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2017-09-01gnu: r-distillery: Update to 1.0-4....* gnu/packages/cran.scm (r-distillery): Update to 1.0-4. Ricardo Wurmus
2017-09-01gnu: r-sp: Update to 1.2-5....* gnu/packages/cran.scm (r-sp): Update to 1.2-5. Ricardo Wurmus
2017-09-01gnu: r-ggally: Update to 1.3.2....* gnu/packages/cran.scm (r-ggally): Update to 1.3.2. Ricardo Wurmus
2017-09-01gnu: r-reshape: Update to 0.8.7....* gnu/packages/cran.scm (r-reshape): Update to 0.8.7. Ricardo Wurmus
2017-09-01gnu: r-powerlaw: Update to 0.70.1....* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1. Ricardo Wurmus
2017-09-01gnu: r-circlize: Update to 0.4.1....* gnu/packages/cran.scm (r-circlize): Update to 0.4.1. Ricardo Wurmus
2017-09-01gnu: r-shape: Update to 1.4.3....* gnu/packages/cran.scm (r-shape): Update to 1.4.3. Ricardo Wurmus
2017-09-01gnu: r-tclust: Update to 1.3-1....* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1. Ricardo Wurmus
2017-09-01gnu: r-fastcluster: Update to 1.1.24....* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24. Ricardo Wurmus
2017-09-01gnu: r-rcpparmadillo: Update to 0.7.960.1.2....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2. Ricardo Wurmus
2017-09-01gnu: r-plotrix: Update to 3.6-6....* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6. Ricardo Wurmus
2017-09-01gnu: r-httr: Update to 1.3.1....* gnu/packages/statistics.scm (r-httr): Update to 1.3.1. [propagated-inputs]: Remove r-digest and r-stringr. Ricardo Wurmus
2017-09-01gnu: r-commonmark: Update to 1.4....* gnu/packages/statistics.scm (r-commonmark): Update to 1.4. Ricardo Wurmus
2017-09-01gnu: r-ade4: Update to 1.7-8....* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8. Ricardo Wurmus
2017-09-01gnu: r-tibble: Update to 1.3.4....* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4. Ricardo Wurmus
2017-09-01gnu: r-rlang: Update to 0.1.2....* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2. Ricardo Wurmus
2017-09-01gnu: r-knitr: Update to 1.17....* gnu/packages/statistics.scm (r-knitr): Update to 1.17. Ricardo Wurmus
2017-09-01gnu: r-bh: Update to 1.65.0-1....* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1. Ricardo Wurmus
2017-09-01gnu: r-scales: Update to 0.5.0....* gnu/packages/statistics.scm (r-scales): Update to 0.5.0. [propagated-inputs]: Add r-r6 and r-viridislite. Ricardo Wurmus
2017-09-01gnu: r-mgcv: Update to 1.8-19....* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19. Ricardo Wurmus
2017-09-01gnu: r-matrix: Update to 1.2-11....* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11. Ricardo Wurmus
2017-09-01gnu: r-servr: Update to 0.7....* gnu/packages/web.scm (r-servr): Update to 0.7. Ricardo Wurmus
2017-09-01gnu: php: Update to 7.1.9....* gnu/packages/php.scm (php): Update to 7.1.9. Julien Lepiller
2017-09-01gnu: java-slf4j-api: Fix tests....* gnu/packages/java.scm (java-slf4j-api)[arguments]: Enable tests Adjust the jar content to prevent a test failure. Julien Lepiller
2017-09-01gnu: djvulibre: Remove timestamps from .svgz files....* gnu/packages/djvu.scm (djvulibre)[arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Z. Ren
2017-09-01gnu: Add emacs-tuareg....* gnu/packages/ocaml.scm (emacs-tuareg): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Oleg Pykhalov
2017-09-01gnu: emacs-ebuild-mode: Update to 1.37....* gnu/packages/emacs.scm (emacs-ebuild-mode): Update to 1.37. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng0
2017-09-01gnu: Add emacs-2048-game....* gnu/packages/emacs.scm (emacs-2048-game): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng0
2017-09-01packages: 'fold-packages' takes an optional 'modules' parameter....Suggested by Christopher Baines <mail@cbaines.net>. * gnu/packages.scm (fold-packages): Add optional 'modules' parameter and honor it. Ludovic Courtès
2017-09-01gnu: r-rcas: Correct license....* gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license. Ricardo Wurmus
2017-09-01gnu: r-rcas: Update to 1.3.3....* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3. Ricardo Wurmus
2017-09-01gnu: mysql: Enable tests on aarch64....* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling the tests on aarch64-linux. Efraim Flashner
2017-09-01gnu: vsearch: Update to 2.4.4....* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4. Ben Woodcroft
2017-09-01gnu: metabat: Update to 2.12.1....* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1. [source]: Remove it. Use url-fetch. Ben Woodcroft
2017-09-01gnu: netcdf: Fix reproducibility issue; remove unneeded references....* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded 'Configured On' date; truncate reference to compiler store item. Thomas Danckaert
2017-09-01gnu: hdf4: Avoid unneeded store references to compilers....* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to truncate hashes of compiler store items. Thomas Danckaert
2017-09-01gnu: hdf5: Avoid unneeded store references to compilers....* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch "libhdf5.settings", removing references to the C/C++/Fortran compilers. Thomas Danckaert
2017-09-01gnu: hdf5: Add output for fortran interface....* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran. [outputs]: Add "fortran". [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran output to the runpath of the Fortran libs; add a 'split phase to move all Fortran-related files to the the Fortran output store location. Thomas Danckaert
2017-09-01gnu: python2-larch: Enable tests....* gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python2-larch)[source]: Use it. [arguments]: Move 'check' phase to before 'build' phase. Arun Isaac
2017-09-01gnu: python2-ttystatus: Enable tests....* gnu/packages/python.scm (python2-ttystatus)[arguments]: Replace 'check' phase with custom function. Arun Isaac
2017-09-01gnu: python2-cliapp: Enable tests....* gnu/packages/python.scm (python2-cliapp)[arguments]: Replace 'check' phase with custom function. Arun Isaac
2017-09-01gnu: linux-libre: Update to 4.12.10....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.10. (%linux-libre-hash): Update hash. Mark H Weaver
2017-09-01gnu: linux-libre@4.9: Update to 4.9.46....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.46. Mark H Weaver
2017-09-01gnu: linux-libre@4.4: Update to 4.4.85....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.85. Mark H Weaver
2017-08-31gnu: libxml2/fixed: Use patches from inherited package....This is a followup to 76fed2b3c4e3703d1ad81c4330edd94d551b6334. * gnu/packages/xml.scm (libxml2/fixed)(patches): Inherit patches from LIBXML2. Marius Bakke
2017-09-01gnu: graphicsmagick: Fix CVE-2017-{13775,13776,13777}....* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patches. * gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch, gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. Efraim Flashner
2017-09-01gnu: efl: Update to 1.20.3....* gnu/packages/enlightenment.scm (efl): Update to 1.20.3. Efraim Flashner
2017-08-31gnu: Fix current-guix....Without this change, I get errors like: ERROR: In procedure string-drop: ERROR: Value out of range 0 to 35: 51 * gnu/packages/package-management.scm (current-guix): Pass exactly the same path to git-predicate and local-file, to ensure that the select? function is compatible. Christopher Baines
2017-08-31gnu: sddm: Update to 0.15.0....* gnu/packages/display-managers.scm (sddm): Update to 0.15.0. [source]: Update tarball name. [inputs]: Add ELOGIND. [arguments]: Adjust #:configure-flags for elogind support. Add phase to patch hard-coded loginctl reference. Marius Bakke
2017-08-31gnu: libxml2: Fix CVE-2017-{0663,7375,7376,9047,9048,9049,9050}....* gnu/packages/patches/libxml2-CVE-2017-0663.patch, gnu/packages/patches/libxml2-CVE-2017-7375.patch, gnu/packages/patches/libxml2-CVE-2017-7376.patch, gnu/packages/patches/libxml2-CVE-2017-9047+CVE-2017-9048.patch, gnu/packages/patches/libxml2-CVE-2017-9049+CVE-2017-9050.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xml.scm (libxml2)[replacement]: New field. (libxml2/fixed): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Alex Vong
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