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2024-01-10gnu: Add r-escape....* gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc nafkhamdc
2024-01-10gnu: Add python-telomerecat....* gnu/packages/bioinformatics.scm (python-telomerecat): New variable. Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c Ricardo Wurmus
2024-01-10gnu: Add python-parabam....* gnu/packages/bioinformatics.scm (python-parabam): New variable. Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b Ricardo Wurmus
2024-01-10gnu: icedtea: Fix time bomb in ‘GenerateCurrencyData.java’....Fixes <https://issues.guix.gnu.org/68333>. * gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’ parameter and honor it. [native-inputs]: Add patch for “jdk-drop”. (icedtea-8): Likewise. * gnu/packages/patches/jdk-currency-time-bomb.patch, gnu/packages/patches/jdk-currency-time-bomb2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8 Ludovic Courtès
2024-01-10gnu: mesa: Fix cross-compilation....* gnu/packages/gl.scm(mesa)[arguments]<#:phases>: When cross-compiling, force the use of the cmake method to find llvm. Change-Id: I27f6f4d9d71028c15588eeade48d3a918c042b9c Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Zheng Junjie
2024-01-10gnu: yaml-cpp: Update to 0.8.0....* gnu/packages/serialization.scm (yaml-cpp): Update to 0.8.0. Change-Id: I927111f2d103dbb30ff336b64dd4ab90c22312a0 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Zheng Junjie
2024-01-10gnu: Add cl-stripe....* gnu/packages/lisp-xyz.scm (sbcl-stripe): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: Ideeff671b8577bcfceb241a86624ac26f1d077f7 Andre A. Gomes
2024-01-10gnu: nyxt: Update to 3.11.0....* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Andre A. Gomes
2024-01-10gnu: cl-prompter: Update to 0.1.1-0.7890ed5....* gnu/packages/lisp-xyz.scm (sbcl-prompter): Update to 0.1.1-0.7890ed5. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: I65a7d23d4a889c1d7c4821e83b8ea3a56701a5c8 Andre A. Gomes
2024-01-09tests: telephony: Fix typo....* gnu/tests/telephony.scm: Fix typo. Series-to: 65371@debbugs.gnu.org Series-postfix: telephony-team Series-version: 2 Change-Id: I3eb048b8cdd1335c45ffb61b08425a18a2e7a4b2 Maxim Cournoyer
2024-01-09tests: telephony: Fix VPATH builds....* gnu/tests/telephony.scm (%jami-account-content-sexp): New variable. Compute its value with `read` instead of using `include`. * gnu/tests/data/jami-dummy-account.dat (%jami-account-content-sexp): Remove variable. Make the file contain just the S-expression. Change-Id: I8d37aaf7b739f5f39715bfb8a9b8c9536385fd09 Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Wojtek Kosior
2024-01-09gnu: jami-docs: Update to 0.0.0-2.a48997d....* gnu/packages/jami.scm (jami-docs): Update to 0.0.0-2.a48997d. Change-Id: I0c6ee456dec6251a66d1566c855069f3ecf2e44e Maxim Cournoyer
2024-01-09gnu: jami: Update to 20231222.2....* gnu/packages/jami.scm (%jami-version): Rename to... (%jami-nightly-version): ... this. Update to 20231222.2. (%jami-daemon-commit): New variable. (%jami-sources): Delete variable. (libjami) Adjust source to use %jami-nightly-version, %jami-daemon-commit. [source]: Fetch from git. Apply libjami-ac-config-files.patch. [arguments] <make-flags>: Skip ut_media_player test. <phases>: Add extend-scheduler-test-timeout and extend-scheduler-test-timeout phases. [inputs]: Replace dbus-c++ with sdbus-c++. Add dhtnet. Replace libgit2 with libgit2-1.6. (jami): Set version to %jami-nightly-version. [source]: Fetch from git. Apply new jami-qml-tests-discovery.patch, jami-skip-tests-requiring-internet.patch and jami-unbundle-dependencies.patch patches. [arguments] <configure-flags>: Add -DWITH_DAEMON_SUBMODULE=OFF. <phases>: Delete change-directory/maybe. Adjust check phase. Add fake-x11-environment, copy-3rdparty-source-dependencies and disable-problematic-tests phases. [inputs]: Add md4c and tidy-html. * gnu/packages/patches/jami-qml-tests-discovery.patch: New file. * gnu/packages/patches/libjami-ac-config-files.patch: Likewise. * gnu/packages/patches/jami-skip-tests-requiring-internet.patch: Likewise. * gnu/packages/patches/jami-unbundle-dependencies.patch: Likewise. * gnu/packages/patches/jami-libjami-headers-search.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/patches/jami-disable-integration-tests.patch: Adjust patch. Series-changes: 2 - Update Jami to latest nightly version (20231222.2) Change-Id: If30f1178bdfa29c4ea3e54dbb7997e360788adae Maxim Cournoyer
2024-01-09gnu: Add sortfilterproxymodel....* gnu/packages/jami.scm (sortfilterproxymodel): New variable. Change-Id: I7c46fce26d5fcdc98e8646e65dd119155a8b9287 Maxim Cournoyer
2024-01-09gnu: ffmpeg-jami: Relocate to (gnu packages video)....To avoid Guile module dependency cycles, inherited packages must be defined in the same module. Use this opportunity to simplify the patches applying mechanism, versioning custom patches the same as for other packages. * gnu/packages/patches/ffmpeg-jami-change-RTCP-ratio.patch: New file. * gnu/packages/patches/ffmpeg-jami-rtp_ext_abs_send_time.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusdec-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-reload-packet-loss-at-encode.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-remove-mjpeg-log.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-screen-sharing-x11-fix.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/jami.scm (jami-apply-custom-patches): Delete procedure. (%ffmpeg-default-configure-flags): Delete variable. (ffmpeg-compose-configure-flags): Delete procedure. (ffmpeg-jami): Move to... * gnu/packages/video.scm (ffmpeg-jami): ... here. Apply patches to origin and repatriate configure flags. Change-Id: Id374fae18240cd76b224915d80b61422635ccb77 Maxim Cournoyer
2024-01-09gnu: ffmpeg-jami: Update configure flags....* gnu/packages/jami.scm (%ffmpeg-default-configure-flags): Add new flags. Change-Id: I1bac70e7b0ec58c46348a7138f7260b40cdf79f8 Maxim Cournoyer
2024-01-09gnu: pjproject-jami: Update and relocate....* gnu/packages/jami.scm (pjproject-jami): Move to... * gnu/packages/telephony.scm (pjproject-jami): ... here. Update to latest commit. [arguments]: Use same configure flags as done in Jami/DhtNet projects. Change-Id: I638364ebc94f17762ee072311b5fe439b7c6f837 Maxim Cournoyer
2024-01-09gnu: Add dhtnet....* gnu/packages/networking.scm (dhtnet): New variable. Change-Id: I91cc3541f476c8614be35b1ae7cb1740690f685a Maxim Cournoyer
2024-01-09gnu: opendht: Update to 3.1.7....* gnu/packages/networking.scm (opendht): Update to 3.1.7. [arguments]: Add a new relax-test-timeouts phase. Change-Id: Ida7fe021599e9c469e49f6540a908e80b7264241 Maxim Cournoyer
2024-01-09gnu: msgpack: Deprecate with msgpack-c....* gnu/packages/serialization.scm (msgpack-c): New variable. (msgpack-cxx): New variable. (msgpack): Rename to... (msgpack-3): ... this, and inherit from msgpack-c. * gnu/packages/vim.scm (eovim) [arguments]: Add help-cmake-find-msgpack-c phase. [inputs]: Replace msgpack with msgpack-c. * gnu/packages/terminals.scm (tmate) [inputs]: Replace msgpack with msgpack-3. * gnu/packages/networking.scm (opendht) [propagated-inputs]: Replace msgpack with msgpack-cxx. * gnu/packages/chemistry.scm (mmtf-cpp) [propagated-inputs]: Likewise. Maxim Cournoyer
2024-01-09gnu: libnatpmp: Update to 20230423-0.6a850fd....* gnu/packages/networking.scm (libnatpmp): Update to 20230423-0.6a850fd. [source]: Fetch from git. [build-system]: Use cmake-build-system. [arguments]: Add patch-build-system and fix-version phases. Reinstate configure and check phase, but set #:tests? to #f. New #:configure-flags argument. [native-inputs]: Add which. Maxim Cournoyer
2024-01-09gnu: restinio: Update to 0.7.1....* gnu/packages/networking.scm (restinio): Update to 0.7.1. [arguments] <configure-flags>: Remove RESTINIO_FIND_DEPS, RESTINIO_USE_EXTERNAL_HTTP_PARSER and RESTINIO_USE_EXTERNAL_SOBJECTIZER configure flags. Add -DRESTINIO_DEP_LLHTTP=system, -DRESTINIO_DEP_FMT=system, -DRESTINIO_DEP_EXPECTED_LITE=system and -DRESTINIO_WITH_SOBJECTIZER=OFF. <phases>: Add use-system-catch2. [native-inputs]: Remove clara. Replace catch2 with catch2-3. [propagated-inputs]: Replace http-parser with llhttp. (restinio-0.6): New variable. (opendht) [propagated-inputs]: Replace restinio with restinio-0.6. Change-Id: Id69fde5e2c476d7e44b8dd6e065c489314707c31 Maxim Cournoyer
2024-01-09gnu: Add xdiff....* gnu/packages/version-control.scm (xdiff): New variable. Maxim Cournoyer
2024-01-09gnu: Add llhttp....* gnu/packages/web.scm (llhttp): New variable. Change-Id: I3c0475ff6d86a16f51d8870577808ce97ee66a92 Maxim Cournoyer
2024-01-09gnu: Add expected-lite....* gnu/packages/cpp.scm (expected-lite): New variable. Change-Id: I5a21dd631e1f2a3c97b920efcdca69f2537b42da Maxim Cournoyer
2024-01-09gnu: catch2-3: Update to 3.5.1....* gnu/packages/check.scm (catch2-3.3): Rename to... (catch2-3): ... this. Update to 3.5.1. * gnu/packages/logging.scm (spdlog) [native-inputs]: Rename catch2-3.3 to catch2-3. * gnu/packages/potassco.scm (clingo) [inputs]: Likewise. Change-Id: Ied7724597ff4c6371dc4fedc10452ae870d23933 Maxim Cournoyer
2024-01-09gnu: asio: Update to 1.28.0....* gnu/packages/networking.scm (asio): Update to 1.28.0. Change-Id: I517fb9c6c52c5b5e5c41c5760c06eca6750d3765 Maxim Cournoyer
2024-01-09gnu: libnatpmp: Update home page....* gnu/packages/networking.scm (libnatpmp) [home-page]: Update. Maxim Cournoyer
2024-01-09gnu: libnatpmp: Use gexps and simplify....* gnu/packages/networking.scm (libnatpmp) [arguments]: Use gexps. Use gexp variables and cc-for-target in make flags. Maxim Cournoyer
2024-01-09gnu: emacs-repology: Update to 1.2.4....* gnu/packages/emacs-xyz.scm (emacs-repology): Update to 1.2.4. Change-Id: I72b0801ba732a4f34a2891f04d3d1b62674a1bd3 Nicolas Goaziou
2024-01-09gnu: linux-libre 4.14: Update to 4.14.335....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.335. (linux-libre-4.14-pristine-source, deblob-scripts-4.14): Update hashes. Change-Id: I071427a52f188d599f28703374f5b7c42314777c Signed-off-by: Leo Famulari <leo@famulari.name> Wilko Meyer
2024-01-09gnu: linux-libre 4.19: Update to 4.19.304....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.304. (linux-libre-4.19-pristine-source, deblob-scripts-4.19): Update hashes. Change-Id: I14f228aa3b4a57417d7f8c392dc647709f599fac Signed-off-by: Leo Famulari <leo@famulari.name> Wilko Meyer
2024-01-09gnu: linux-libre 5.4: Update to 5.4.266....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.266. (linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes. Change-Id: Ia1578dc94d3172735e5765ee90c46f865412810a Signed-off-by: Leo Famulari <leo@famulari.name> Wilko Meyer
2024-01-09gnu: Add python-ripser....* gnu/packages/machine-learning.scm (python-ripser): New variable. Change-Id: I21b42e555a5017e68cf43a6eaa19d991db36723d Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Troy Figiel
2024-01-09gnu: Add python-persim....* gnu/packages/machine-learning.scm (python-persim): New variable. Change-Id: I914071a90b4555d7d1218ce83337d49298effb01 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Troy Figiel
2024-01-09gnu: Add python-hopcroftkarp....* gnu/packages/machine-learning.scm (python-hopcroftkarp): New variable. Change-Id: I444f0371526d7a69d31363c228d5f7818bcf60dd Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Troy Figiel
2024-01-09gnu: Add python-multimethod....* gnu/packages/python-xyz.scm (python-multimethod): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Troy Figiel
2024-01-09gnu: Add python-pyreadstat....* gnu/packages/patches/python-pyreadstat-link-libiconv.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/statistics.scm (python-pyreadstat): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Change-Id: I361df91487412e4bfd26fb728a6999752e6343e5 Troy Figiel
2024-01-09gnu: python-h5py: Reformat with guix style....* gnu/packages/python-xyz.scm (python-h5py): Reformat with guix style. Change-Id: I9c8fabcb8a438909ff70a2c98c9e01b3a82079f3 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Troy Figiel
2024-01-09gnu: python-h5py: Enable tests....* gnu/packages/python-xyz.scm (python-h5py)[native-inputs]: Add python-ipython and python-pytest. Change-Id: Ia1cae8bce802805c9d9b38a3bf515423f9b719b4 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Troy Figiel
2024-01-09gnu: Add python-portend....* gnu/packages/python-web.scm (python-portend): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Troy Figiel
2024-01-09gnu: Add python-jaraco-collections....* gnu/packages/python-xyz.scm (python-jaraco-collections): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Troy Figiel
2024-01-09gnu: Add python-jaraco-text....* gnu/packages/python-xyz.scm (python-jaraco-text): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Troy Figiel
2024-01-09gnu: Add python-zc-lockfile....* gnu/packages/python-web.scm (python-zc-lockfile): New variable. Troy Figiel
2024-01-09gnu: Add python-pytest-dotenv....* gnu/packages/check.scm (python-pytest-dotenv): New variable. Troy Figiel
2024-01-09gnu: Add python-python-snappy....* gnu/packages/python-compression.scm (python-python-snappy): New variable. Troy Figiel
2024-01-09gnu: Add python-hdf5storage....* gnu/packages/python-xyz.scm (python-hdf5storage): New variable. Change-Id: If54c5f4b634658854bbe9312dce194643fe23733 Troy Figiel
2024-01-09gnu: glew: Fix cross-compiling....* gnu/packages/gl.scm (mesa)[native-inputs]: When cross-compiling, add cmake-minimal-cross. [arguments]: Adjust 'fix-cross-compiling to find llvm. * gnu/packages/llvm.scm (llvm-for-mesa) [arguments]<#:configure-flags>: When cross-compiling, set -DBUILD_SHARED_LIBS:BOOL=TRUE and -DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE, remove -DLLVM_LINK_LLVM_DYLIB.*. <#:phases>: When cross-compiling, remove the 'delete-static-libraries phase. Change-Id: If10dec7695e62604e080230e10f2b8d7167f660b Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Zheng Junjie
2024-01-09gnu: linux-libre 5.10: Update to 5.10.206....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.206. (linux-libre-5.10-pristine-source, deblob-scripts-5.10): Update hashes. Signed-off-by: Leo Famulari <leo@famulari.name> Change-Id: Id7c119c07c08308150354ffc593ec9bd9c13fa46 Wilko Meyer
2024-01-09gnu: linux-libre 5.15: Update to 5.15.146....* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.146. (linux-libre-5.15-pristine-source, deblob-scripts-5.15): Update hashes. Signed-off-by: Leo Famulari <leo@famulari.name> Change-Id: Idb7ede0fc8d4bca3edcd267e6d215dfb98ff5c94 Wilko Meyer