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2024-01-24gnu: singular: Update to 4.3.2p10....* gnu/packages/algebra.scm (singular): Update to 4.3.2p10. Change-Id: I196d31e3f5605dd51385146ce091d63a4e9eb340 Andreas Enge
2024-01-24gnu: Add r-papaja....* gnu/packages/cran.scm (r-papaja): New variable. Co-authored-by: Lars-Dominik Braun <lars@6xq.net> Change-Id: Ib5b3a6ff8d52052cf135b2ba36cad3ce295ed6d4 Ricardo Wurmus
2024-01-24gnu: Add r-tinylabels....* gnu/packages/cran.scm (r-tinylabels): New variable. Change-Id: Ie86de4daaf132cd32f896573be747f35e725258e Ricardo Wurmus
2024-01-24gnu: Add r-rmdfiltr....* gnu/packages/cran.scm (r-rmdfiltr): New variable. Change-Id: I59b92e9364ca4e74a98b80b6cca1a883ab3caec3 Ricardo Wurmus
2024-01-24gnu: python-chaospy: Ignore deprecation warnings....* gnu/packages/statistics.scm (python-chaospy)[arguments]: Add phase 'dont-treat-deprecation-warnings-as-error. Change-Id: Id06404f9e47f7084fefc2e72032882d49e5b546b Ricardo Wurmus
2024-01-24gnu: pynac: Update to 0.7.29....* gnu/packages/sagemath.scm (pynac): Update to 0.7.29. Change-Id: I3bf2675aea9d8a07fdcfa08471c9d1ca7725e1f7 Andreas Enge
2024-01-24gnu: python-pyts: Update to 0.13.0....* gnu/packages/python-science.scm (python-pyts): Update to 0.13.0. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; enable all tests. [propagated-inputs]: Remove python-matplotlib. Change-Id: Iafcc047d8bb14e1eef514fd92aa53f8fda38eab0 Ricardo Wurmus
2024-01-24gnu: python-scikit-learn-extra: Update to 0.3.0-1.0f95d8d....* gnu/packages/machine-learning.scm (python-scikit-learn-extra): Update to 0.3.0-1.0f95d8d. [arguments]: Move test flags out of 'check phase and to #:test-flags. [propagated-inputs]: Add python-packaging. Change-Id: I4081a9364a0646d0c6960a3d155315e8eff8af59 Ricardo Wurmus
2024-01-24gnu: nyxt: Update to 3.11.1....* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.1. [inputs]: Remove sbcl-fset and sbcl-mk-string-metrics. Add gst-libav, gst-plugins-bad, gst-plugins-base, gst-plugins-good, gst-plugins-ugly. [arguments]: Update 'configure-tests' phase. [home-page]: Update URL. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: If35d6f0153339b311057bea05562fefb215c3f0d Andre A. Gomes
2024-01-24gnu: cl-lass: Update to 0.6.0-1.1f2418d....* gnu/packages/lisp-xyz.scm (sbcl-lass): Update to 0.6.0-1.1f2418d. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: I51dfe84b9194b4d94d76502ffd47f88cbc1583fb Andre A. Gomes
2024-01-23gnu: python-pydicom: Update to 2.4.4....* gnu/packages/python-science.scm (python-pydicom): Update to 2.4.4. Change-Id: I996115fb3bdf0bd61d2b2dcdb2500b31ce104597 Sharlatan Hellseher
2024-01-23gnu: python-pydicom: Simplify package style....* gnu/packages/python-science.scm (python-pydicom)[build-system]: Swap to pyproject-build-system. [description]: Simplify wording, indent. Change-Id: I7ef413ea2da6cbb83eb33424c559f7ac5ed549cb Sharlatan Hellseher
2024-01-23gnu: python-pynetdicom: Simplify package style....* gnu/package/python-science.scm (python-pynetdicom)[build-system]: Swap to pyproject-build-system. [description]: Simplify wording, indent. Change-Id: If4e80d06edb0080685d0695f30abc2f9db669f45 Sharlatan Hellseher
2024-01-23gnu: Add python-pynetdicom....* gnu/packages/python-science.scm (python-pynetdicom): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Antero Mejr
2024-01-23gnu: Add flash....* gnu/packages/bioinformatics.scm (flash): New variable. Change-Id: Id657ba7850031ad24b4333b6bc79401511e00a85 Ricardo Wurmus
2024-01-23gnu: Add isolator....* gnu/packages/bioinformatics.scm (isolator): New variable. Change-Id: I950baca5b6898576f358b3364b1fe541b3333298 Ricardo Wurmus
2024-01-23gnu: Add metal....* gnu/packages/bioinformatics.scm (metal): New variable. Change-Id: I70fd30c18303f61a9f6720e70d4b4e57140a7140 Ricardo Wurmus
2024-01-23gnu: Add randfold....* gnu/packages/bioinformatics.scm (randfold): New variable. Change-Id: If2cea9c8d5323296015dc21ea7a3d1b677ae2798 Ricardo Wurmus
2024-01-23gnu: Add python-pyfasta....* gnu/packages/bioinformatics.scm (python-pyfasta): New variable. Change-Id: Ib2ab0a6eb250309633d5be33c18409227bce84ba Ricardo Wurmus
2024-01-23gnu: Add python-fcsparser....* gnu/packages/bioinformatics.scm (python-fcsparser): New variable. Change-Id: I87ed7f10bbfdf7d689cb6289a5f5ad31872f9de0 Ricardo Wurmus
2024-01-23gnu: Add lsgkm....* gnu/packages/bioinformatics.scm (lsgkm): New variable. Change-Id: I0ea35354c7856e7425567cd4ac27ab7fc2ab0d9e Ricardo Wurmus
2024-01-23gnu: icecat: Update to 115.7.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2024-0741, CVE-2024-0742, CVE-2024-0746, CVE-2024-0747, CVE-2024-0749, CVE-2024-0750, CVE-2024-0751, CVE-2024-0753, and CVE-2024-0755. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. Mark H Weaver
2024-01-23Revert "gnu: source-highlight: Wrap scripts."...This package causes the rebuild of more than 9000 packages. This reverts commit 367bc2d198f57bc34522441820f761b61fed0ce0. Efraim Flashner
2024-01-23gnu: kubo: Update to 0.18.0....* gnu/packages/ipfs.scm (kubo): Update to 0.18.0. [inputs]: Add go-github-com-gorilla-mux. Change-Id: I4eccdfcf9eadbdf25728fcca766c5238efb0d57f Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Artyom V. Poptsov
2024-01-23gnu: source-highlight: Wrap scripts....* gnu/packages/pretty-print.scm (source-highlight)[arguments]: Add a phase to wrap shell scripts so they can find the source-hightlight binary. [inputs]: Add guile-3.0. Change-Id: Ia8d006d969385210d5c82b4a0dd1f78178306ac2 Efraim Flashner
2024-01-23gnu: trurl: Update to 0.9....* gnu/packages/curl.scm (trurl): Update to 0.9. Change-Id: Ieb0f19e6d48897dceb32e317613a301f521c9b94 Sharlatan Hellseher
2024-01-23gnu: Add eddylab-squid....* gnu/packages/bioinformatics.scm (eddylab-squid): New variable. Change-Id: Icb02f42fc95d2001a639e22608a01ef9074158bc Ricardo Wurmus
2024-01-23gnu: Add python-magic-impute....* gnu/packages/bioinformatics.scm (python-magic-impute): New variable. Change-Id: Iba5240e9920a1045078c736553cb1d56069963b5 Ricardo Wurmus
2024-01-23gnu: Add python-graphtools....* gnu/packages/graph.scm (python-graphtools): New variable. Change-Id: If08b1460447702f7ec2e64f013a52a7065076b01 Ricardo Wurmus
2024-01-23gnu: Add python-tasklogger....* gnu/packages/python-xyz.scm (python-tasklogger): New variable. Change-Id: I53319b70b7788090e8873a912d7c56044c0bb5b2 Ricardo Wurmus
2024-01-23gnu: python-nose2: Update to 0.14.0....* gnu/packages/check.scm (python-nose2): Update to 0.14.0. [native-inputs]: Remove python-coverage. [propagated-inputs]: Remove python-six. Change-Id: I15a30723fe49cca9929524e543d12c9e2f4b02ca Ricardo Wurmus
2024-01-23gnu: python-scikit-learn: Disable one test....This test fails with the upgrade of scipy. * gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Disable test_singular_matrix test. Change-Id: I47627403826bb5c52f4d578399c7cabaa3f8838d Ricardo Wurmus
2024-01-23gnu: Add python-pygsp....* gnu/packages/graph.scm (python-pygsp): New variable. Change-Id: I8dd195216617e5cdb4a7453ecbe23cd9ff9e06a3 Ricardo Wurmus
2024-01-23gnu: Add r-scenic....* gnu/packages/bioinformatics.scm (r-scenic): New variable. Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303 Ricardo Wurmus
2024-01-23gnu: python-scipy: Update to 1.12.0....* gnu/packages/python-science.scm (python-scipy): Update to 1.12.0. [propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy, python-numpydoc, python-pydata-sphinx-theme, python-pydevtool, python-rich-click, python-sphinx, python-threadpoolctl, and python-typing-extensions; remove python-pyparsing. [native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov, and python-pytest-xdist; remove python-threadpoolctl. Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210 Ricardo Wurmus
2024-01-23gnu: r-desctools: Update to 0.99.53....* gnu/packages/statistics.scm (r-desctools): Update to 0.99.53. Change-Id: I425b37907b51a93fafa193d217bdf68636f608a7 Ricardo Wurmus
2024-01-23gnu: r-plotly: Update to 4.10.4....* gnu/packages/statistics.scm (r-plotly): Update to 4.10.4. Change-Id: Idd10685b1ab521056e0468f0c0c188543c11c96a Ricardo Wurmus
2024-01-23gnu: r-xml: Update to 3.99-0.16.1....* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.16.1. Change-Id: I2936eac03ec20b091e45b920f946d92028099973 Ricardo Wurmus
2024-01-23gnu: r-rsqlite: Update to 2.3.5....* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.5. Change-Id: I43e95bc4ff0b0dc36cf9f3de1705d63bc5681286 Ricardo Wurmus
2024-01-23gnu: r-roxygen2: Update to 7.3.1....* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.1. Change-Id: I5d23ee576beb4dc4dc1e49d13cc38ffef0d33512 Ricardo Wurmus
2024-01-23gnu: r-maldiquant: Update to 1.22.2....* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.2. Change-Id: Ia483cff36bb3a2cbf4b691bb4832ce98757aabe0 Ricardo Wurmus
2024-01-23gnu: r-modeldata: Update to 1.3.0....* gnu/packages/cran.scm (r-modeldata): Update to 1.3.0. Change-Id: Ibaef5366948e9ca45325d279a99f14417ca43e8e Ricardo Wurmus
2024-01-23gnu: r-yardstick: Update to 1.3.0....* gnu/packages/cran.scm (r-yardstick): Update to 1.3.0. [propagated-inputs]: Add r-withr. Change-Id: I00a5d74cca4396e685df32f85d998004a3e94edc Ricardo Wurmus
2024-01-23gnu: r-lightgbm: Update to 4.3.0....* gnu/packages/cran.scm (r-lightgbm): Update to 4.3.0. Change-Id: I9da6fbcf9558f1ed47b41abd7183f3c53ba1ec67 Ricardo Wurmus
2024-01-23gnu: r-rstanarm: Update to 2.32.1....* gnu/packages/cran.scm (r-rstanarm): Update to 2.32.1. Change-Id: Ib83276a66add397aeacd830803f94f713f0c22e3 Ricardo Wurmus
2024-01-23gnu: r-matrixextra: Update to 0.1.15....* gnu/packages/cran.scm (r-matrixextra): Update to 0.1.15. Change-Id: I72c274e3075cc40d0f6aafb8199a4594c1a518c6 Ricardo Wurmus
2024-01-23gnu: r-graphlayouts: Update to 1.1.0....* gnu/packages/cran.scm (r-graphlayouts): Update to 1.1.0. Change-Id: I5056c2158af15aeed9d5b53a52149e67d6d50b56 Ricardo Wurmus
2024-01-23gnu: r-mcmcpack: Update to 1.7-0....* gnu/packages/cran.scm (r-mcmcpack): Update to 1.7-0. Change-Id: I2e480dee05c23158b9ab58de5f9a90e623a7f6b2 Ricardo Wurmus
2024-01-23gnu: r-ggfun: Update to 0.1.4....* gnu/packages/cran.scm (r-ggfun): Update to 0.1.4. Change-Id: I08cf695cd03bf28aaa2f2b7b4a35c6632a7027c4 Ricardo Wurmus
2024-01-23gnu: r-rmpfr: Update to 0.9-5....* gnu/packages/cran.scm (r-rmpfr): Update to 0.9-5. Change-Id: I32ba06d98406989aca7129f9f647e836e06663f8 Ricardo Wurmus
generated by cgit v1.2.3 (git 2.46.2) at 2024-11-10 10:57:07 +0000