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2020-12-09gnu: r-diffbind: Update to 3.0.7.Roel Janssen
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.7. [propagated-inputs]: Add r-apeglm, r-ashr, and r-greylistchip; remove r-edger.
2020-12-09gnu: Add r-greylistchip.Roel Janssen
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
2020-12-09gnu: Add r-ashr.Roel Janssen
* gnu/packages/cran.scm (r-ashr): New variable.
2020-12-09gnu: Add r-mixsqp.Roel Janssen
* gnu/packages/cran.scm (r-mixsqp): New variable.
2020-12-09gnu: Add r-etrunct.Roel Janssen
* gnu/packages/cran.scm (r-etrunct): New variable.
2020-12-09gnu: Add r-invgamma.Roel Janssen
* gnu/packages/cran.scm (r-invgamma): New variable.
2020-12-09gnu: Add r-apeglm.Roel Janssen
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
2020-12-09gnu: Add r-rcppnumerical.Roel Janssen
* gnu/packages/bioconductor.scm (r-rcppnumerical): New variable.
2020-12-09gnu: r-qvalue: Update to 2.22.0.zimoun
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.22.0.
2020-12-09gnu: r-oligo: Update to 1.54.0.zimoun
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.54.0.
2020-12-09gnu: r-oligoclasses: Update to 1.52.0.zimoun
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.52.0.
2020-12-09gnu: r-geneplotter: Update to 1.68.0.zimoun
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.68.0.
2020-12-09gnu: r-reportingtools: Update to 2.30.0.zimoun
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.0.
2020-12-09gnu: r-regioner: Update to 1.22.0.zimoun
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.22.0.
2020-12-09gnu: r-hpar: Update to 1.32.1.zimoun
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.32.1.
2020-12-09gnu: r-annotate: Update to 1.68.0.zimoun
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.68.0. [propagated-inputs]: Remove 'r-rcurl', add 'r-httr'.
2020-12-09gnu: r-affxparser: Update to 1.62.0.zimoun
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.62.0.
2020-12-09gnu: r-affycoretools: Update to 1.62.0.zimoun
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.62.0.
2020-12-09gnu: r-affycontam: Update to 1.48.0.zimoun
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.48.0.
2020-12-09gnu: r-affycompatible: Update to 1.50.0.zimoun
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.50.0.
2020-12-09gnu: r-affycomp: Update to 1.66.0.zimoun
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.66.0.
2020-12-09gnu: r-biocgenerics: Update to 0.36.0.zimoun
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.0.
2020-12-09gnu: r-biocversion: Update to 3.12.0.zimoun
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.12.0.
2020-12-09gnu: r-cummerbund: Update to 2.32.0.zimoun
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.32.0.
2020-12-09gnu: r-coverageview: Update to 1.28.0.zimoun
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.28.0.
2020-12-09gnu: r-ideoviz: Update to 1.26.0.zimoun
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.26.0.
2020-12-09services: science.scm: Add missing copyright headers.Efraim Flashner
This module was always supposed to have the GPL3 header in place. Follow-up to 8f19e63f760fe02f9969225da2f3f3c36801218f. * gnu/services/science.scm: Add Copyright headers.
2020-12-09gnu: monero-gui: Update to 0.17.1.6.Guillaume Le Vaillant
* gnu/packages/finance.scm (monero-gui): Update to 0.17.1.6.
2020-12-09gnu: monero: Update to 0.17.1.6.Guillaume Le Vaillant
* gnu/packages/finance.scm (monero): Update to 0.17.1.6.
2020-12-09gnu: Add lemonbar-xft.elaexuotee@wilsonb.com
* gnu/packages/wm.scm (lemonbar-xft): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-09gnu: Add go-github-com-aws-sdk.Ryan Prior
* gnu/packages/golang.scm (go-github-com-aws-sdk): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09gnu: Add go-github-com-jmespath-go-jmespath.Ryan Prior
* gnu/packages/golang.scm (go-github-com-jmespath-go-jmespath): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09gnu: Add go-github-com-go-sql-driver-mysql.Ryan Prior
* gnu/packages/golang.scm (go-github-com-go-sql-driver-mysql): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-09gnu: linux-libre 4.14: Update to 4.14.211.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.211. (linux-libre-4.14-pristine-source): Update hash.
2020-12-09gnu: linux-libre 4.19: Update to 4.19.162.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.162. (linux-libre-4.19-pristine-source): Update hash.
2020-12-09gnu: linux-libre 5.4: Update to 5.4.82.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.82. (linux-libre-5.4-pristine-source): Update hash.
2020-12-09gnu: linux-libre: Update to 5.9.13.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.9-version): Update to 5.9.13. (linux-libre-5.9-pristine-source): Update hash.
2020-12-08gnu: OpenSSL: Update to 1.1.1i [fixes CVE-2020-1971].Leo Famulari
* gnu/packages/tls.scm (openssl)[replacement]: Update replacement to 1.1.1i (openssl-1.1.1g): Replace with ... (openssl-1.1.1i): ... new variable.
2020-12-08gnu: guix: Update to 799f066.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to 799f066.
2020-12-08gnu: autotools: Add version 2.70.Ludovic Courtès
* gnu/packages/autotools.scm (autoconf): Rename to... (autoconf-2.69): ... this. (autoconf): Define as an alias for AUTOCONF-2.69. (autoconf-2.70): New variable.
2020-12-08gnu: ocaml-menhir: Update to 20200211.Vincent Legoll
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20200211. [build-system]: Switch from gnu to dune. [arguments]: Remove phases and make-flags. [native-inputs]: Remove field. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08gnu: mruby: Update to 2.1.2.Efraim Flashner
* gnu/packages/ruby.scm (mruby): Update to 2.1.2.
2020-12-08gnu: Add mypaint.L p R n d n
* gnu/packages/image.scm (mypaint): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-08gnu: libmypaint: Update to 1.6.1.Christopher Baines
Needed by mypaint@2.0.1. * gnu/packages/gimp.scm (libmypaint): Update to 1.6.1.
2020-12-08gnu: isync: Use OpenSSL 1.1.Leo Famulari
* gnu/packages/mail.scm (isync)[inputs]: Replace openssl-1.0 with openssl.
2020-12-08gnu: fcitx5-material-color-theme: Add source file-name.Efraim Flashner
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme)[source]: Add file-name field.
2020-12-08gnu: Add fcitx5-material-color-theme.Zhu Zihao
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08gnu: Add fcitx5-configtool.Zhu Zihao
* gnu/packages/fcitx5.scm (fcitx5-configtool): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08gnu: Add fcitx5-chinese-addons.Zhu Zihao
* gnu/packages/fcitx5.scm (fcitx5-chinese-addons): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-08gnu: Add fcitx5-gtk.Zhu Zihao
* gnu/packages/fcitx5.scm (fcitx5-gtk): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
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