| Age | Commit message (Expand) | Author |
|---|
| 2023-05-12 | gnu: python-canonicaljson: Use pyproject-build-system.•••* gnu/packages/python-xyz.scm (python-canonicaljson)[arguments]: Remove custom
'build, 'check, and 'install phases.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-05-12 | gnu: python-pyproject-metadata: Simplify by using pyproject-build-system.•••* gnu/packages/python-xyz.scm (python-pyproject-metadata)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-05-12 | gnu: python-seaborn: Simplify by using pyproject-build-system.•••* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-05-12 | gnu: shrinkwrap: Use pyproject-build-system.•••* gnu/packages/python-xyz.scm (shrinkwrap)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-05-12 | gnu: jamm: Use G-expression.•••* gnu/packages/bioinformatics.scm (jamm)[arguments]: Use G-expression.
| Ricardo Wurmus |
| 2023-05-12 | gnu: arriba: Use SEARCH-INPUT-FILE and -DIRECTORY.•••* gnu/packages/bioinformatics.scm (arriba)[arguments]:
Use SEARCH-INPUT-DIRECTORY and SEARCH-INPUT-FILE; use G-expression; drop
trailing #T from build phases.
| Ricardo Wurmus |
| 2023-05-12 | gnu: multichoose: Clean up.•••* gnu/packages/bioinformatics.scm (multichoos): Fix indentation.
[arguments]: Use G-expression.
| Ricardo Wurmus |
| 2023-05-12 | gnu: samblaster: Update to 0.1.26.•••* gnu/packages/bioinformatics.scm (samblaster): Update to 0.1.26.
| Ricardo Wurmus |
| 2023-05-12 | gnu: samblaster: Simplify.•••* gnu/packages/bioinformatics.scm (samblaster): Fix indentation.
[arguments]: Use G-expression; drop trailing #T from 'install phase.
[description]: Use double spacing between all sentences.
| Ricardo Wurmus |
| 2023-05-12 | gnu: methyldackel: Update to 0.6.1.•••* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.6.1.
[arguments]: Set LIBBIGWIG variable instead of patching Makefile.
[inputs]: Replace htslib-1.9 with htslib.
| Ricardo Wurmus |
| 2023-05-12 | gnu: methyldackel: Simplify arguments.•••* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Use list, drop
argument list.
[native-inputs]: Drop package label.
| Ricardo Wurmus |
| 2023-05-12 | gnu: phast: Simplify by using G-expression.•••* gnu/packages/bioinformatics.scm (phast)[arguments]: Use G-expression and
drop trailing #T from build phases.
| Ricardo Wurmus |
| 2023-05-12 | gnu: ribotaper: Simplify with G-expression.•••* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Use G-expression and
drop trailing #T from build phase.
| Ricardo Wurmus |
| 2023-05-12 | gnu: sra-tools: Do link with libxml2.•••* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use G-expression for
clarity; drop trailing #T from build phases; modify 'configure phase to
dynamically link with libxml2.
[inputs]: Drop package labels; add libxml2.
| Ricardo Wurmus |
| 2023-05-12 | gnu: ncbi-vdb: Ensure that vdb-sqlite is installed.•••The most important change here is the addition of the 'install-libs phase.
All other changes are just the result of switching to G-expressions.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add 'install-libs
phase; use G-expression; drop trailing #T from build phases.
[inputs]: Drop package labels.
| Ricardo Wurmus |
| 2023-05-12 | gnu: Add python-mgatk.•••* gnu/packages/bioinformatics.scm (python-mgatk): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add Free as in Freedom (2.0).•••* gnu/packages/fsf.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
| 宋文武 |
| 2023-05-12 | gnu: sbcl-serapeum: Update to 20230511.•••* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230511.
| Pierre Neidhardt |
| 2023-05-12 | gnu: python-lightning-cloud: Use older version of fastapi.•••The variant of the fastapi package must match that of
python-pytorch-lightning.
* gnu/packages/machine-learning.scm (python-lightning-cloud)
[propagated-inputs]: Replace python-fastapi with
python-fastapi-for-pytorch-lightning.
| Ricardo Wurmus |
| 2023-05-12 | gnu: Add python-optparse-pretty.•••* gnu/packages/python-xyz.scm (python-optparse-pretty): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add r-dropletutils.•••* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add r-ggpattern.•••* gnu/packages/cran.scm (r-ggpattern): New variable.
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add r-gridpattern.•••* gnu/packages/cran.scm (r-gridpattern): New variable.
| Mădălin Ionel Patrașcu |
| 2023-05-11 | gnu: texlive-datetime2: Add needed propagated-inputs.•••Required packages can be seen with:
$ rg RequirePackage $(guix build texlive-datetime2)
* gnu/packages/tex.scm (texlive-datetime2)[propagated-inputs]: Add
TEXLIVE-ETOOLBOX, TEXLIVE-LATEX-XKEYVAL, and TEXLIVE-TRACKLANG.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Greg Hogan |
| 2023-05-11 | gnu: Add emacs-framemove.•••* gnu/packages/emacs-xyz.scm (emacs-framemove): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Fabio Natali |
| 2023-05-11 | gnu: texlive-ddphonism: Replace deprecated input.•••* gnu/packages/tex.scm (texlive-ddphonism)[propagated-inputs]: Replace
deprecated texlive-latex-tools by texlive-tools.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-totpages: Replace deprecated input.•••* gnu/packages/tex.scm (texlive-totpages)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-totcount: Replace deprecated input.•••* gnu/packages/tex.scm (texlive-totcount)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-ncctools: Replace deprecated input.•••* gnu/packages/tex.scm (texlive-ncctools)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-soulutf8: Replace deprecated inputs.•••* gnu/packages/tex.scm (texlive-soulutf8)[propagated-inputs]: Replace
deprecated texlive-generic-etexcmds by texlive-etexcmds and deprecated
texlive-generic-infwarerr by texlive-infwarerr.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-xetex: Replace deprecated inputs.•••* gnu/packages/tex.scm (texlive-xetex)[propagated-inputs]: Replace deprecated
texlive-generic-atbegshi by texlive-atbegshi and deprecated
texlive-latex-atveryend by texlive-atveryend.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: python-skranger: Install library.•••* gnu/packages/python-xyz.scm (python-skranger)[arguments]: Install the
library that we've just built.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-skranger.•••* gnu/packages/python-xyz.scm (python-skranger): New variable.
| Ricardo Wurmus |
| 2023-05-11 | Revert "gnu: Add python-pytest-enabler."•••This reverts commit 0a8c46e89f095a9ec3632d43920ac3cce49f16d5.
An older version of python-pytest-enabler already exists in (gnu packages
check).
| Ricardo Wurmus |
| 2023-05-11 | gnu: lagrange: Update to 1.15.9.•••* gnu/packages/web-browsers.scm (lagrange): Update to 1.15.9.
| Efraim Flashner |
| 2023-05-11 | gnu: mutt: Update to 2.2.10.•••* gnu/packages/mail.scm (mutt): Update to 2.2.10.
| Efraim Flashner |
| 2023-05-11 | gnu: qiv: Update to 2.3.3.•••* gnu/packages/image-viewers.scm (qiv): Update to 2.3.3.
| Efraim Flashner |
| 2023-05-11 | gnu: git-annex: Update to 10.20230407.•••* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20230407.
| Efraim Flashner |
| 2023-05-11 | gnu: global: Update to 6.6.10.•••* gnu/packages/code.scm (global): Update to 6.6.10.
| Efraim Flashner |
| 2023-05-11 | gnu: Add python-omnipath.•••* gnu/packages/python-web.scm (python-omnipath): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-inflect.•••* gnu/packages/python-xyz.scm (python-inflect): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-docrep.•••* gnu/packages/python-xyz.scm (python-docrep): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-pytest-enabler.•••* gnu/packages/python-check.scm (python-pytest-enabler): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-adjusttext.•••* gnu/packages/python-xyz.scm (python-adjusttext): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: barrier: Include NULL compatibility.•••Fixes <https://bugs.gnu.org/63244>.
Reported by <john@fremlin.org>
* gnu/packages/barrier.scm (barrier)[arguments]: Use G-exp, add phases
including NULL macro.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Simon Tournier |
| 2023-05-11 | gnu: git: Update to 2.40.1 [security fixes].•••Fixes CVE-2023-25652 and CVE-2023-29007.
* gnu/packages/version-control.scm (git): Update to 2.40.1.
(git-minimal)[arguments]: Rewrite to use gexps. In
'remove-unusable-perl-commands' phase, make "git-add--interactive"
removal conditional.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2023-05-11 | gnu: laby: Add patch for being able to execute game code.•••Reported upstream at https://github.com/sgimenez/laby/pull/68
* gnu/packages/patches/laby-use-tmpdir-from-runtime.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/games.scm (laby)[source]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ivana Drazovic |
| 2023-05-11 | gnu: laby: Make laby function in pure environments.•••* gnu/packages/games.scm (laby)
[build-system]: Switch to 'glib-or-gtk-build-system'.
[inputs]: Add 'gdk-pixbuf' and 'librsvg-for-system'.
[arguments]: Wrap to use SVG-enabled pixbuf loaders.cache.
Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ivana Drazovic |
| 2023-05-11 | gnu: laby: Use new package style.•••* gnu/packages/games.scm (laby)[arguments]: Use gexps.
Use "this-package-input" to locate package input.
Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ivana Drazovic |
| 2023-05-11 | gnu: Add oneDNN.•••* gnu/packages/machine-learning.scm (oneapi-dnnl): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
| zamfofex |
