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2022-07-03gnu: java-xpp3: Download source from ci.guix.gnu.org....The www.extreme.indiana.edu site is now serving a redirect: This site has been deprecated. You can access an archive of this site at https://web.archive.org/web/20210225153105/https://www.extreme.indiana.edu/. Because this isn't a 404, as it probably should be, guix follows this redirect and gets some content that isn't the file it asked for. To avoid this incorrect behaviour, switch to using a ci.guix.gnu.org URL for the file instead. * gnu/packages/xml.scm (java-xpp3)[source]: Switch the uri to ci.guix.gnu.org. Christopher Baines
2022-07-03gnu: curl: Skip failing test on 32-bit architectures....* gnu/packages/curl.scm (curl-7.84.0)[arguments]: Use custom 'skip-failing-tests phase on all 32-bit architectures. Efraim Flashner
2022-07-03gnu: curl: Fix build on some systems....* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around implicit function declaration. * gnu/packages/patches/curl-easy-lock.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-07-03gnu: Add sqls 0.2.18....* gnu/packages/databases (sqls): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> muradm
2022-07-03gnu: Add go-github-com-sourcegraph-jsonrpc2 0.1.0....* gnu/packages/golang.scm (go-github-com-sourcegraph-jsonrpc2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> muradm
2022-07-03gnu: Add go-github-com-gorilla-websocket 1.5.0....* gnu/packages/golang.scm (go-github-com-gorilla-websocket): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> muradm
2022-07-02gnu: r-ifultools: Patch in removed macros to fix build....* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility macros. Ricardo Wurmus
2022-07-02gnu: r-with-tests: Update to 4.2.1....* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1. Ricardo Wurmus
2022-07-02gnu: r-tcgabiolinks: Update to 2.24.3....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3. Ricardo Wurmus
2022-07-02gnu: r-bionetstat: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1. Ricardo Wurmus
2022-07-02gnu: r-bgeedb: Update to 2.22.3....* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3. Ricardo Wurmus
2022-07-02gnu: r-ggbio: Update to 1.44.1....* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1. Ricardo Wurmus
2022-07-02gnu: r-rsubread: Update to 2.10.4....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4. Ricardo Wurmus
2022-07-02gnu: r-biosigner: Update to 1.24.2....* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment. Ricardo Wurmus
2022-07-02gnu: r-ropls: Update to 1.28.2....* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment. Ricardo Wurmus
2022-07-02gnu: r-genomicscores: Update to 2.8.2....* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2. [propagated-inputs]: Add r-httr. Ricardo Wurmus
2022-07-02gnu: r-clusterprofiler: Update to 4.4.4....* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4. Ricardo Wurmus
2022-07-02gnu: r-batchelor: Update to 1.12.3....* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3. Ricardo Wurmus
2022-07-02gnu: r-matrixgenerics: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1. Ricardo Wurmus
2022-07-02gnu: r-zellkonverter: Update to 1.6.3....* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3. Ricardo Wurmus
2022-07-02gnu: r-simplifyenrichment: Update to 1.6.1....* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1. Ricardo Wurmus
2022-07-02gnu: r-rtracklayer: Update to 1.56.1....* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1. Ricardo Wurmus
2022-07-02gnu: r-organismdbi: Update to 1.38.1....* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1. Ricardo Wurmus
2022-07-02gnu: r-limma: Update to 3.52.2....* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2. Ricardo Wurmus
2022-07-02gnu: r-ensembldb: Update to 2.20.2....* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2. Ricardo Wurmus
2022-07-02gnu: r-gld: Update to 2.6.5....* gnu/packages/statistics.scm (r-gld): Update to 2.6.5. Ricardo Wurmus
2022-07-02gnu: r-clubsandwich: Update to 0.5.7....* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7. Ricardo Wurmus
2022-07-02gnu: r-ranger: Update to 0.14.1....* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1. Ricardo Wurmus
2022-07-02gnu: r-car: Update to 3.1-0....* gnu/packages/statistics.scm (r-car): Update to 3.1-0. Ricardo Wurmus
2022-07-02gnu: r-gtools: Update to 3.9.2.2....* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.2. Ricardo Wurmus
2022-07-02gnu: r-r-rsp: Update to 0.45.0....* gnu/packages/statistics.scm (r-r-rsp): Update to 0.45.0. Ricardo Wurmus
2022-07-02gnu: r-r-utils: Update to 2.12.0....* gnu/packages/statistics.scm (r-r-utils): Update to 2.12.0. Ricardo Wurmus
2022-07-02gnu: r-r-methodss3: Update to 1.8.2....* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.8.2. Ricardo Wurmus
2022-07-02gnu: r-rcpparmadillo: Update to 0.11.2.0.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.0.0. Ricardo Wurmus
2022-07-02gnu: r-dbplyr: Update to 2.2.1....* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.1. Ricardo Wurmus
2022-07-02gnu: r-rlang: Update to 1.0.3....* gnu/packages/statistics.scm (r-rlang): Update to 1.0.3. Ricardo Wurmus
2022-07-02gnu: r-dbi: Update to 1.1.3....* gnu/packages/statistics.scm (r-dbi): Update to 1.1.3. Ricardo Wurmus
2022-07-02gnu: r-nlme: Update to 3.1-158....* gnu/packages/statistics.scm (r-nlme): Update to 3.1-158. Ricardo Wurmus
2022-07-02gnu: r-spacetime: Update to 1.2-8....* gnu/packages/cran.scm (r-spacetime): Update to 1.2-8. [native-inputs]: Add r-knitr. Ricardo Wurmus
2022-07-02gnu: r-pkgdown: Update to 2.0.5....* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.5. Ricardo Wurmus
2022-07-02gnu: r-downlit: Update to 0.4.1....* gnu/packages/cran.scm (r-downlit): Update to 0.4.1. [propagated-inputs]: Add r-withr. Ricardo Wurmus
2022-07-02gnu: r-clustree: Update to 0.5.0....* gnu/packages/cran.scm (r-clustree): Update to 0.5.0. Ricardo Wurmus
2022-07-02gnu: r-phangorn: Update to 2.9.0....* gnu/packages/cran.scm (r-phangorn): Update to 2.9.0. [propagated-inputs]: Add r-generics. Ricardo Wurmus
2022-07-02gnu: r-parsnip: Update to 1.0.0....* gnu/packages/cran.scm (r-parsnip): Update to 1.0.0. [propagated-inputs]: Add r-pillar. Ricardo Wurmus
2022-07-02gnu: r-tidyposterior: Update to 1.0.0....* gnu/packages/cran.scm (r-tidyposterior): Update to 1.0.0. Ricardo Wurmus
2022-07-02gnu: r-dials: Update to 1.0.0....* gnu/packages/cran.scm (r-dials): Update to 1.0.0. [propagated-inputs]: Add r-pillar. Ricardo Wurmus
2022-07-02gnu: r-rsample: Update to 1.0.0....* gnu/packages/cran.scm (r-rsample): Update to 1.0.0. [propagated-inputs]: Remove r-lifecycle; add r-glue and r-pillar. Ricardo Wurmus
2022-07-02gnu: r-lobstr: Update to 1.1.2....* gnu/packages/cran.scm (r-lobstr): Update to 1.1.2. [propagated-inputs]: Remove r-rcpp; add r-cpp11 and r-prettyunits. Ricardo Wurmus
2022-07-02gnu: r-igraph: Update to 1.3.2....* gnu/packages/cran.scm (r-igraph): Update to 1.3.2. Ricardo Wurmus
2022-07-02gnu: r-flexsurv: Update to 2.2....* gnu/packages/cran.scm (r-flexsurv): Update to 2.2. [propagated-inputs]: Add r-ggplot2 and r-statmod. Ricardo Wurmus
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