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2016-04-19gnu: Rename Java packages to match new naming specification.•••* gnu/packages/bioinformatics.scm (htsjdk): Rename to... (java-htsjdk): ...this. (ngs-java): Rename to... (java-ngs): ...this. (ncbi-vdb)[arguments,inputs]: Use new name. * gnu/packages/java.scm (swt): Rename to... (java-swt): ...this. * gnu/packages/music.scm (tuxguitar)[make-flags,inputs,arguments]: Use new name of package "swt". Hartmut Goebel
2016-04-19gnu: python2-plastid: Propagate setuptools.•••* gnu/packages/bioinformatics.scm (python2-plastid)[native-inputs]: Move python2-setuptools from here... [propagated-inputs]: ...to here. Ricardo Wurmus
2016-04-19gnu: r: Update to 3.2.5.•••* gnu/packages/statistics.scm (r): Update to 3.2.5. Ricardo Wurmus
2016-04-19gnu: Add icedtea-8.•••* gnu/packages/java.scm (icedtea-8): New variable. Ricardo Wurmus
2016-04-19gnu: Add python-plastid.•••* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): New variables. Ricardo Wurmus
2016-04-19gnu: Add python-twobitreader.•••* gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader): New variables. Ricardo Wurmus
2016-04-18gnu: Add cabextract.•••* gnu/packages/compression.scm (cabextract): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic
2016-04-18gnu: Add dillo.•••* gnu/packages/dillo.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Kei Yamashita
2016-04-18gnu: fltk: Add Xft support.•••* gnu/packages/fltk.scm (fltk)[inputs]: Add libxft. Signed-off-by: Leo Famulari <leo@famulari.name> Kei Yamashita
2016-04-18gnu: vlc: Make 'plugins.dat' generation reproducible.•••Fixes <http://bugs.gnu.org/23307>. * gnu/packages/video.scm (vlc)[arguments]: Add #:phases. Ludovic Courtès
2016-04-18gnu: vlc: Do not capture the build time.•••* gnu/packages/video.scm (vlc)[source]: Add 'snippet'. Ludovic Courtès
2016-04-18gnu: vlc: Build against ffmpeg 2.8.•••Fixes <http://bugs.gnu.org/23256>. Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * gnu/packages/video.scm (vlc): Use FFMPEG-2.8 instead of FFMPEG. Ludovic Courtès
2016-04-18gnu: ffmpeg: Re-add 2.8.6.•••* gnu/packages/video.scm (ffmpeg-2.8): New variable. Ludovic Courtès
2016-04-18gnu: ruby-bio-commandeer: Update to 0.1.3.•••* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.1.3. Ben Woodcroft
2016-04-18mapped-devices: LUKS partitions can be designated by their UUID.•••* gnu/system/mapped-devices.scm (device-mapping-service-type): Add 'modules' and 'imported-modules' fields to 'shepherd-service'. (open-luks-device): Use 'find-partition-by-luks-uuid' to lookup the partition when SOURCE is a bytevector. * gnu/system/linux-initrd.scm (base-initrd): Augment 'use-modules' form. * doc/guix.texi (Mapped Devices): Give example with a UUID. Ludovic Courtès
2016-04-18mapped-devices: 'mapped-device-service' takes a <mapped-device>.•••* gnu/system/mapped-devices.scm (device-mapping-service): Take a <mapped-device> instead of 3 parameters. (device-mapping-service-type): Adjust accordingly. * gnu/system.scm (device-mapping-services): Adjust accordingly. Ludovic Courtès
2016-04-18services: Move 'device-mapping-service' to (gnu system mapped-devices).•••* gnu/services/base.scm (device-mapping-service-type) (device-mapping-service): Move to... * gnu/system/mapped-devices.scm (device-mapping-service-type): (device-mapping-service): ... here. New variables. Ludovic Courtès
2016-04-18system: Move 'luks-device-mapping' to (gnu system mapped-devices).•••* gnu/system.scm (open-luks-device, close-luks-device) (luks-device-mapping): Move to... * gnu/system/mapped-devices.scm: ... here. New file. Ludovic Courtès
2016-04-18system: Add (gnu system mapped-devices).•••* gnu/system/file-systems.scm (<mapped-device>, <mapped-device-type>): Move to... * gnu/system/mapped-devices.scm: ... here. New file. * gnu/system.scm, gnu/services/base.scm, gnu/system/linux-initrd.scm: Use it. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. * gnu.scm (%public-modules): Add it. Ludovic Courtès
2016-04-17gnu: Add python-pyusb.•••* gnu/packages/libusb.scm (python-pyusb, python2-pyusb): New variables. Ricardo Wurmus
2016-04-17gnu: khard: Update to 0.9.0.•••* gnu/packages/mail.scm (khard): Update to 0.9.0. Leo Famulari
2016-04-17gnu: python-vobject: Update to 0.9.2.•••* gnu/packages/python.scm (python-vobject, python2-vobject): Update to 0.9.2. Leo Famulari
2016-04-17gnu: openssh: Fix CVE-2015-8325.•••* gnu/packages/patches/openssh-CVE-2015-8325.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh): Use it. Leo Famulari
2016-04-17gnu: Add recordmydesktop.•••* gnu/packages/video.scm (recordmydesktop): New variable. Ludovic Courtès
2016-04-17install: Use 'beta' instead of 'alpha'.•••Suggested by Jelle Licht <jlicht@fsfe.org>. * gnu/system/install.scm (installation-services): Say 'beta' instead of 'alpha' and make the warning less scary. Ludovic Courtès
2016-04-17gnu: python-pandas: Fix test failures.•••* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: New file. * gnu-system.am (dist_patch_DATA): Register it. * gnu/packages/python.scm (python-pandas)[source]: Add patch. Ricardo Wurmus
2016-04-17gnu: icedtea-7: Update to 2.6.5.•••* gnu/packages/java.scm (icedtea-7): Update to 2.6.5. [inputs]: Add libxcomposite. Ricardo Wurmus
2016-04-17services: 'console-keymap-service' takes multiple files.•••* gnu/services/base.scm (console-keymap-service-type): Type procedure takes a list of files instead of a single file. (console-keymap-service): Take 'files' as rest arguments. * doc/guix.texi (Base Services): Improve documentation of 'console-keymap-service'. Alex Kost
2016-04-17gnu: kbd: Update to 2.0.3.•••* gnu/packages/linux.scm (kbd): Update to 2.0.3. Alex Kost
2016-04-17gnu: kbd: Use 'modify-phases'.•••* gnu/packages/linux.scm (kbd)[arguments]: Use 'modify-phases'. Alex Kost
2016-04-17file-systems: Add 'find-partition-by-luks-uuid'.•••* gnu/build/file-systems.scm (%luks-endianness, %luks-header-size): New macros. (%luks-magic): New variable. (sub-bytevector, read-luks-header, luks-header-uuid): New procedures. (partition-predicate): Add 'read' parameter; wrap it with 'ENOENT-safe'. Use it instead of 'read-ext2-superblock*'. (read-ext2-superblock*): Remove. (partition-label-predicate, partition-uuid-predicate): Pass 'read-ext2-superblock' as the first argument. (partition-luks-uuid-predicate): New variable. (find-partition-by-luks-uuid): New procedure. Ludovic Courtès
2016-04-17file-systems: Separate ENOENT catching from ext2 superblock reads.•••* gnu/build/file-systems.scm (ENOENT-safe): New procedure. (read-ext2-superblock*): Rewrite in terms of it. Ludovic Courtès
2016-04-16gnu: Add marst.•••* gnu/packages/marst.scm: New file. * gnu-system.am: Add it. John Darrington
2016-04-16gnu: linux: Add case for arm64.•••* gnu/packages/linux.scm (system->linux-architecture): Add "aarch64". Manolis Ragkousis
2016-04-16gnu: bootstrap: Add the location of ld.so on arm64.•••* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add the dynamic linker for aarch64-linux. Manolis Ragkousis
2016-04-16gnu: Add tcc-wrapper.•••* gnu/packages/c.scm (tcc-wrapper): New variable. Ludovic Courtès
2016-04-16gnu: Add tcc.•••* gnu/packages/c.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Ludovic Courtès
2016-04-15gnu: Add Beast.•••* gnu/packages/music.scm (beast): New variable. Ricardo Wurmus
2016-04-15gnu: Add rapicorn.•••* gnu/packages/graphics.scm (rapicorn): New variable. Ricardo Wurmus
2016-04-15gnu: Add libpng-1.2.•••* gnu/packages/image.scm (libpng-1.2): New variable. Ricardo Wurmus
2016-04-15gnu: Add emacs-ffap-rfc-space.•••* gnu/packages/emacs.scm (emacs-ffap-rfc-space): New variable. Signed-off-by: Alex Kost <alezost@gmail.com> Chris Marusich
2016-04-15gnu: Add emacs-rfcview.•••* gnu/packages/emacs.scm (emacs-rfcview): New variable. Signed-off-by: Alex Kost <alezost@gmail.com> Chris Marusich
2016-04-15gnu: Add openttd.•••* gnu/packages/games.scm (openttd-engine): New variable (private). (openttd): Inherit it. New variable (public). Signed-off-by: Alex Kost <alezost@gmail.com> Albin Söderqvist
2016-04-15gnu: fontforge: Swap giflib input for libungif.•••* gnu/packages/fontutils.scm (fontforge)[inputs]: Remove giflib, add libungif. [arguments]: Adjust 'set-library-path' phase accordingly. Eric Bavier
2016-04-15gnu: fontforge: Remove 'patch-configure' phase.•••* gnu/packages/fontutils.scm (fontforge)[arguments]: Remove 'patch-configure' phase, which became unnecessary in the latest versions. Eric Bavier
2016-04-15gnu: fontforge: Install 'showttf' tool.•••* gnu/packages/fontutils.scm (fontforge)[arguments]: Add 'build-contrib' phase. Eric Bavier
2016-04-15gnu: fontforge: Use modify-phases.•••* gnu/packages/fontutils.scm (fontforge)[arguments]: Use modify-phases. Eric Bavier
2016-04-15gnu: Add font-fantasque-sans.•••* gnu/packages/fonts.scm (font-fantasque-sans): New variable. Eric Bavier
2016-04-15gnu: fontforge: Make SVG builds reproducible.•••* gnu/packages/patches/fontforge-svg-modtime.patch: New file. * gnu/packages/fontutils.scm (fontforge)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier
2016-04-15gnu: Add woff2.•••* gnu/packages/fontutils.scm (woff2): New variable. * gnu/packages/patches/woff2-libbrotli.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier