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2021-07-29gnu: Add pthreadpool....* gnu/packages/parallel.scm (pthreadpool): New variable. * gnu/packages/patches/pthreadpool-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-07-29gnu: Add FXDiv....* gnu/packages/maths.scm (fxdiv): New variable. * gnu/packages/patches/fxdiv-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-07-29gnu: r-xcms: Update to 3.14.1....* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.1. Ricardo Wurmus
2021-07-29gnu: r-reportingtools: Update to 2.32.1....* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.1. Ricardo Wurmus
2021-07-29gnu: php: Update to 7.4.22 [security fixes]....* gnu/packages/php.scm (php): Update to 7.4.22. Tobias Geerinckx-Rice
2021-07-29system: Add (gnu system setuid)....I flubbed and somehow when including the patch series, this got dropped. Oops... should fix things again. * gnu/system/setuid.scm: New file. Christopher Lemmer Webber
2021-07-29services: Migrate to <setuid-program>....* gnu/services/dbus.scm (dbus-setuid-programs, polkit-setuid-programs): Return setuid-programs. * gnu/services/desktop.scm (enlightenment-setuid-programs): Return setuid-programs. (%desktop-services)[mount-setuid-helpers]: Use setuid-programs. * gnu/services/docker.scm (singularity-setuid-programs): Return setuid-programs. * gnu/services/xorg.scm(screen-locker-setuid-programs): Return setuid-programs. * gnu/system.scm (%setuid-programs): Return setuid-programs. * doc/guix.texi (Setuid Programs, operating-system Reference): Replace 'list of G-expressions' with 'list of <setuid-program>'. Brice Waegeneire
2021-07-29services: setuid: More configurable setuid support....New record <setuid-program> with fields for setting the specific user and group, as well as specifically selecting the setuid and setgid bits, for a program within the setuid-program-service. * gnu/services.scm (setuid-program-file-like-deprecated): New function. (setuid-program-service-type): Make use of setuid-program->activation-gexp. Adjust the extend property to handle <setuid-program>. * gnu/build/activation.scm (activate-setuid-programs): Update to expect a <setuid-record> list for each program entry. * gnu/system.scm: (operating-system-setuid-programs): Renamed to %operating-system-setuid-programs and replace it with new procedure. (operating-system-default-essential-services, hurd-default-essential-services): Replace operating-system-setuid-programs with %operating-system-setuid-programs. * gnu/system/setuid.scm: New file. * doc/guix.texi (Setuid Programs): Document <setuid-program>. Co-authored-by: Brice Waegeneire <brice@waegenei.re> Chris Lemmer-Webber
2021-07-29gnu: r-matrixstats: Update to 0.60.0....* gnu/packages/statistics.scm (r-matrixstats): Update to 0.60.0. Ricardo Wurmus
2021-07-29gnu: r-e1071: Update to 1.7-8....* gnu/packages/statistics.scm (r-e1071): Update to 1.7-8. Ricardo Wurmus
2021-07-29gnu: r-protolite: Update to 2.1.1....* gnu/packages/cran.scm (r-protolite): Update to 2.1.1. Ricardo Wurmus
2021-07-29gnu: r-lwgeom: Update to 0.2-7....* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-7. Ricardo Wurmus
2021-07-29gnu: r-mgsub: Update to 1.7.3....* gnu/packages/cran.scm (r-mgsub): Update to 1.7.3. Ricardo Wurmus
2021-07-29gnu: r-matrixcalc: Update to 1.0-5....* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-5. Ricardo Wurmus
2021-07-29gnu: r-leiden: Update to 0.3.9....* gnu/packages/cran.scm (r-leiden): Update to 0.3.9. Ricardo Wurmus
2021-07-29gnu: r-dalex: Update to 2.3.0....* gnu/packages/cran.scm (r-dalex): Update to 2.3.0. Ricardo Wurmus
2021-07-29gnu: r-sf: Update to 1.0-2....* gnu/packages/cran.scm (r-sf): Update to 1.0-2. Ricardo Wurmus
2021-07-29gnu: r-summarytools: Update to 1.0.0....* gnu/packages/cran.scm (r-summarytools): Update to 1.0.0. Ricardo Wurmus
2021-07-29gnu: r-ggeffects: Update to 1.1.1....* gnu/packages/cran.scm (r-ggeffects): Update to 1.1.1. Ricardo Wurmus
2021-07-29gnu: r-pillar: Update to 1.6.2....* gnu/packages/cran.scm (r-pillar): Update to 1.6.2. Ricardo Wurmus
2021-07-29gnu: r-vioplot: Update to 0.3.7....* gnu/packages/cran.scm (r-vioplot): Update to 0.3.7. Ricardo Wurmus
2021-07-29gnu: r-stringdist: Update to 0.9.7....* gnu/packages/cran.scm (r-stringdist): Update to 0.9.7. Ricardo Wurmus
2021-07-29gnu: r-broom: Update to 0.7.9....* gnu/packages/cran.scm (r-broom): Update to 0.7.9. Ricardo Wurmus
2021-07-29gnu: r-rpostgresql: Update to 0.7....* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7. Ricardo Wurmus
2021-07-29gnu: r-arrow: Update to 5.0.0....* gnu/packages/cran.scm (r-arrow): Update to 5.0.0. Ricardo Wurmus
2021-07-29gnu: apache-arrow: Update to 5.0.0....* gnu/packages/databases.scm (apache-arrow): Update to 5.0.0. Ricardo Wurmus
2021-07-29gnu: vim-guix-vim: Update to 0.3.0....* gnu/packages/vim.scm (vim-guix-vim): Update to 0.3.0. [source]: Update source uri. Efraim Flashner
2021-07-29gnu: julia-weakrefstrings: Update to 1.1.0....* gnu/packages/julia-xyz.scm (julia-weakrefstrings): Update to 1.1.0. Efraim Flashner
2021-07-29gnu: julia-typedtables: Update to 1.4.0....* gnu/packages/julia-xyz.scm (julia-typedtables): Update to 1.4.0. Efraim Flashner
2021-07-29gnu: julia-staticarrays: Update to 1.2.9....* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.9. Efraim Flashner
2021-07-29gnu: julia-static: Update to 0.3.0....* gnu/packages/julia-xyz.scm (julia-static): Update to 0.3.0. Efraim Flashner
2021-07-29gnu: julia-sortingalgorithms: Update to 1.0.1....* gnu/packages/julia-xyz.scm (julia-sortingalgorithms): Update to 1.0.1. Efraim Flashner
2021-07-29gnu: julia-simpletraits: Update to 0.9.4....* gnu/packages/julia-xyz.scm (julia-simpletraits): Update to 0.9.4. Efraim Flashner
2021-07-29gnu: julia-recipespipeline: Update to 0.3.4....* gnu/packages/julia-xyz.scm (julia-recipespipeline): Update to 0.3.4. Efraim Flashner
2021-07-29gnu: julia-plotutils: Update to 1.0.11....* gnu/packages/julia-xyz.scm (julia-plotutils): Update to 1.0.11. Efraim Flashner
2021-07-29gnu: julia-offsetarrays: Update to 1.10.3....* gnu/packages/julia-xyz.scm (julia-offsetarrays): Update to 1.10.3. Efraim Flashner
2021-07-29gnu: julia-mutablearithmetics: Update to 0.2.20....* gnu/packages/julia-xyz.scm (julia-mutablearithmetics): Update to 0.2.20. Efraim Flashner
2021-07-29gnu: julia-matrixfactorizations: Update to 0.8.4....* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): Update to 0.8.4. Efraim Flashner
2021-07-29gnu: julia-lazyarrays: Update to 0.21.11....* gnu/packages/julia-xyz.scm (julia-lazyarrays): Update to 0.21.11. Efraim Flashner
2021-07-29gnu: julia-json3: Update to 1.9.0....* gnu/packages/julia-xyz.scm (julia-json3): Update to 1.9.0. Efraim Flashner
2021-07-29gnu: julia-irtools: Update to 0.4.3....* gnu/packages/julia-xyz.scm (julia-irtools): Update to 0.4.3. Efraim Flashner
2021-07-29gnu: julia-imagecore: Update to 0.9.1....* gnu/packages/julia-xyz.scm (julia-imagecore): Update to 0.9.1. Efraim Flashner
2021-07-29gnu: julia-http: Update to 0.9.12....* gnu/packages/julia-xyz.scm (julia-http): Update to 0.9.12. Efraim Flashner
2021-07-29gnu: julia-genericschur: Update to 0.5.1....* gnu/packages/julia-xyz.scm (julia-genericschur): Update to 0.5.1. Efraim Flashner
2021-07-29gnu: julia-finitediff: Update to 2.8.1....* gnu/packages/julia-xyz.scm (julia-finitediff): Update to 2.8.1. Efraim Flashner
2021-07-29gnu: julia-fillarrays: Update to 0.12.1....* gnu/packages/julia-xyz.scm (julia-fillarrays): Update to 0.12.1. Efraim Flashner
2021-07-29gnu: julia-exprtools: Update to 0.1.6....* gnu/packages/julia-xyz.scm (julia-exprtools): Update to 0.1.6. Efraim Flashner
2021-07-29gnu: julia-dictionaries: Update to 0.3.10....* gnu/packages/julia-xyz.scm (julia-dictionaries): Update to 0.3.10. Efraim Flashner
2021-07-29gnu: julia-dataapi: Update to 1.7.0....* gnu/packages/julia-xyz.scm (julia-dataapi): Update to 1.7.0. Efraim Flashner
2021-07-29gnu: julia-constructionbase: Update to 1.3.0....* gnu/packages/julia-xyz.scm (julia-constructionbase): Update to 1.3.0. Efraim Flashner
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