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2016-12-30gnu: libpng: Mention CVE-2016-10087.•••* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ... * gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust. * gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch. Leo Famulari
2016-12-30gnu: linux-libre@4.1: Update to 4.1.37.•••* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.37. Mark H Weaver
2016-12-30gnu: multiqc: Update to 0.9.•••Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>. * gnu/packages/bioinformatics.scm (multiqc): Update to 0.9. [origin]: Add patch. * gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2016-12-29gnu: elogind: Enable ACL support.•••* gnu/packages/freedesktop.scm (elogind) [inputs]: Add acl. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Chris Marusich
2016-12-29services: Add libmtp's udev rules to '%desktop-services'.•••Suggested by Chris Marusich <cmmarusich@gmail.com>. * gnu/services/desktop.scm (%desktop-services): Add 'mtp' service via call to 'simple-service'. Ludovic Courtès
2016-12-29gnu: mpd: Install systemd service files.•••* gnu/packages/mpd.scm (mpd)[arguments]: Add 'install-service-files' phase. Leo Famulari
2016-12-29gnu: r-genomicfeatures: Update to 1.26.2.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2. Ricardo Wurmus
2016-12-29gnu: r-biostrings: Update to 2.42.1.•••* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1. Ricardo Wurmus
2016-12-29gnu: r-limma: Update to 3.30.7.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7. Ricardo Wurmus
2016-12-29gnu: r-variantannotation: Update to 1.20.2.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2. Ricardo Wurmus
2016-12-29gnu: r-edger: Update to 3.16.5.•••* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5. Ricardo Wurmus
2016-12-29gnu: r-genomeinfodb: Update to 1.10.1.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1. Ricardo Wurmus
2016-12-29gnu: r-iranges: Update to 2.8.1.•••* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1. Ricardo Wurmus
2016-12-29gnu: r-s4vectors: Update to 0.12.1.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1. Ricardo Wurmus
2016-12-29gnu: r-biocstyle: Update to 2.2.1.•••* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1. Ricardo Wurmus
2016-12-29gnu: r-deseq2: Update to 1.14.1.•••* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1. Ricardo Wurmus
2016-12-29gnu: r-annotate: Update to 1.52.1.•••* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1. [propagated-inputs]: Add r-rcurl. Ricardo Wurmus
2016-12-29gnu: khard: Update to 0.11.3.•••* gnu/packages/mail.scm (khard): Update to 0.11.3. [arguments]: Build with python instead of python-2. Remove 'disable-egg-compression' phase. [propagated-inputs]: Don't use python-2 variants of propagated-inputs. Leo Famulari
2016-12-29gnu: r-rsqlite: Update to 1.1-1.•••* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1. [propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp. Ricardo Wurmus
2016-12-29gnu: Add r-plogr.•••* gnu/packages/statistics.scm (r-plogr): New variable. Ricardo Wurmus
2016-12-29gnu: r-hmisc: Update to 4.0-1.•••* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1. [propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and r-rpart; add r-base64. Ricardo Wurmus
2016-12-29gnu: Add r-base64.•••* gnu/packages/statistics.scm (r-base64): New variable. Ricardo Wurmus
2016-12-29gnu: r-rmarkdown: Update to 1.3.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3. [propagated-inputs]: Remove r-tibble; add r-rprojroot. Ricardo Wurmus
2016-12-29gnu: Add r-rprojroot.•••* gnu/packages/statistics.scm (r-rprojroot): New variable. Ricardo Wurmus
2016-12-29gnu: r-rcpparmadillo: Update to 0.7.600.1.0.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.600.1. Ricardo Wurmus
2016-12-29gnu: armadillo: Update to 7.600.2.•••* gnu/packages/maths.scm (armadillo): Update to 7.600.2. Ricardo Wurmus
2016-12-29gnu: r-zoo: Update to 1.7-14.•••* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14. [propagated-inputs]: Remove r-lattice. Ricardo Wurmus
2016-12-29gnu: r-fastcluster: Update to 1.1.22.•••* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22. Ricardo Wurmus
2016-12-29gnu: r-plotly: Update to 4.5.6.•••* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6. Ricardo Wurmus
2016-12-29gnu: r-r-rsp: Update to 0.40.0.•••* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0. Ricardo Wurmus
2016-12-29gnu: r-r-utils: Update to 2.5.0.•••* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0. Ricardo Wurmus
2016-12-29gnu: r-coda: Update to 0.19-1.•••* gnu/packages/statistics.scm (r-coda): Update to 0.19-1. [propagated-inputs]: Remove r-lattice. Ricardo Wurmus
2016-12-29gnu: r-chron: Update to 2.3-48.•••* gnu/packages/statistics.scm (r-chron): Update to 2.3-48. Ricardo Wurmus
2016-12-29gnu: r-knitr: Update to 1.15.1.•••* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1. [propagated-inputs]: Remove r-formatr. Ricardo Wurmus
2016-12-29gnu: r-bh: Update to 1.62.0-1.•••* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1. Ricardo Wurmus
2016-12-29gnu: r-svglite: Update to 1.2.0.•••* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0. Ricardo Wurmus
2016-12-29gnu: r-gdtools: Update to 0.1.3.•••* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3. Ricardo Wurmus
2016-12-29gnu: r-ggplot2: Update to 2.2.0.•••* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0. [propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and r-tibble. Ricardo Wurmus
2016-12-29gnu: r-scales: Update to 0.4.1.•••* gnu/packages/statistics.scm (r-scales): Update to 0.4.1. Ricardo Wurmus
2016-12-29gnu: r-mgcv: Update to 1.8-16.•••* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16. Ricardo Wurmus
2016-12-29gnu: r-qtl: Update to 1.40-8.•••* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8. Ricardo Wurmus
2016-12-29gnu: r-hms: Update to 0.3.•••* gnu/packages/statistics.scm (r-hms): Update to 0.3. Ricardo Wurmus
2016-12-29gnu: r-git2r: Update to 0.17.0.•••* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0. Ricardo Wurmus
2016-12-29gnu: r-ade4: Update to 1.7-5•••* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5. Ricardo Wurmus
2016-12-29gnu: r-xml: Update to 3.98-1.5.•••* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5. [propagated-inputs]: Remove r-rcurl. Ricardo Wurmus
2016-12-29gnu: r-sparsem: Update to 1.74.•••* gnu/packages/statistics.scm (r-sparsem): Update to 1.74. Ricardo Wurmus
2016-12-29gnu: r-data-table: Update to 1.10.0.•••* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0. [propagated-inputs]: Remove r-chron. Ricardo Wurmus
2016-12-29gnu: r-estimability: Update to 1.2.•••* gnu/packages/statistics.scm (r-estimability): Update to 1.2. Ricardo Wurmus
2016-12-29gnu: r-rcpp: Update to 0.12.8.•••* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8. Ricardo Wurmus
2016-12-29gnu: r-yaml: Update to 2.1.14.•••* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14. Ricardo Wurmus
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