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2022-01-11gnu: Add r-transcriptr.•••* gnu/packages/bioconductor.scm (r-transcriptr): New variable. Ricardo Wurmus
2022-01-11gnu: josm: Update to 18360.•••* gnu/packages/geo.scm (josm): Update to 18360. Julien Lepiller
2022-01-11gnu: stringtie: Update to 2.2.0.•••* gnu/packages/bioinformatics.scm (stringtie): Update to 2.2.0. [source]: Simplify snippet. [arguments]: Add make-flags; update build phases. [inputs]: Remove samtools-0.1; add bzip2, htslib-for-stringtie, and libdeflate. [license]: Change to Expat license. Ricardo Wurmus
2022-01-11gnu: Add htslib-for-stringtie.•••* gnu/packages/bioinformatics.scm (htslib-for-stringtie): New variable. * gnu/packages/patches/htslib-for-stringtie.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ricardo Wurmus
2022-01-11gnu: python-yubikey-manager: Update to 4.0.7.•••* gnu/packages/security-token.scm (python-yubikey-manager): Update to 4.0.7. [arguments]: Remove build phase customization; disable tests. [inputs]: Remove yubikey-personalization and libusb. Ricardo Wurmus
2022-01-11gnu: python-fido2: Update to 0.9.3.•••* gnu/packages/security-token.scm (python-fido2): Update to 0.9.3. [source]: Do not use gexp for snippet. [arguments]: Disable tests; remove trailing #T from build phase. Ricardo Wurmus
2022-01-11gnu: Add gpaste.•••* gnu/packages/gnome-xyz.scm (gpaste): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Attila Lendvai
2022-01-11gnu: Add python-pystitcher.•••* gnu/packages/python-xyz.scm (python-pystitcher): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Greg Hogan
2022-01-11gnu: Add python-pypdf3.•••* gnu/packages/python-xyz.scm (python-pypdf3): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Greg Hogan
2022-01-11gnu: python-validators: Update to 0.18.2.•••* gnu/packages/python-xyz.scm (python-validators): Update to 0.18.2. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Greg Hogan
2022-01-11gnu: dealii: Update to 9.3.2.•••* gnu/packages/maths.scm (dealii): Update to 9.3.2. [source]: Add dealii-fix-compiliation-with-boost-1.78.patch and dealii-fix-sundials.patch. [inputs]: Use simplified format. [native-inputs]: Use simplified format. * gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch: New file. * gnu/packages/patches/dealii-fix-sundials.patch: New file. * gnu/local.mk: Add new patch files. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Felix Gruber
2022-01-11gnu: reuse: Update to 0.14.0.•••* gnu/packages/license.scm (reuse): Update to 0.14.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Felix Gruber
2022-01-11gnu: Add emacs-org-transclusion.•••* gnu/packages/emacs-xyz.scm (emacs-org-transclusion): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego
2022-01-11gnu: notmuch: Simplify inputs.•••* gnu/packages/mail.scm (notmuch)[native-inputs]: Remove labels. Nicolas Goaziou
2022-01-11gnu: notmuch: Update to 0.34.3.•••* gnu/packages/mail.scm (notmuch): Update to 0.34.3. Nicolas Goaziou
2022-01-11gnu: emacs-keycast: Update to 1.1.2.•••* gnu/packages/emacs-xyz.scm (emacs-keycast): Update to 1.1.2. Nicolas Goaziou
2022-01-11gnu: emacs-org-fragtog: Update to 0.4.1.•••* gnu/packages/emacs-xyz.scm (emacs-org-fragtog): Update to 0.4.1. Nicolas Goaziou
2022-01-11gnu: emacs-posframe: Update to 1.1.6.•••* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.1.6. Nicolas Goaziou
2022-01-11gnu: guix-build-coordinator: Update to 0-47.048c609.•••* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-47.048c609. Christopher Baines
2022-01-11services: laminar: Set LAMINAR_BIND_RPC environment variable.•••Earlier, the bind-rpc field of <laminar-configuration> was not used at all. This was a bug. * gnu/services/ci.scm (laminar-shepherd-service): Use bind-rpc to set LAMINAR_BIND_RPC environment variable. Arun Isaac
2022-01-11gnu: handbrake: Update to 1.5.1.•••* gnu/packages/video.scm (handbrake): Update to 1.5.1. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego
2022-01-11gnu: hydrogen: Update to 1.1.1.•••* gnu/packages/music.scm (hydrogen): Update to 1.1.1. Signed-off-by: Leo Famulari <leo@famulari.name> Michael Rohleder
2022-01-11gnu: strawberry: Update to 1.0.1.•••* gnu/packages/music.scm (strawberry): Update to 1.0.1. Signed-off-by: Leo Famulari <leo@famulari.name> Michael Rohleder
2022-01-09gnu: kcov: Edit description.•••* gnu/packages/code.scm (kcov)[description]: Remove operating systems. Edit slightly. Tobias Geerinckx-Rice
2022-01-09gnu: kcov: Update to 40.•••* gnu/packages/code.scm (kcov): Update to 40. Tobias Geerinckx-Rice
2022-01-09gnu: chez-scheme: Update to 9.5.6.•••* gnu/packages/chez.scm (chez-scheme): Update to 9.5.6. [source]: Remove patch. [arguments]: Don't explicitly return #t from phases. * gnu/packages/patches/chez-scheme-build-util-paths-backport.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2022-01-09gnu: astroid: Remove input labels.•••* gnu/packages/mail.scm (astroid)[inputs]: Remove input labels. Tobias Geerinckx-Rice
2022-01-09gnu: astroid: Fix build.•••* gnu/packages/mail.scm (astroid)[inputs]: Substitute webkitgtk-with-libsoup2 for webkitgtk. Tobias Geerinckx-Rice
2022-01-09gnu: libsoup-minimal: Update to 3.0.4.•••* gnu/packages/gnome.scm (libsoup-minimal): Update to 3.0.4. Tobias Geerinckx-Rice
2022-01-09gnu: ii: Update to 1.9.•••* gnu/packages/irc.scm (ii): Update to 1.9. Tobias Geerinckx-Rice
2022-01-09gnu: eg25-manager: Update to 0.4.2.•••* gnu/packages/firmware.scm (eg25-manager): Update to 0.4.2. Tobias Geerinckx-Rice
2022-01-09gnu: diffoscope: Update to 199.•••* gnu/packages/diffoscope.scm (diffoscope): Update to 199. Tobias Geerinckx-Rice
2022-01-10gnu: Go 1.17: Update to 1.17.6.•••* gnu/packages/golang.scm (go-1.17): Update to 1.17.6. Leo Famulari
2022-01-10gnu: Go 1.16: Update to 1.16.13.•••* gnu/packages/golang.scm (go-1.16): Update to 1.16.13. Leo Famulari
2022-01-10gnu: ungoogled-chromium: Convert arguments to G-expression.•••* gnu/packages/chromium.scm (ungoogled-chromium)[native-inputs]: Remove the "master-preferences" gexp input. Remove all labels. [arguments]: Convert to gexp. Inline the above-mentioned gexp. Remove one usage of "gcc" label while at it. Marius Bakke
2022-01-10gnu: ungoogled-chromium: Remove obsolete compiler flags.•••* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Don't set CFLAGS and CXXFLAGS, as the build system already does the right thing. Marius Bakke
2022-01-10gnu: ungoogled-chromium: Remove obsolete substitution.•••* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Remove substitution. Marius Bakke
2022-01-10gnu: ungoogled-chromium: Remove input labels.•••* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Remove labels. [arguments]: Use SEARCH-INPUT-FILE & co as appropriate. Marius Bakke
2022-01-10gnu: i2c-tools: Fix cross-compilation.•••* gnu/packages/linux.scm (i2c-tools)[arguments]: Use #$output to fix cross-compilation. Mathieu Othacehe
2022-01-10gnu: Add xfel.•••* gnu/packages/admin.scm (xfel): New variable. Danny Milosavljevic
2022-01-10gnu: julia-simd: Update to 3.4.0.•••* gnu/packages/julia-xyz.scm (julia-simd): Update to 3.4.0. Efraim Flashner
2022-01-10gnu: Add julia-bioalignments.•••* gnu/packages/julia-xyz.scm (julia-bioalignments): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-intervaltrees.•••* gnu/packages/julia-xyz.scm (julia-intervaltrees): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-biosequences.•••* gnu/packages/julia-xyz.scm (julia-biosequences): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-biosymbols.•••* gnu/packages/julia-xyz.scm (julia-biosymbols): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-yaml.•••* gnu/packages/julia-xyz.scm (julia-yaml): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-stringencodings.•••* gnu/packages/julia-xyz.scm (julia-stringencodings): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-automa.•••* gnu/packages/julia-xyz.scm (julia-automa): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-scanbyte.•••* gnu/packages/julia-xyz.scm (julia-scanbyte): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-simd.•••* gnu/packages/julia-xyz.scm (julia-simd): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun