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2019-01-29gnu: icecat: Update to 60.5.0-guix1 [security-fixes]....Includes fixes for CVE-2018-18500, CVE-2018-18501, and CVE-2018-18505. * gnu/packages/gnuzilla.scm (icecat): Update to 60.5.0-guix1. [version]: Use %icecat-version. [source]: Inherit from 'icecat-source'. Remove obsolete patches. * gnu/packages/patches/icecat-avoid-bundled-libraries.patch, gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch, gnu/packages/patches/icecat-use-system-media-libs.patch: Adapt to 60.5.0. Mark H Weaver
2019-01-29gnu: icecat: Add icecat-source....* gnu/packages/gnuzilla.scm (computed-origin-method): New variable. (%icecat-version, icecat-source): New variables. * gnu/packages/patches/icecat-makeicecat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Mark H Weaver
2019-01-29gnu: clang-runtime@3.5: Fix compilation on glibc 2.28....Reported by zimoun <zimon.toutoune@gmail.com>. * gnu/packages/llvm.scm (clang-runtime-3.5): Add "clang-3.5-libsanitizer-ustat-fix.patch". Ludovic Courtès
2019-01-29gnu: guile-commonmark: Update to 0.1.2....* gnu/packages/guile-xyz.scm (guile-commonmark): Update to 0.1.2. [source](modules, snippet): Remove. Ludovic Courtès
2019-01-29gnu: guile-git: Update to 0.2.0....* gnu/packages/guile.scm (guile-git): Update to 0.2.0. Ludovic Courtès
2019-01-29gnu: Mutt: Update to 1.11.2....* gnu/packages/mail.scm (mutt): Update to 1.11.2. Leo Famulari
2019-01-29gnu: Add texlive-latex-beamer....* gnu/packages/tex.scm (texlive-latex-beamer): New variable. Ricardo Wurmus
2019-01-29gnu: texlive-latex-seminar: Copy files to output....* gnu/packages/tex.scm (texlive-latex-seminar)[build-system]: Use trivial-build-system. [arguments]: Copy files to output. Ricardo Wurmus
2019-01-29gnu: clojure: Update to 1.10.0....* gnu/packages/clojure.scm (clojure): Update to 1.10.0. [source]: Use 'git-fetch'. Mathieu Lirzin
2019-01-29gnu: kitty: Update to 0.13.3....* gnu/packages/terminals.scm (kitty): Update to 0.13.3. [inputs]: Replace python2-pygments with python-pygments. Add wayland. [arguments]: Add 'hard-code-libegl phase. Rutger Helling
2019-01-29gnu: x265: Update to 3.0....* gnu/packages/video.scm (x265): Update to 3.0. [source]: Remove patch. * gnu/packages/patches/x265-detect512-all-arches.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2019-01-28gnu: guix: Update to 4bddd12....* gnu/packages/package-management.scm (guix): Update to 4bddd12. Ludovic Courtès
2019-01-28gnu: Add missing file....* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/installer/newt/user.scm. Ricardo Wurmus
2019-01-28gnu: Add openjdk 11....* gnu/packages/java.scm (openjdk11): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Gábor Boskovits
2019-01-28gnu: fish: Use fish-foreign-env to source /etc/profile....* gnu/packages/shells.scm (fish): Use fish-foreign-env to source /etc/profile when user logs in. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Meiyo Peng
2019-01-28gnu: Add fish-foreign-env....* gnu/packages/shells.scm (fish-foreign-env): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Meiyo Peng
2019-01-28gnu: fish: Update to 3.0.0....* gnu/packages/shells.scm (fish): Update to 3.0.0. [source]: Remove dead URL. [inputs]: Remove bc. Replace python-wrapper with python. [arguments]: Remove configure-flags. Enable fish to source /etc/fish/config.fish. Enable completions, functions and configurations in user's and system's guix profiles. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Meiyo Peng
2019-01-28gnu: youtube-dl: Update to 2019.01.27....* gnu/packages/video.scm (youtube-dl): Update to 2019.01.27. Ludovic Courtès
2019-01-28gnu: fastcap: Fix build and use INVOKE....* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive-tiny with a texlive-union including texlive-fonts-amsfonts. [arguments]: Use INVOKE in build phases. Ricardo Wurmus
2019-01-28gnu: scons: Update to 3.0.3....Fixes <https://bugs.gnu.org/34236>. * gnu/packages/python-xyz.scm (scons): Update to 3.0.3. [arguments]: Add "bootstrap" phase. Ricardo Wurmus
2019-01-28gnu: r-genomicfeatures: Update to 1.34.2....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.2. Ricardo Wurmus
2019-01-28gnu: r-variantannotation: Update to 1.28.10....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.10. Ricardo Wurmus
2019-01-28gnu: r-rmpfr: Update to 0.7-2....* gnu/packages/cran.scm (r-rmpfr): Update to 0.7-2. Ricardo Wurmus
2019-01-28gnu: r-waveslim: Update to 1.7.5.1....* gnu/packages/cran.scm (r-waveslim): Update to 1.7.5.1. Ricardo Wurmus
2019-01-28gnu: r-activity: Update to 1.2....* gnu/packages/cran.scm (r-activity): Update to 1.2. [propagated-inputs]: Remove r-overlap. Ricardo Wurmus
2019-01-28gnu: r-emmeans: Update to 1.3.2....* gnu/packages/cran.scm (r-emmeans): Update to 1.3.2. Ricardo Wurmus
2019-01-28gnu: r-th-data: Update to 1.0-10....* gnu/packages/cran.scm (r-th-data): Update to 1.0-10. Ricardo Wurmus
2019-01-28gnu: r-acceptancesampling: Update to 1.0-6....* gnu/packages/cran.scm (r-acceptancesampling): Update to 1.0-6. Ricardo Wurmus
2019-01-28gnu: r-vioplot: Update to 0.3.0....* gnu/packages/cran.scm (r-vioplot): Update to 0.3.0. [propagated-inputs]: Add r-zoo. Ricardo Wurmus
2019-01-28gnu: r-jomo: Update to 2.6-6....* gnu/packages/cran.scm (r-jomo): Update to 2.6-6. Ricardo Wurmus
2019-01-28gnu: r-fitdistrplus: Update to 1.0-14....* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-14. Ricardo Wurmus
2019-01-28gnu: r-colorspace: Update to 1.4-0....* gnu/packages/cran.scm (r-colorspace): Update to 1.4-0. Ricardo Wurmus
2019-01-28gnu: r-ggmap: Update to 2.6.2....* gnu/packages/cran.scm (r-ggmap): Update to 2.6.2. Ricardo Wurmus
2019-01-28gnu: r-ranger: Update to 0.11.1....* gnu/packages/statistics.scm (r-ranger): Update to 0.11.1. Ricardo Wurmus
2019-01-28gnu: r-prabclus: Update to 2.2-7....* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7. Ricardo Wurmus
2019-01-28gnu: r-gplots: Update to 3.0.1.1....* gnu/packages/statistics.scm (r-gplots): Update to 3.0.1.1. Ricardo Wurmus
2019-01-28gnu: r-hmisc: Update to 4.2-0....* gnu/packages/statistics.scm (r-hmisc): Update to 4.2-0. Ricardo Wurmus
2019-01-28gnu: r-purrr: Update to 0.3.0....* gnu/packages/statistics.scm (r-purrr): Update to 0.3.0. [propagated-inputs]: Remove r-tibble. Ricardo Wurmus
2019-01-28gnu: r-e1071: Update to 1.7-0.1....* gnu/packages/statistics.scm (r-e1071): Update to 1.7-0.1. Ricardo Wurmus
2019-01-28gnu: r-rcpparmadillo: Update to 0.9.200.7.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.7.0. Ricardo Wurmus
2019-01-28gnu: r-openssl: Update to 1.2.1....* gnu/packages/statistics.scm (r-openssl): Update to 1.2.1. [native-inputs]: Add pkg-config. [propagated-inputs]: Add r-askpass. Ricardo Wurmus
2019-01-28gnu: r-checkmate: Update to 1.9.1....* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.1. Ricardo Wurmus
2019-01-28gnu: r-data-table: Update to 1.12.0....* gnu/packages/statistics.scm (r-data-table): Update to 1.12.0. Ricardo Wurmus
2019-01-28gnu: r-qtl: Update to 1.44-9....* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.44-9. Ricardo Wurmus
2019-01-28gnu: r-optparse: Update to 1.6.1....* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.6.1. Ricardo Wurmus
2019-01-28gnu: Add r-askpass....* gnu/packages/cran.scm (r-askpass): New variable. Ricardo Wurmus
2019-01-28gnu: Add r-sys....* gnu/packages/cran.scm (r-sys): New variable. Ricardo Wurmus
2019-01-28packages: 'package-input-rewriting' can take a promise....* guix/packages.scm (package-input-rewriting): Allow REPLACEMENTS to be a promise. * gnu/packages/guile.scm (package-for-guile-2.0): Delay the first argument to 'package-input-rewriting'. Ludovic Courtès
2019-01-28gnu: Remove now unused 'package-for-guile-2.2' procedure....* gnu/packages/guile.scm (package-for-guile-2.2): Remove. Ludovic Courtès
2019-01-28gnu: mumi: Update to 0.0.0-3.ea5a738....* gnu/packages/mail.scm (mumi): Update to 0.0.0-3.ea5a738. Ricardo Wurmus
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