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2021-06-08gnu: opendht: Update to 2.2.0rc7-1.c8a0b44....* gnu/packages/networking.scm (opendht): Update to 2.2.0rc7-1.c8a0b44. Maxim Cournoyer
2021-06-07gnu: Add l3afpad....* gnu/packages/text-editors.scm (l3afpad): New variable. Leo Famulari
2021-06-08gnu: pigx-rnaseq: Update to 0.0.17....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.17. [arguments]: Remove "use-latest-salmon" phase; add "set-timezone" phase. [inputs]: Replace r-gprofiler with r-gprofiler2; add r-ggpubr and python-deeptools. [native-inputs]: Add tzdata. Ricardo Wurmus
2021-06-07gnu: ghostwriter: Update to 2.0.1....* gnu/packages/text-editors.scm (ghostwriter): Update to 2.0.1. Leo Famulari
2021-06-07gnu: python-pikepdf: Update to 2.12.2....* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.12.2. Nicolas Goaziou
2021-06-07gnu: dino: Update to 0.2.1 [fixes CVE-2021-33896]....* gnu/packages/messaging.scm (dino): Update to 0.2.1. Signed-off-by: Leo Famulari <leo@famulari.name> Jack Hill
2021-06-07gnu: qtwebengine: Enable H.264 WebRTC encoding....* gnu/packages/qt.scm (qtwebengine)[inputs]: Add openh264. [source]: Remove bundled openh264. [arguments]: Adjust build scripts accordingly in the 'substitute-source' phase. Pass '-webengine-proprietary-codecs' in the custom 'configure' phase. Signed-off-by: Leo Famulari <leo@famulari.name> Sergey Trofimov
2021-06-07gnu: youtube-dl: Update to 2021.06.06....* gnu/packages/video.scm (youtube-dl): Update to 2021.06.06. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Xinglu Chen
2021-06-07gnu: isync: Update to 1.4.2....* gnu/packages/mail.scm (isync): Update to 1.4.2. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Xinglu Chen
2021-06-07gnu: pigx-rnaseq: Adjust to upgrade of salmon....* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase "use-latest-salmon". Ricardo Wurmus
2021-06-07gnu: salmon: Update to 1.4.0....* gnu/packages/bioinformatics.scm (salmon): Update to 1.4.0. [arguments]: Remove unnecessary flags, add other soon-to-be-unnecessary flags; remove "prepare-rapmap" phase, add "prepare-pufferfish" phase, add "fix-error-message-in-tests" phase, simplify "use-system-libraries" phase. [inputs]: Add curl and pufferfish sources; remove libdivsufsort and rapmap sources. Ricardo Wurmus
2021-06-07gnu: cereal: Update to 1.3.0....* gnu/packages/serialization.scm (cereal): Update to 1.3.0. Ricardo Wurmus
2021-06-07gnu: macs: Update to 2.2.7.1....* gnu/packages/bioinformatics.scm (macs): Update to 2.2.7.1. Ricardo Wurmus
2021-06-07gnu: libgff: Update to 2.0.0....* gnu/packages/bioinformatics.scm (libgff): Update to 2.0.0. [home-page]: Update to new home. Ricardo Wurmus
2021-06-07gnu: jellyfish: Update to 2.3.0....* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.3.0. [arguments]: Disable SSE to avoid tuning to the build node's CPU. [native-inputs]: Replace python-2 with python-wrapper. [license]: Update. Ricardo Wurmus
2021-06-07gnu: sbcl-fof: Update to 0.2.0....* gnu/packages/lisp-xyz.scm (sbcl-fof): Update to 0.2.0. Pierre Neidhardt
2021-06-07gnu: guix-build-coordinator: Update to 0-31.4a47417....* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-31.4a47417. Christopher Baines
2021-06-07gnu: multiqc: Update to 1.10.1....* gnu/packages/bioinformatics.scm (multiqc): Update to 1.10.1. [arguments]: Remove build phase "relax-requirements"; replace "check" phase. [propagated-inputs]: Add python-coloredlogs, python-future, python-networkx, and python-rich; remove python-nose. [native-inputs]: Add python-pytest and the test suite. Ricardo Wurmus
2021-06-07gnu: Add python-rich....* gnu/packages/python-xyz.scm (python-rich): New variable. Ricardo Wurmus
2021-06-07gnu: python-dataclasses: Update to 0.8....* gnu/packages/python-xyz.scm (python-dataclasses): Update to 0.8. Ricardo Wurmus
2021-06-07gnu: python-attrs: Update to 21.2.0....* gnu/packages/python-xyz.scm (python-attrs): Update to 21.2.0. (python-attrs-bootstrap): Keep this at 19.3.0 to avoid mass rebuilds. Ricardo Wurmus
2021-06-07gnu: python-attrs: Conditionally execute tests....* gnu/packages/python-xyz.scm (python-attrs)[arguments]: Wrap "check" phase in conditional expression. Ricardo Wurmus
2021-06-07gnu: python-hic2cool: Update to 0.8.3....* gnu/packages/bioinformatics.scm (python-hic2cool): Update to 0.8.3. [source]: Download using git-fetch. [arguments]: Enable tests. Add phase to make test data writable. [propagated-inputs]: Add python-h5py, python-numpy, python-pandas, python-scipy. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Mădălin Ionel Patrașcu
2021-06-07gnu: gtg: Update to 0.5....* gnu/packages/gnome.scm (gtg): Update to 0.5. [inputs]: Add gdk-pixbuf+svg, pango, python-lxml. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vinicius Monego
2021-06-07gnu: srain: Update to 1.2.2....* gnu/packages/irc.scm (srain): Update to 1.2.2. [build-system]: Switch to meson-build-system. [arguments]: Add #:glib-or-gtk?. Remove 'fix-permissions phase. [native-inputs]: Add python-sphinx. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vinicius Monego
2021-06-07gnu: xf86-video-vesa: Update to 2.5.0....* gnu/packages/xorg.scm (xf86-video-vesa): Update to 2.5.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Matthew James Kraai
2021-06-07gnu: xpra: Update to 4.2....Fixes <https://issues.guix.gnu.org/issue/48890>. * gnu/packages/xorg.scm (xpra): Update to 4.2. [source]: Switch to ".tar.gz" archive and update patch file. [native-inputs]: Add pandoc. [arguments]: Adjust custom 'fix-paths phase for changes in source. * gnu/packages/patches/xpra-4.2-systemd-run.patch: Adapt to new version and rename file. * gnu/local.mk (dist_patch_DATA): Rename file. Signed-off-by: Lars-Dominik Braun <lars@6xq.net> Lars-Dominik Braun
2021-06-06gnu: gnutls@3.6.16: Fix cross-compilation....Fixes <https://bugs.gnu.org/48771>. Reported by Eric Brown <ecbrown@ericcbrown.com>. * gnu/packages/tls.scm (gnutls-3.6.16)[arguments]: New field. Ludovic Courtès
2021-06-06gnu: libheif: Update to 1.12.0....* gnu/packages/image.scm (libheif): Update to 1.12.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vinicius Monego
2021-06-06gnu: homebank: Update to 5.5.2....* gnu/packages/finance.scm (homebank): Update to 5.5.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vinicius Monego
2021-06-06gnu: cozy: Update to 1.0.3....* gnu/packages/ebook.scm (cozy): Update to 1.0.3. [inputs]: Add granite, libgee. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vinicius Monego
2021-06-06gnu: drawing: Update to 0.8.0....* gnu/packages/gnome.scm (drawing): Update to 0.8.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vinicius Monego
2021-06-06gnu: Add pwntools....* gnu/packages/cybersecurity.scm (pwntools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> c4droid
2021-06-06gnu: komikku: Update to 0.29.1....* gnu/packages/gnome.scm (komikku): Update to 0.29.1. Leo Prikler
2021-06-06gnu: dash: Update to 0.5.11.4....* gnu/packages/shells.scm (dash): Update to 0.5.11.4. Tobias Geerinckx-Rice
2021-06-06gnu: pidgin: Update to 2.14.5....* gnu/packages/messaging.scm (pidgin): Update to 2.14.5. Tobias Geerinckx-Rice
2021-06-06gnu: vlc: Update to 3.0.14....* gnu/packages/video.scm (vlc): Update to 3.0.14. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Solene Rapenne via Guix-patches via
2021-06-06gnu: git: Update to 2.32.0....* gnu/packages/version-control.scm (git): Update to 2.32.0. Tobias Geerinckx-Rice
2021-06-06gnu: Add matterbridge....* gnu/packages/messaging.scm (matterbridge): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Denis 'GNUtoo' Carikli
2021-06-06gnu: Add python-pytest-mp....* gnu/packages/python-check.scm (python-pytest-mp): New variable. Hartmut Goebel
2021-06-06gnu: Add python-asn1tools....* gnu/packages/python-xyz.scm (python-asn1tools): New variable. Hartmut Goebel
2021-06-06gnu: Add ocaml-ppx-cold....* gnu/packages/ocaml.scm (ocaml-ppx-cold): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard
2021-06-06gnu: Add ocaml-ppx-here....* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable. (ocaml4.07-ppx-here): Inherit from ocaml-ppx-here. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard
2021-06-06gnu: Add ocaml-ppx-compare....* gnu/packages/ocaml.scm (ocaml-ppx-compare): New variable. (ocaml4.07-ppx-compare): Inherit from ocaml-ppx-compare. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard
2021-06-06gnu: Add ocaml-syntax-shims....* gnu/packages/ocaml.scm (ocaml-syntax-shims): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard
2021-06-06gnu: Add ocaml-ppx-let....* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable. (ocaml4.07-ppx-let): Inherit from ocaml-ppx-let. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard
2021-06-06gnu: Add ocaml-bigstringaf....* gnu/ocaml/packages.scm (ocaml-bigstringaf): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard
2021-06-06gnu: Add ocaml-ppx-sexp-conv....* gnu/packages/ocaml.scm (ocaml-ppx-sexp-conv): New variable. (ocaml4.07-ppx-sexp-conv): Inherit from ocaml-ppx-sexp-conv. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard
2021-06-06gnu: Add ocaml-uunf....* gnu/packages/ocaml.scm (ocaml-uunf): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard
2021-06-06gnu: Add ocaml-sedlex....* gnu/packages/ocaml.scm (ocaml-sedlex): New variable. (ocaml4.07-sedlex): Inherit from ocaml-sedlex. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard
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