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2023-01-13gnu: r-signac: Update to 1.9.0-1.af41427....* gnu/packages/bioinformatics.scm (r-signac): Update to 1.9.0-1.af41427. [propagated-inputs]: Remove r-ggforce, r-ggrepel, r-ggseqlogo, r-lsa, r-qlcmatrix, and r-seurat; add r-vctrs. Ricardo Wurmus
2023-01-13gnu: sent: Install some more useful documentation....* gnu/packages/suckless.scm (sent)[arguments]: Install the README.md in a new 'install-doc' phase. Leo Famulari
2023-01-13gnu: linux-libre: Update to 6.1....* gnu/packages/linux.scm (linux-libre-version, linux-libre-gnu-revision, linux-libre-pristine-source, linux-libre-source, linux-libre): Use linux-libre 6.1. Leo Famulari
2023-01-13gnu: linux-libre 5.15: Update to 5.15.87....* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.87. (linux-libre-5.15-pristine-source): Update hash. Leo Famulari
2023-01-13gnu: linux-libre: Update to 6.0.19....* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.19. (linux-libre-6.0-pristine-source): Update hash. Leo Famulari
2023-01-13gnu: linux-libre 6.1: Update to 6.1.5....* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.5. (linux-libre-6.1-pristine-source): Update hash. Leo Famulari
2023-01-13gnu: python-cellbender: Update source hash....The git tag was moved in-place from d82893c05b4e6b912f7f165dc2cd7c36f29cfc52 to d92cfc5a55c8b1771348468035993c52df975170. * gnu/packages/bioinformatics.scm (python-cellbender)[source](sha256): Update. Marius Bakke
2023-01-13gnu: rdma-core: Update to 44.0....* gnu/packages/linux.scm (rdma-core): Update to 44.0. Marius Bakke
2023-01-13gnu: rdma-core: Remove input labels....* gnu/packages/linux.scm (rdma-core)[arguments]: Don't reference rst2man by label. Reindent. [native-inputs, inputs]: Remove labels. Marius Bakke
2023-01-13gnu: ovmf-arm: Fix syntax error on armhf-linux....* gnu/packages/firmware.scm (ovmf-arm)[arguments]: Don't add an empty set-env phase when building for armhf-linux. Marius Bakke
2023-01-13gnu: ovmf-aarch64: Fix syntax error on aarch64-linux....* gnu/packages/firmware.scm (ovmf-aarch64)[arguments]: Don't add an empty set-env phase when building for aarch64. Marius Bakke
2023-01-13gnu: ungoogled-chromium: Update to 109.0.5414.74-1....* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M109. (%chromium-version): Set to 109.0.5414.74. (%arch-revision): Bump to latest. (%arch-patches): Add one patch. (%ungoogled-origin): Update hash. (ungoogled-chromium)[source]: Likewise. [arguments]: Disable H264 for WebRTC. Delete one directory. Remove obsolete substitution. [native-inputs]: Add PYTHON-PYYAML. Marius Bakke
2023-01-12gnu: Add dislocker....* gnu/packages/linux.scm (dislocker): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Petr Hodina
2023-01-12gnu: Add hydra....* gnu/packages/password-utils.scm (hydra): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Petr Hodina
2023-01-12gnu: guile-aa-tree: Update Guile version to 3.0 ....* gnu/packages/guile-xyz.scm (guile-aa-tree): Update Guile version to 3.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Nicolas Graves
2023-01-12gnu: guile-aa-tree: Restrict install to aa-tree.scm....* gnu/packages/guile-xyz.scm (guile-aa-tree): [native-inputs]: Remove guile-2.2. [inputs]: Add guile-2.2. [arguments]: (scheme-file-regexp): Restrict install to aa-tree.scm [arguments]: (phases): Add check phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Nicolas Graves
2023-01-12gnu: gloo: Add dependency on rdma-core....* gnu/packages/machine-learning.scm (gloo)[inputs]: Add RDMA-CORE when supported. [arguments]: Pass '-DUSE_IBVERBS=ON' when RDMA-CORE is present. Switch to gexps. Ludovic Courtès
2023-01-12gnu: gloo: Build the shared library only....* gnu/packages/machine-learning.scm (gloo)[arguments]: Pass '-DBUILD_SHARED_LIBS=ON'. Ludovic Courtès
2023-01-12gnu: gromacs: Mark as tunable....* gnu/packages/chemistry.scm (gromacs)[properties]: New field. Ludovic Courtès
2023-01-12gnu: Add cellsnp-lite....* gnu/packages/bioinformatics.scm (cellsnp-lite): New variable. Simon Tournier
2023-01-12gnu: guile-email-latest: Remove package....* gnu/packages/guile-xyz.scm (guile-email-latest): Delete variable. * gnu/packages/mail.scm (mumi)[inputs]: Replace guile-email-latest with guile-email. Arun Isaac
2023-01-12gnu: Add r-jqr....* gnu/packages/cran.scm (r-jqr): New variable. Ricardo Wurmus
2023-01-12gnu: monero-gui: Add menu entry file....* gnu/packages/finance.scm (monero-gui)[arguments]: Update 'install' phase to add icons and menu entry file. Guillaume Le Vaillant
2023-01-12gnu: Remove xfce4-embed-plugin....The last release of this plugin appears to be 2015, and the package no longer builds as it depends on libxfce4ui-1 which was removed when gtk+-2 support was dropped in 2019. * gnu/packages/xfce.scm (xfce4-embed-plugin): Delete variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Kaelyn Takata
2023-01-12gnu: Remove xfce4-equake-plugin....The last release of this plugin appears to be 2013, and the package no longer builds as it depends on libxfce4ui-1 which was removed when gtk+-2 support was dropped in 2019. * gnu/packages/xfce.scm (xfce4-equake-plugin): Delete variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Kaelyn Takata
2023-01-12gnu: kirc: Update to 0.3.2....* gnu/packages/irc.scm (kirc): Update to 0.3.2. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> jgart
2023-01-12gnu: xpra: Update to 4.4.3....gnu/packages/xorg.scm (xpra): Update to 4.4.3. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Andy Tai
2023-01-12gnu: litterbox: Update to 1.9....* gnu/packages/irc.scm (litterbox): Update to 1.9. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> jgart
2023-01-12gnu: catgirl: Update to 2.1....* gnu/packages/irc.scm (catgirl): Update to 2.1. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> jgart
2023-01-12gnu: weechat: Update to 3.8....* gnu/packages/irc.scm (weechat): Update to 3.8. [arguments]: Do not build tests any more: since version 3.8, ‘make test’ is successful when tests are not built. [native-inputs]: Remove dependency on cpputest as tests are not built any more. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Sébastien Helleu
2023-01-11gnu: emacs-enh-ruby-mode: Fix base version to 20191111....* gnu/packages/emacs-xyz.scm (emacs-enh-ruby-mode): Fix base version to 20191111. Reported-by: Jelle Licht <jlicht@fsfe.org> Maxim Cournoyer
2023-01-11gnu: Add ghc-parsec....* gnu/packages/haskell-xyz.scm (ghc-parsec): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> jgart
2023-01-10gnu: Add emacs-enh-ruby-mode....* gnu/packages/emacs-xyz.scm (emacs-enh-ruby-mode): New variable. Maxim Cournoyer
2023-01-08gnu: muse-sequencer: Also run on Wayland....* gnu/packages/music.scm (muse-sequencer)[inputs]: Add qtwayland-5. Reported by f1refly in #guix. Tobias Geerinckx-Rice
2023-01-10gnu: weechat-wee-slack: Update to 2.9.1....* gnu/packages/messaging.scm (weechat-wee-slack): Update to 2.9.1. Arun Isaac
2023-01-10gnu: Add waveshare-dtoverlays....* gnu/packages/raspberry-pi.scm (waveshare-dtoverlays): New variable. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Maxim Cournoyer
2023-01-10gnu: patman: Fix incomplete get-maintainer patch....The full set of patches already merged into the U-Boot is included for simplicity and avoiding mistakes like the previous one, where a conflicting hunk got dropped, causing the following error when running patman: WARNING: Unknown setting get_maintainer_script * gnu/packages/bootloaders.scm (u-boot) [source]: Replace the u-boot-patman-fix-help.patch, u-boot-patman-local-conf.patch and u-boot-patman-get-maintainer.patch with u-boot-patman-guix-integration.patch. * gnu/local.mk (dist_patch_DATA): Update patch registrations. * gnu/packages/patches/u-boot-patman-fix-help.patch: Delete file. * gnu/packages/patches/u-boot-patman-get-maintainer.patch: Likewise. * gnu/packages/patches/u-boot-patman-local-conf.patch: Likewise. * gnu/packages/patches/u-boot-patman-guix-integration.patch: New file. Reported-by: Jelle Licht <jlicht@fsfe.org> Maxim Cournoyer
2023-01-10gnu: services: Fix fail2ban configuration serialization....This fixes a regression from 543d971ed2a1d9eb934af1f51930741d7cc4e7ef whereby match-lambda due to configuration field reordering. * gnu/services/security.scm: [serialize-fail2ban-ignore-cache-configuration]: Switch to match-record. [serialize-fail2ban-jail-filter-configuration]: Switch to match-record. [serialize-fail2ban-jail-action-configuration]: Switch to match-record. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> muradm
2023-01-10gnu: onedrive: Update to 2.4.23....* gnu/packages/sync.scm (onedrive): Update to 2.4.23. Efraim Flashner
2023-01-10gnu: darktable: Update to 4.2.0....* gnu/packages/photo.scm (darktable): Update to 4.2.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alex Devaure
2023-01-10gnu: Add guile-scheme-json-rpc....* gnu/packages/guile-xyz.scm (guile-scheme-json-rpc): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Abhishek Cherath
2023-01-10gnu: Add gophernicus....* gnu/packages/web.scm (gophernicus): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2023-01-10gnu: Add vger....* gnu/packages/web.scm (vger): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2023-01-10services: unattended-upgrade: Add 'operating-system-expression' field....* gnu/services/admin.scm (<unattended-upgrade-configuration>) [operating-system-expression]: New field. (unattended-upgrade-mcron-jobs): Honor it. * doc/guix.texi (Unattended Upgrades): Document it. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Giacomo Leidi
2023-01-10services: git-daemon: Deprecate 'git-daemon-service' procedure....* gnu/services/version-control.scm (git-daemon-service): Define with 'define-deprecated' * doc/guix.texi (Version Control Services): Replace with 'git-daemon-service-type' Signed-off-by: Ludovic Courtès <ludo@gnu.org> Bruno Victal
2023-01-10gnu: neovim: Update to 0.8.2....* gnu/packages/vim.scm (neovim): Update to 0.8.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Luis Henrique Gomes Higino
2023-01-10gnu: gromacs: Remove input labels and use gexps....* gnu/packages/chemistry.scm (gromacs)[arguments]: Turn into gexps. [native-inputs]: Remove labels. Remove (package-source googletest). Ludovic Courtès
2023-01-10gnu: gromacs: Update to 2022.4....* gnu/packages/chemistry.scm (gromacs): Update to 2022.4. * gnu/packages/patches/gromacs-tinyxml2.patch: Adjust accordingly. Ludovic Courtès
2023-01-10gnu: keepassxc: Enable wayland support....* gnu/packages/password-utils.scm (keepassxc)[inputs]: Add qtwayland-5. Jonathan Brielmaier
2023-01-10gnu: Add ftxui....* gnu/packages/cpp.scm (ftxui): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Artyom V. Poptsov