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2023-04-25gnu: python-importlib-resources: Update to 5.12.0....* gnu/packages/python-xyz.scm (python-importlib-resources): Update to 5.12.0. [build-system]: Use pyproject-build-system. [arguments]: Add phase to avoid "pip install". [native-inputs]: Remove python-toml; add python-flake8, python-pytest, python-pytest-black, python-pytest-checkdocs, python-pytest-cov, python-pytest-enabler, python-pytest-flake8, python-pytest-mypy, and python-setuptools-57. [propagated-inputs]: Add python-zipp. Ricardo Wurmus
2023-04-25gnu: scribus: Fix build with latest poppler....* gnu/packages/patches/scribus-1.5.8-poppler-22.03.0.patch, gnu/packages/patches/scribus-1.5.8-poppler-22.04.0.patch, gnu/packages/patches/scribus-1.5.8-poppler-22.09.0.patch, gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-1.patch, gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/scribus.scm (scribus)[source]: Add patches. [arguments]: Enable WANT_CPP17 option. Ricardo Wurmus
2023-04-24gnu: gnucash: Update help installation prefix....The help installation prefix was changed upstream to match the XDG 'help-spec' specification (see: https://www.freedesktop.org/wiki/Specifications/help-spec/). * gnu/packages/gnucash.scm (gnucash) [arguments]: Adjust install-docs phase. Maxim Cournoyer
2023-04-24gnu: python-tlsh: Fix build....* gnu/packages/python-xyz.scm (python-tlsh) [build-system]: Switch to python-build-system. [arguments]: Remove #:out-of-source. Remove install phase override. Add a configure, chdir and adjust the check phase override. [inputs]: Delete field. [native-inputs]: New field. Maxim Cournoyer
2023-04-24gnu: sicp: Fix build....* gnu/packages/scheme.scm (sicp) [build-system]: Use copy-build-system. [native-inputs]: Remove source input. [arguments]: Remove #:modules and #:builder arguments. Add #:install-plan and #:phases arguments. Patch out obsolete call. Maxim Cournoyer
2023-04-24gnu: python-pdbpp: Update to 0.10.3-0.e1c2e34....* gnu/packages/python-xyz.scm (python-pdbpp): Update to 0.10.3-0.e1c2e34. [arguments]: Add pretend-version phase. Maxim Cournoyer
2023-04-24gnu: docker-compose: Use python-jsonschema-3 to fix build....* gnu/packages/docker.scm (docker-compose) [inputs]: Replace python-jsonschema with python-jsonschema-3. Maxim Cournoyer
2023-04-24gnu: Add python-jsonschema-3....* gnu/packages/python-xyz.scm (python-jsonschema-3): New variable. Maxim Cournoyer
2023-04-24Merge remote-tracking branch 'origin/master' into core-updatesAndreas Enge
2023-04-24gnu: emacs-git-timemachine: Update to 4.11-0-13769fb6....This fixes #62932; command-execute: Symbol’s function definition is void: define-transient-command * gnu/packages/emacs-xyz.scm (emacs-git-timemachine)[source]: Update outdated source URI. Update to commit "13769fb603ae88c64566529eae4525ce88026e86". The 4.11 latest release is four years old. Janneke Nieuwenhuizen
2023-04-24gnu: python-plotly-2.4.1: Patch for Python 3.10 changes....* gnu/packages/graph.scm (python-plotly-2.4.1)[arguments]: Add phase 'python-compatibility. Ricardo Wurmus
2023-04-24gnu: multiqc: Update to 1.14....* gnu/packages/bioinformatics.scm (multiqc): Update to 1.14. [build-system]: Use pyproject-build-system. [arguments]: Simplify check phase; restore sanity-check phase. [propagated-inputs]: Add python-rich-click. [native-inputs]: Update test data. Ricardo Wurmus
2023-04-24gnu: Add python-rich-click....* gnu/packages/python-xyz.scm (python-rich-click): New variable. Ricardo Wurmus
2023-04-24gnu: macs: Patch version check for Python....* gnu/packages/bioinformatics.scm (macs)[source]: Patch check for Python > 3.6. Ricardo Wurmus
2023-04-24gnu: salmon: Update to 1.10.1....* gnu/packages/bioinformatics.scm (salmon): Update to 1.10.1. [inputs]: Replace cereal-1.3.0 with cereal; add htscodecs. [native-inputs]: Update hash of pufferfish sources. Ricardo Wurmus
2023-04-24gnu: Add htscodecs....* gnu/packages/bioinformatics.scm (htscodecs): New variable. Ricardo Wurmus
2023-04-24gnu: cereal-1.3.0: Update doctest.h....* gnu/packages/serialization.scm (cereal-1.3.0)[native-inputs]: Add gcc-10 and the sources of the cereal package. [arguments]: Add a phase to replace the included doctest.h with the variant from the cereal sources; disable -Werror. [source]: Delete included doctest.h. Ricardo Wurmus
2023-04-24gnu: cereal: Use GCC 10....* gnu/packages/serialization.scm (cereal)[native-inputs]: Add gcc-10. Ricardo Wurmus
2023-04-24gnu: python-check-manifest: Update to 0.49....* gnu/packages/python-xyz.scm (python-check-manifest): Update to 0.49. [propagated-inputs]: Remove python-tomli. John Kehayias
2023-04-24gnu: python-eventlet: Skip two failing tests....* gnu/packages/python-xyz.scm (python-eventlet)[arguments]: In 'check' phase, skip two more tests which are failing with Python 3.10 and have upstream bug reports. John Kehayias
2023-04-24gnu: mumi: Add bash-minimal to inputs....* gnu/packages/mail.scm (mumi)[inputs]: Add bash-minimal. Arun Isaac
2023-04-24gnu: mumi: Update to 0.0.5-2.85d5efb....* gnu/packages/mail.scm (mumi): Update to 0.0.5-2.85d5efb. Arun Isaac
2023-04-24gnu: mumi: Move to Savannah....* gnu/packages/mail.scm (source, home-page): Move to Savannah. Arun Isaac
2023-04-24gnu: dezyne: Update to 2.17.2....* gnu/packages/dezyne.scm (dezyne): Update to 2.17.2. Janneke Nieuwenhuizen
2023-04-24gnu: python-shiboken-2: Do not rely on _Py_Mangle being available....* gnu/packages/patches/python-shiboken-2-compat.patch: Fix the patch according to upstream. Signed-off-by: Andreas Enge <andreas@enge.fr> Josselin Poiret
2023-04-24gnu: openshot: Update to 3.1.0....* gnu/packages/audio.scm (libopenshot-audio): Update to 0.3.1. * gnu/packages/video.scm (libopenshot): Update to 0.3.1. (openshot): Update to 3.1.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Andy Tai
2023-04-24gnu: eid-mw: Update to 5.1.10....* gnu/packages/security-token.scm (eid-mw): Update to 5.1.10 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Raphaël Mélotte
2023-04-24gnu: fatrace: Update to 0.17.0....* gnu/packages/monitoring.scm (fatrace): Update to 0.17.0 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Raphaël Mélotte
2023-04-24gnu: openmpi: Update to 4.1.5....* gnu/packages/mpi.scm (openmpi): Update to 4.1.5. Ludovic Courtès
2023-04-24gnu: python-magic: Update to 0.4.27....* gnu/packages/patches/python-magic-python-bytecode.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Unregister it. * gnu/packages/python-xyz.scm (python-magic): Update to 0.4.27. [source]<patches>: Remove field. [#:phases]<check>: Do not invoke ‘tests.py’. Signed-off-by: Andreas Enge <andreas@enge.fr> Liliana Marie Prikler
2023-04-24gnu: openldap-for-linphone: Hide it....We don't want this to show up when searching for "openldap". * gnu/packages/openldap.scm (openldap-for-linphone): Wrap in HIDDEN-PACKAGE and add a comment. Ricardo Wurmus
2023-04-24gnu: inspekt3d: Adjust to changes in libfive....* gnu/packages/engineering.scm (inspekt3d)[arguments]: Use G-expression; patch file to avoid loading removed extension; adjust name of libfive library. Ricardo Wurmus
2023-04-24gnu: inspekt3d: Simplify snippet....* gnu/packages/engineering.scm (inspekt3d)[source]: Simplify snippet. Ricardo Wurmus
2023-04-24gnu: libfive: Update to 0-5.b1ea998....* gnu/packages/engineering.scm (libfive): Update to 0-5.b1ea998. [arguments]: Set HOME variable to fix autocompilation; set GUILE_CCACHE_DIR to override default target directory for compiled Guile files; add phases 'fix-library-location and 'install-scm-files. Ricardo Wurmus
2023-04-24gnu: python-sure: Update to 2.0.1....* gnu/packages/python-xyz.scm (python-sure): Update to 2.0.1. [native-inputs]: Add python-rednose. John Kehayias
2023-04-24gnu: python-boltons: Update to 23.0.0....* gnu/packages/python-xyz.scm (python-boltons): Update to 23.0.0. John Kehayias
2023-04-23gnu: python-pynndescent: Update to 0.5.10....* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.10. John Kehayias
2023-04-23gnu: python-configargparse: Update to 1.5.3....* gnu/packages/python-xyz.scm (python-configargparse): Update to 1.5.3. [build-system]: Switch to pyproject-build-system. [arguments]: Remove previous 'check' phase. [native-inputs]: Add python-mock and python-pytest, remove python-pyyaml. John Kehayias
2023-04-23gnu: python-scikit-learn: Update to 1.2.2....* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.2.2. Leo Famulari
2023-04-23gnu: python-joblib: Update to 1.1.1....* gnu/packages/python-xyz.scm (python-joblib): Update to 1.1.1. Leo Famulari
2023-04-23gnu: python-ecdsa: Fix faulty commit....Fix previous commit, which did not properly add the test to be skipped and repeated the existing skipped test. There is only one new test to be skipped. * gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: In the 'check' phase, properly format the string for skipped tests. John Kehayias
2023-04-23gnu: python-ecdsa: Skip two failing tests....* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: In 'check' phase, skip a couple more tests. John Kehayias
2023-04-23gnu: libmediainfo and mediainfo: Update to 23.03....* gnu/packages/video.scm (libmediainfo, mediainfo): Update to 23.03. Leo Famulari
2023-04-23gnu: libmediainfo and mediainfo: Fix build....* gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Add a shebang to the autogen.sh script in the 'change-to-build-dir' phases. Leo Famulari
2023-04-23gnu: eyed3: Update to 0.9.7....* gnu/packages/mp3.scm (eyed3): Update to 0.9.7. [propagated-inputs]: Remove python-grako, python-magic, and python-pathlib. Leo Famulari
2023-04-23gnu: OpenImageIO: Use the correct source hash....This is a followup to commit 5fda088fb17f0f5ad5cbb47314bada5f25afdb68 * gnu/packages/graphics.scm (openimageio)[source]: Fix the hash. Leo Famulari
2023-04-23gnu: OpenImageIO: Update to 2.2.21.0....This fixes the build with GCC 11. * gnu/packages/graphics.scm (openimageio): Update to 2.2.21.0. Leo Famulari
2023-04-23gnu: OpenColorIO: Fix build with GCC 11....* gnu/packages/patches/opencolorio-fix-build-with-gcc11.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image-processing.scm (opencolorio)[source]: Use it. Leo Famulari
2023-04-23gnu: shotwell: Fix build....* gnu/packages/gnome.scm (shotwell)[native-inputs]: Add vala. Leo Famulari
2023-04-24gnu: liblinphone: Restore special openldap variant....This is a partial revert of commit f2166cfacea03dcc399d1858d27ff473ebfc0679. * gnu/packages/openldap.scm (openldap-for-linphone): Restore this variable. * gnu/packages/linphone.scm (liblinphone)[inputs]: Replace openldap with openldap-for-linphone. Ricardo Wurmus