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2016-06-06gnu: glibc-hurd-headers: Use correct "--host"....* gnu/packages/base.scm (glibc/hurd-headers)[arguments]: Use "i586-pc-gnu" instead of "i686-pc-gnu". Manolis Ragkousis
2016-06-06gnu: glibc-hurd: Update to 20160518....* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 20160518. [propagated-inputs]: Use hurd-core-headers. [native-inputs]: Remove libpthread's source and "patch/libpthread-patch". [arguments]: Add augment-libc.so and pre-configure-set-pwd phases. Remove prepare-libpthread phase. Stop removing "--with-headers=" from original-configure-flags. * gnu/packages/patches/glibc-hurd-extern-inline.patch: Remove patch. * gnu/packages/patches/libpthread-glibc-preparation.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Remove them. Manolis Ragkousis
2016-05-23gnu: pcre: Remove now-unneeded replacement....* gnu/packages/pcre.scm (pcre)[replacement]: Remove. (pcre-fixed): Remove. Ludovic Courtès
2016-05-23Merge branch 'master' into core-updatesLudovic Courtès
2016-05-22gnu: gnu-pw-mgr: Update to 2.0....* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0. Efraim Flashner
2016-05-22gnu: imagemagick: Update to 6.9.4-4....* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4. Leo Famulari
2016-05-22gnu: Add python2-rope....* gnu/packages/python.scm (python2-rope): New variable. Lukas Gradl
2016-05-21gnu: Add gnome-calendar....* gnu/packages/gnome.scm (gnome-calendar): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kei Yamashita
2016-05-21gnu: Add envstore....* gnu/package/shellutils.scm: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Matthew Jordan
2016-05-21gnu: Add sicp....* gnu/packages/scheme.scm (sicp): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Jan Nieuwenhuizen
2016-05-21gnu: Add dia....* gnu/packages/gnome.scm (dia): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Roel Janssen
2016-05-21gnu: openssl: Remove workaround for GCC 4.9.3 (no longer used)....* gnu/packages/tls.scm (openssl)[arguments]: In the 'configure' phase, remove the workaround that passed "-mfpu=vfpv3" on armhf systems. Mark H Weaver
2016-05-20gnu: linux-libre: Update to 4.5.5....* gnu/packages/linux.scm (linux-libre): Update to 4.5.5. Mark H Weaver
2016-05-20gnu: linux-libre-4.4: Update to 4.4.11....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11. Mark H Weaver
2016-05-20gnu: Add default gcc-objc++....* gnu/packages/gcc.scm (gcc-objc++): New variable. Ricardo Wurmus
2016-05-20gnu: Add gcc-objc++-4.9....* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable. Ricardo Wurmus
2016-05-20gnu: Add default gcc-objc....* gnu/packages/gcc.scm (gcc-objc): New variable. Ricardo Wurmus
2016-05-20gnu: Add gcc-objc-4.9....* gnu/packages/gcc.scm (gcc-objc-4.9): New variable. Ricardo Wurmus
2016-05-20gnu: r-rcpparmadillo: Update to 0.6.700.6.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.6. Ricardo Wurmus
2016-05-20gnu: armadillo: Update to 6.700.7....* gnu/packages/maths.scm (armadillo): Update to 6.700.7. Ricardo Wurmus
2016-05-20gnu: r-genomation: Update to 1.4.2....* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2. Ricardo Wurmus
2016-05-20gnu: r-jsonlite: Update to 0.9.20....* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20. Ricardo Wurmus
2016-05-20gnu: r-plotly: Update to 3.6.0....* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0. Ricardo Wurmus
2016-05-20gnu: r-matrixstats: Update to 0.50.2....* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2. Ricardo Wurmus
2016-05-20gnu: r-r-rsp: Update to 0.30.0....* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0. Ricardo Wurmus
2016-05-20gnu: r-rmarkdown: Update to 0.9.6....* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6. Ricardo Wurmus
2016-05-20gnu: r-plotrix: Update to 3.6-2....* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2. Ricardo Wurmus
2016-05-20gnu: r-devtools: Update to 1.11.1....* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1. Ricardo Wurmus
2016-05-20gnu: r-git2r: Update to 0.15.0....* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0. Ricardo Wurmus
2016-05-20gnu: r-openssl: Update to 0.9.3....* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3. Ricardo Wurmus
2016-05-20gnu: r-testthat: Update to 1.0.2....* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2. Ricardo Wurmus
2016-05-20gnu: r-knitr: Update to 1.13....* gnu/packages/statistics.scm (r-knitr): Update to 1.13. Ricardo Wurmus
2016-05-20gnu: r-highr: Update to 0.6....* gnu/packages/statistics.scm (r-highr): Update to 0.6. Ricardo Wurmus
2016-05-20gnu: r-formatr: Update to 1.4....* gnu/packages/statistics.scm (r-formatr): Update to 1.4. Ricardo Wurmus
2016-05-20gnu: r-evaluate: Update to 0.9....* gnu/packages/statistics.scm (r-evaluate): Update to 0.9. Ricardo Wurmus
2016-05-20gnu: r-bh: Update to 1.60.0-2....* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2. Ricardo Wurmus
2016-05-20gnu: r-dbi: Update to 0.4-1....* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1. Ricardo Wurmus
2016-05-20gnu: r-rcpp: Update to 0.12.5....* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5. Ricardo Wurmus
2016-05-20gnu: r-genomicfeatures: Update to 1.24.2....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2. Ricardo Wurmus
2016-05-20gnu: r-summarizedexperiment: Update to 1.2.2....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2. Ricardo Wurmus
2016-05-20gnu: r-biocparallel: Update to 1.6.2....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2. Ricardo Wurmus
2016-05-20gnu: r-annotationdbi: Update to 1.34.2....* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2. Ricardo Wurmus
2016-05-20gnu: r-variantannotation: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1. Ricardo Wurmus
2016-05-20gnu: r-genomeinfodb: Update to 1.8.1....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1. Ricardo Wurmus
2016-05-19gnu: btrfs-progs: Update to 4.5.3....* gnu/packages/linux.scm (btrfs-progs): Update to 4.5.3. Leo Famulari
2016-05-19gnu: jemalloc: Update to 4.2.0....* gnu/packages/jemalloc.scm (jemalloc): Update to 4.2.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jelle Licht
2016-05-19gnu: expat: Fix CVE-2016-0718. Improve fix for CVE-2015-1283....* gnu/packages/patches/expat-CVE-2015-1283-refix.patch, gnu/packages/patches/expat-CVE-2016-0718.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xml.scm (expat)[replacement]: New field. (expat/fixed): New variable. [source]: Use new patches. Leo Famulari
2016-05-19gnu: flann: Do not install .a files....* gnu/packages/maths.scm (flann)[arguments]: Add #:phases. Ludovic Courtès
2016-05-19gnu: python: Add 'python' variables for different major/minor versions....* gnu/packages/python.scm (python-2): Rename variable to... (python-2.7): ...this. (python-2): Refer to "python-2.7". (python): Rename variable to... (python-3.4): ...this. (python-3): Refer to "python-3.4". (python): Refer to "python-3". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Hartmut Goebel
2016-05-19gnu: flann: Strip .mex file....* gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories. Ludovic Courtès
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