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2018-03-19gnu: mcron: Update to 1.1 and deprecate "mcron2".•••* gnu/packages/guile.scm (mcron): Update to 1.1. [native-inputs]: Add TZDATA-FOR-TESTS. [arguments]: New field. (mcron2): Define using 'deprecated-package'. * gnu/services/mcron.scm: Replace 'mcron2' with 'mcron'. * doc/guix.texi (Scheduled Job Execution): Likewise. * gnu/tests/base.scm (%mcron-os): Remove comment about mcron2. Ludovic Courtès
2018-03-19gnu: linux-libre: Update to 4.15.11.•••* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.11. (%linux-libre-hash): Update hash. Mark H Weaver
2018-03-19gnu: linux-libre@4.14: Update to 4.14.28.•••* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.28. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2018-03-19gnu: linux-libre@4.9: Update to 4.9.88.•••* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.88. Mark H Weaver
2018-03-19gnu: linux-libre@4.4: Update to 4.4.122.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.122. Mark H Weaver
2018-03-19gnu: weechat: Update to 2.1.•••* gnu/packages/irc.scm (weechat): Update to 2.1. Tobias Geerinckx-Rice
2018-03-19gnu: perl-xml-compile-soap: Update to 3.24.•••* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24. Tobias Geerinckx-Rice
2018-03-19gnu: perl-xml-simple: Update to 2.25.•••* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25. Tobias Geerinckx-Rice
2018-03-19gnu: perl-math-random-secure: Fix typo.•••* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix the spelling of ‘millennia’. Tobias Geerinckx-Rice
2018-03-19gnu: pigx-bsseq: Update to 0.0.7.•••* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7. [inputs]: Add coreutils, sed, and grep. Ricardo Wurmus
2018-03-19gnu: bismark: Fix references to gunzip.•••* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to gunzip executable. [inputs]: Add gzip. Ricardo Wurmus
2018-03-19gnu: pigx-scrnaseq: Update to 0.0.3.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3. [inputs]: Add coreutils and perl. Ricardo Wurmus
2018-03-19patchelf: Use 'https' for source uri.•••* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri. Efraim Flashner
2018-03-19gnu: python-paramiko: Update to 2.1.5.•••* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko): Update to 2.1.5. Leo Famulari
2018-03-19gnu: python-pynacl: Update to 1.2.0.•••* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0. [native-inputs]: Add python-hypothesis. Leo Famulari
2018-03-19gnu: pigx: Update to 0.0.2.•••* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2. Ricardo Wurmus
2018-03-19gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1.•••* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: bash-completion: Update to 2.8.•••* gnu/packages/bash.scm (bash-completion): Update to 2.8. * gnu/packages/patches/bash-completion-directories.patch: Update context. Tobias Geerinckx-Rice
2018-03-19gnu: hdparm: Update to 9.55.•••* gnu/packages/linux.scm (hdparm): Update to 9.55. Tobias Geerinckx-Rice
2018-03-19gnu: libtirpc: Update to 1.0.3.•••* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3. [source]: Remove patch. * gnu/packages/patches/libtirpc-missing-headers.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-03-19gnu: libtirpc: Always return #t from phases.•••* gnu/packages/onc-rpc.scm (libtirpc)[arguments]: End phase with #t. Tobias Geerinckx-Rice
2018-03-19gnu: perl-file-basedir: Update to 0.08.•••* gnu/packages/freedesktop.scm (perl-file-basedir): Update to 0.08. Tobias Geerinckx-Rice
2018-03-19gnu: enlightenment: Update to 0.22.2.•••* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.2. Tobias Geerinckx-Rice
2018-03-19gnu: python-oslo.utils: Update to 3.36.0.•••* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.0. Tobias Geerinckx-Rice
2018-03-19gnu: python-oslo.i18n: Update to 3.20.0.•••* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.20.0. Tobias Geerinckx-Rice
2018-03-19gnu: r-withr: Update to 2.1.2.•••* gnu/packages/statistics.scm (r-withr): Update to 2.1.2. Tobias Geerinckx-Rice
2018-03-19gnu: tilda: Update to 1.4.1.•••* gnu/packages/terminals.scm (tilda): Update to 1.4.1. [arguments]: Rename 'autogen phase to 'bootstrap. Clean up 'bootstrap phase. Efraim Flashner
2018-03-19gnu: pigx-chipseq: Update to 0.0.8.•••* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8. [inputs]: Add python-magic, python-xlrd, and trim-galore. [arguments]: Disable tests. Ricardo Wurmus
2018-03-19gnu: pigx-scrnaseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-bsseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-chipseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-rnaseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: Add ghc-pandoc-citeproc-with-pandoc-1.•••* gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable. Ricardo Wurmus
2018-03-19gnu: Add r-abbyyr.•••* gnu/packages/cran.scm (r-abbyyr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Vijayalakshmi Vedantham
2018-03-18gnu: youtube-dl: Update to 2018.03.14.•••* gnu/packages/video.scm (youtube-dl): Update to 2018.03.14. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Sohom Bhattacharjee
2018-03-18gnu: shotwell: Update to 0.28.0.•••* gnu/packages/gnome.scm (shotwell): Update to 0.28.0. Christopher Baines
2018-03-18gnu: Add ruby-ruby-engine.•••* gnu/packages/ruby.scm (ruby-ruby-engine): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-rake.•••* gnu/packages/ruby.scm (ruby-rake): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-erubis.•••* gnu/packages/ruby.scm (ruby-erubis): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-sporkmonger-rack-mount.•••* gnu/packages/ruby.scm (ruby-sporkmonger-rack-mount): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-creole.•••* gnu/packages/ruby.scm (ruby-creole): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-contest.•••* gnu/packages/ruby.scm (ruby-contest): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-rack-protection.•••* gnu/packages/ruby.scm (ruby-rack-protection): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-rack-test.•••* gnu/packages/ruby.scm (ruby-rack-test): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-asciidoctor.•••* gnu/packages/ruby.scm (ruby-asciidoctor): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-asciimath.•••* gnu/packages/maths.scm (ruby-asciimath): New variable. Ben Woodcroft
2018-03-17gnu: icecat: Fix CVE-2018-{5146,5147}, etc.•••Includes fixes for CVE-2018-5146 and CVE-2018-5147. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository. Mark H Weaver
2018-03-17gnu: Add terraform-docs.•••* gnu/packages/terraform.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Christopher Baines
2018-03-17gnu: Add go-github-com-hashicorp-hcl.•••* gnu/packages/golang.scm (go-github-com-hashicorp-hcl): New variable. Christopher Baines
2018-03-17gnu: Add go-github-com-tj-docopt.•••* gnu/packages/golang.scm (go-github-com-tj-docopt): New variable. Christopher Baines
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