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2020-12-09gnu: Add kiwix-desktop....* gnu/packages/web.scm (kiwix-desktop): New variable. Pierre Neidhardt
2020-12-09gnu: Add kiwix-lib....* gnu/packages/web.scm (kiwix-lib): New variable. Pierre Neidhardt
2020-12-09gnu: Add libzim....* gnu/packages/web.scm (libzim): New variable. Pierre Neidhardt
2020-12-09gnu: Add emacs-helm-switch-to-repl....* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable. Pierre Neidhardt
2020-12-09gnu: emacs-debbugs: Update to 0.27....* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27. Nicolas Goaziou
2020-12-09gnu: pciutils: Fix compilation error on GNU/Hurd....* gnu/packages/patches/pciutils-hurd-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pciutils.scm (pciutils)[arguments]: Add 'apply-hurd-patch' phase when (hurd-target?) is true. [inputs]: Add "hurd-patch" entry when (hurd-target?) is true. Ludovic Courtès
2020-12-09services: guix-publish: Depend on 'avahi-daemon' when needed....* gnu/services/base.scm (guix-publish-shepherd-service): Add 'user-processes' to 'requirement'. When ADVERTISE? is true, also add 'avahi-daemon'. Ludovic Courtès
2020-12-09services: avahi: Depend on 'user-processes'....* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes' to 'requirement'. Ludovic Courtès
2020-12-09gnu: r-diffbind: Update to 3.0.8....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8. Ricardo Wurmus
2020-12-09gnu: r-rhtslib: Propagate zlib....* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here... [propagated-inputs]: ...to here. (r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5, r-methylkit)[inputs]: Remove zlib. * gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow, r-flowworkspace, r-seqbias)[inputs]: Remove zlib. Ricardo Wurmus
2020-12-09gnu: r-delayedmatrixstats: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1. [propagated-inputs]: Add r-matrixgenerics. Ricardo Wurmus
2020-12-09gnu: r-gqtlstats: Update to 1.21.3....* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3. zimoun
2020-12-09gnu: r-gqtlbase: Update to 1.21.1....Co-authored-by: Ricardo Wurmus <rekado@elephly.net> * gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1. [arguments]: Add phase to patch broken NAMESPACE file. zimoun
2020-12-09gnu: r-bigmelon: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0. zimoun
2020-12-09gnu: r-watermelon: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0. zimoun
2020-12-09gnu: r-yarn: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0. zimoun
2020-12-09gnu: r-quantro: Update to 1.24.0....* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0. zimoun
2020-12-09gnu: r-lumi: Update to 2.42.0....* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0. zimoun
2020-12-09gnu: r-methylumi: Update to 2.36.0....* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0. zimoun
2020-12-09gnu: r-minfi: Update to 1.36.0....* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0. zimoun
2020-12-09gnu: Add r-catalyst....* gnu/packages/bioconductor.scm (r-catalyst): New variable. zimoun
2020-12-09gnu: r-ggcyto: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0. zimoun
2020-12-09gnu: r-scdd: Update to 1.14.0....* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0. zimoun
2020-12-09gnu: r-chipcomp: Update to 1.20.0....* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0. zimoun
2020-12-09gnu: r-pcatools: Update to 2.2.0....* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0. zimoun
2020-12-09gnu: r-biocviews: Update to 1.58.1....* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.1. Co-authored-by: Ricardo Wurmus <reka@elephly.net>. zimoun
2020-12-09gnu: r-scran: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0. [propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges. Co-authored-by: Ricardo Wurmus <reka@elephly.net>. zimoun
2020-12-09gnu: r-scater: Update to 1.18.3....* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3. [propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp. Co-authored-by: Ricardo Wurmus <reka@elephly.net>. zimoun
2020-12-09gnu: Add r-scuttle....* gnu/packages/bioconductor.scm (r-scuttle): New variable. Ricardo Wurmus
2020-12-09gnu: r-delayedmatrixstats: Update to 1.12.0....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>. zimoun
2020-12-09gnu: r-rhdf5: Update to 2.34.0....* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.34.0. [propagated-inputs]: Add r-rhdf5filters. [arguments]: Avoid to have a plain directory on the list of libraries to link. Co-authored-by: Ricardo Wurmus <reka@elephly.net>. zimoun
2020-12-09gnu: Add r-rhdf5filters....* gnu/packages/bioinformatics.scm (r-rhdf5filters): New variable. Ricardo Wurmus
2020-12-09gnu: r-singlecellexperiment: Update to 1.12.0....* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0. zimoun
2020-12-09gnu: r-yapsa: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0. zimoun
2020-12-09gnu: r-biocsingular: Update to 1.6.0....* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0. zimoun
2020-12-09gnu: r-genomicinteractions: Update to 1.24.0....* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0. zimoun
2020-12-09gnu: r-interactionset: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0. zimoun
2020-12-09gnu: r-genomationdata: Update to 1.22.0....* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.22.0. zimoun
2020-12-09gnu: Add r-sparsematrixstats....* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-bluster....* gnu/packages/bioconductor.scm (r-bluster): New variable. Roel Janssen
2020-12-09gnu: r-annaffy: Update to 1.62.0....* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0. Roel Janssen
2020-12-09gnu: r-sushi: Update to 1.28.0....* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.28.0. zimoun
2020-12-09gnu: r-gwascat: Update to 2.22.0....* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.22.0. [propagated-inputs]: Add r-biocfilecache, r-readr, r-snpstats, and r-variantannotation; remove r-biocgenerics, r-ggplot2, r-rsamtools, and r-rtracklayer. zimoun
2020-12-09gnu: r-gviz: Update to 1.34.0....* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.34.0. zimoun
2020-12-09gnu: r-ldblock: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.20.0. zimoun
2020-12-09gnu: r-erma: Update to 1.6.0....* gnu/packages/bioinformatics.scm (r-erma): Update to 1.6.0. zimoun
2020-12-09gnu: r-snpstats: Update to 1.40.0....* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.40.0. zimoun
2020-12-09gnu: r-ggbio: Update to 1.38.0....* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.38.0. zimoun
2020-12-09gnu: r-biovizbase: Update to 1.38.0....* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.38.0. zimoun
2020-12-09gnu: r-organismdbi: Update to 1.32.0....* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.32.0. zimoun
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