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2017-12-19gnu: r-yaml: Update to 2.1.16....* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16. Ricardo Wurmus
2017-12-19gnu: r-reshape2: Update to 1.4.3....* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3. Ricardo Wurmus
2017-12-19gnu: r-digest: Update to 0.6.13....* gnu/packages/statistics.scm (r-digest): Update to 0.6.13. Ricardo Wurmus
2017-12-19gnu: r-vcd: Update to 1.4-4....* gnu/packages/cran.scm (r-vcd): Update to 1.4-4. Ricardo Wurmus
2017-12-19gnu: r-proxy: Update to 0.4-20....* gnu/packages/cran.scm (r-proxy): Update to 0.4-20. Ricardo Wurmus
2017-12-19gnu: r-biomart: Update to 2.34.1....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1. [propagated-inputs]: Add r-httr. Ricardo Wurmus
2017-12-19gnu: r-gviz: Update to 1.22.2....* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2. Ricardo Wurmus
2017-12-19gnu: r-gqtlstats: Update to 1.10.1....* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.10.1. Ricardo Wurmus
2017-12-19gnu: r-rtracklayer: Update to 1.38.2....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2. Ricardo Wurmus
2017-12-19gnu: r-limma: Update to 3.34.4....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4. Ricardo Wurmus
2017-12-19gnu: r-edger: Update to 3.20.2....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2. Ricardo Wurmus
2017-12-19gnu: r-biocstyle: Update to 2.6.1....* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1. Ricardo Wurmus
2017-12-19gnu: r-dexseq: Update to 1.24.2....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2. Ricardo Wurmus
2017-12-19gnu: r-vegan: Update to 2.4-5....* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5. Ricardo Wurmus
2017-12-19gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation....* gnu/packages/xfce.scm (xfce4-session)[arguments]: Add make-flags to disable Gtk+ icon cache generation. Danny Milosavljevic
2017-12-19services: urandom-seed: Try using a HWRNG to seed the Linux CRNG at boot....* gnu/services/base.scm (urandom-seed-shepherd-service): Try to read from '/dev/hwrng' at boot, as a supplement to any saved random seed. * doc/guix.texi (Base Services): Document the new feature. Leo Famulari
2017-12-19gnu: wxmaxima: Update to 17.10.1....* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1. Kei Kebreau
2017-12-19gnu: Add quakespasm....* gnu/packages/games.scm (quakespasm): New variable. Signed-off-by: Kei Kebreau <kkebreau@posteo.net> nee
2017-12-19gnu: gajim: Update to 0.16.9....* gnu/packages/messaging.scm (gajim): Update to 0.16.9. Ricardo Wurmus
2017-12-19gnu: python-nbxmpp: Update to 0.6.1....* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.1. Ricardo Wurmus
2017-12-19gnu: dino: Update to 0.0-3.f25fadde2....* gnu/packages/messaging.scm (dino): Update to 0.0-3.f25fadde2. Ricardo Wurmus
2017-12-19gnu: pcsc-lite: Update to 1.8.23....* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23. [arguments]: Disable libsystemd check. Ricardo Wurmus
2017-12-19gnu: antiword: Fix broken embedded directory name....* gnu/packages/textutils.scm (antiword)[arguments]: Replace "configure" phase to substitute reference to "/usr/share/antiword" with the actual directory in the store. Ricardo Wurmus
2017-12-19gnu: Update gwl to 0.1.1....* gnu/packages/package-management.scm (gwl): Update to 0.1.1. Roel Janssen
2017-12-19gnu: emulation-station: Add missing file-name field....* gnu/packages/games.scm (emulation-station)[source]: Add missing file-name field. Efraim Flashner
2017-12-19gnu: Update r-cowplot to 0.9.2....* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2. Roel Janssen
2017-12-19tests: Adjust php-fpm test to new nginx API....Fixes <https://bugs.gnu.org/29769>. Reported by Mark H Weaver <mhw@netris.org>. This is a followup to 8b223ceac4ff0781e95d69362875f87cff03f4d6. * gnu/tests/web.scm (%php-fpm-nginx-server-blocks): Turn 'listen' into a list. Ludovic Courtès
2017-12-19gnu: mpd: Update to 0.20.13....* gnu/packages/mpd.scm (mpd): Update to 0.20.13. Leo Famulari
2017-12-19gnu: keepassxc: Update to 2.2.4....* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.4. Leo Famulari
2017-12-18gnu: GnuPG pinentry: Update to 1.1.0....* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3, pinentry-qt): Update to 1.1.0. Leo Famulari
2017-12-18gnu: linux-libre: Update to 4.14.7....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.7. (%linux-libre-hash): Update hash. Mark H Weaver
2017-12-18gnu: linux-libre@4.9: Update to 4.9.70....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.70. Mark H Weaver
2017-12-18gnu: linux-libre@4.4: Update to 4.4.106....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.106. Mark H Weaver
2017-12-19gnu: termite: Update to 13....* gnu/packages/terminals.scm (termite): Update to 13. Marius Bakke
2017-12-19gnu: pcsc-lite: Update to 1.8.23....* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23. [arguments]<#:configure-flags>: Add "--disable-libsystemd". [license]: Adjust to removed sd-daemon files. Marius Bakke
2017-12-19gnu: qemu: Update to 2.10.2....* gnu/packages/patches/qemu-CVE-2017-15118.patch, gnu/packages/patches/qemu-CVE-2017-15119.patch, gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/virtualization.scm (qemu): Update to 2.10.2. [source](patches): Remove obsolete. Marius Bakke
2017-12-18gnu: libjpeg-turbo: Update to 1.5.3....* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3. Marius Bakke
2017-12-18gnu: libsodium: Update to 1.0.16....* gnu/packages/crypto.scm (libsodium): Update to 1.0.16. Marius Bakke
2017-12-18gnu: expect: Update to 5.45.3....* gnu/packages/tcl.scm (expect): Update to 5.45.3. Marius Bakke
2017-12-18gnu: deutex: Update to 5.1.0....* gnu/packages/games.scm (deutex): Update to 5.1.0. Kei Kebreau
2017-12-18gnu: emacspeak: Update to 47.0....* gnu/packages/emacs.scm (emacspeak): Update to 47.0. [source]: Remove snippet. [arguments]: Set SHELL environment variable. Kei Kebreau
2017-12-18gnu: rsync: Patch CVE-2017-{16548,17433,17434}....* gnu/packages/rsync.scm (rsync)[source]: Add patches. [properties]: Mark CVE-2017-15994 as not relevant. * gnu/packages/patches/rsync-CVE-2017-16548.patch, gnu/packages/patches/rsync-CVE-2017-17433.patch, gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. Efraim Flashner
2017-12-18gnu: psm: Update home page URL....* gnu/packages/linux.scm (psm)[home-page]: Update. [source](uri): Use it. Ludovic Courtès
2017-12-18gnu: Fix ambiguous 'zip' reference....* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1). Ludovic Courtès
2017-12-18system: examples: Add a template for BeagleBone Black....* gnu/system/examples/beaglebone-black.tmpl: New file. * Makefile.am (EXAMPLES): Add it. * gnu/system/install.scm (/etc/configuration-files): Add it. Mathieu Othacehe
2017-12-18gnu: claws-mail: Update to 3.16.0....* gnu/packages/mail.scm (claws-mail): Update to 3.16.0. Tobias Geerinckx-Rice
2017-12-18services: nginx: Allow to add raw content to the server blocks....* doc/guix.texi (Web Services): Document 'raw-content'. * gnu/services/web.scm (<nginx-server-configuration>)[raw-content]: New field. (emit-nginx-server-config): Add it. Clément Lassieur
2017-12-18services: nginx: Replace 'http-port' and 'https-port' with 'listen'....* doc/guix.texi (Web Services, Version Control Services): Update accordingly. * gnu/services/certbot.scm (certbot-nginx-server-configurations): Likewise. * gnu/services/version-control.scm (%cgit-configuration-nginx): Likewise. * gnu/services/web.scm (<nginx-server-configuration>, emit-nginx-server-config): Likewise. * gnu/tests/version-control.scm (%cgit-configuration-nginx, %git-nginx-configuration): Likewise. * gnu/tests/web.scm (%nginx-servers, %php-fpm-nginx-server-blocks): Likewise. Clément Lassieur
2017-12-18gnu: r-seurat: Update to 2.1.0....* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0. [propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica, r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr, r-rcppeigen, r-fastica. Ricardo Wurmus
2017-12-18gnu: Add r-diffusionmap....* gnu/packages/graph.scm (r-diffusionmap): New variable. Ricardo Wurmus
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