): New variable. Ben Woodcroft
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