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2016-10-04gnu: guix: Honor the user's 'GUILE_LOAD_PATH'....* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Use 'prefix' when wrapping 'guix' for 'GUILE_LOAD_PATH'. Ludovic Courtès
2016-10-04mapped-devices: Properly open RAID devices....This fixes a type error introduced in 7f8ad82bf23b032ad6bd85bb1daa87cc83de509c, given that SOURCES is a list. * gnu/system/mapped-devices.scm (open-raid-device): Add 'apply' invocation. Ludovic Courtès
2016-10-04gnu: Add GoAccess....* gnu/packages/web.scm (goaccess): New variable. Ludovic Courtès
2016-10-04gnu: pies: Update to 1.3....* gnu/packages/admin.scm (pies): Update to 1.3. [arguments]: New field. Ludovic Courtès
2016-10-04gnu: global: Update to 6.5.5....* gnu/packages/code.scm (global): Update to 6.5.5. Ludovic Courtès
2016-10-04gnu: gsl: Update to 2.2.1....* gnu/packages/maths.scm (gsl): Update to 2.2.1. Ludovic Courtès
2016-10-04gnu: direvent: Update to 5.1....* gnu/packages/admin.scm (direvent): Update to 5.1. [arguments]: Augment 'patch-/bin/sh' phase to patch 'progman.c' and 'testsuite'. Ludovic Courtès
2016-10-04gnu: gnu-c-manual: Update to 0.2.5....* gnu/packages/gcc.scm (gnu-c-manual): Update to 0.2.5. Ludovic Courtès
2016-10-04gnu: rush: Update to 1.8....* gnu/packages/rush.scm (rush): Update to 1.8. [source]: Remove 'patches'. * gnu/packages/patches/cpio-gets-undeclared.patch, gnu/packages/patches/rush-CVE-2013-6889.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Ludovic Courtès
2016-10-04gnu: cryptsetup: Update to 1.7.2....* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.2. [source]: Use kernel mirror. [home-page]: Update URL. Leo Famulari
2016-10-04gnu: metabat: Update to 0.32.4-1.cbdca756....* gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756. * gnu/packages/patches/metabat-remove-compilation-date.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2016-10-04gnu: fish: Do not use the bundled PCRE2....* gnu/packages/shells.scm (fish)[inputs]: Add PCRE2. Ludovic Courtès
2016-10-04gnu: fish: Add input bc....Fixes <http://bugs.gnu.org/24433>. * gnu/packages/shells.scm (fish)[inputs]: Add bc. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Arun Isaac
2016-10-04gnu: warzone2100: Update to 3.2.1....* gnu/packages/games.scm (warzone2100): Update to 3.2.1. [arguments]: Remove phase "set-sdl-paths", add phase "link-tests-with-qt", add phase "remove-reference-to-missing-file". [inputs]: Replace "qt-4" with "qt", replace "sdl-union" with "sdl2", add "openssl". Ricardo Wurmus
2016-10-04gnu: ruby-nokogumbo: Move "build-gemspec" phase after "unpack"....* gnu/packages/ruby.scm (ruby-nokogumbo)[arguments]: Move "build-gemspec" phase after "unpack". Ricardo Wurmus
2016-10-04gnu: python-pathlib: Disable tests....* gnu/packages/python.scm (python-pathlib)[arguments]: Disable tests. Ricardo Wurmus
2016-10-04gnu: ghmm: Run tests after install....* gnu/packages/machine-learning.scm (ghmm)[arguments]: Move "check" phase after "install"; add phase "fix-PYTHONPATH". Ricardo Wurmus
2016-10-04gnu: raincat: Add missing input....* gnu/packages/games.scm (raincat)[inputs]: Add freeglut. Ricardo Wurmus
2016-10-04gnu: supertux: Update to 0.5.0....* gnu/packages/games.scm (supertux): Update to 0.5.0. [arguments]: Add flag to disable static boost libraries. Ricardo Wurmus
2016-10-03gnu: parallel: Update to 20160922....* gnu/packages/parallel.scm (parallel): Update to 20160922. Leo Famulari
2016-10-03gnu: linux-libre: Update to 4.8....* gnu/packages/linux.scm (linux-libre): Update to 4.8. * gnu/packages/linux-libre-4.7-x86_64.conf, gnu/packages/linux-libre-4.7-i686.conf: Delete files. * gnu/packages/linux-libre-4.8-x86_64.conf, gnu/packages/linux-libre-4.8-i686.conf: New files. * Makefile.am (KCONFIGS): Update accordingly. Mark H Weaver
2016-10-03gnu: nss: Increase build timeout to 60 hours....* gnu/packages/gnuzilla.scm (nss)[properties]: Increase build timeout to 60 hours. Mark H Weaver
2016-10-03gnu: gnunet: Add inputs....* gnu/packages/gnunet.scm (gnunet)[inputs]: Add perl, jansson, nss, gmp, bluez, glib, libogg. [native-inputs]: Move python-2 from here ... [inputs]: ... to here. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2016-10-03gnu: gctp: 'license' field now has a <license> value....* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record. Ludovic Courtès
2016-10-03gnu: libgcrypt@1.7: Replacement now has an accurate 'version' field....* gnu/packages/gnupg.scm (libgcrypt-1.7.3)[version]: New field. Ludovic Courtès
2016-10-03gnu: openssl@1.0: Replacement now has an accurate 'version' field....* gnu/packages/tls.scm (openssl-1.0.2j)[name, version]: New fields. Ludovic Courtès
2016-10-03gnu: libarchive: Fix several security issues....* gnu/packages/backup.scm (libarchive)[replacement]: New field. (libarchive/fixed): New variable. * gnu/packages/patches/libarchive-7zip-heap-overflow.patch, gnu/packages/patches/libarchive-fix-symlink-check.patch, gnu/packages/patches/libarchive-fix-filesystem-attacks.patch, gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Leo Famulari
2016-10-03gnu: perl-dbd-mysql: Update to 4.037 [fixes CVE-2016-1246]....* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.037. Leo Famulari
2016-10-03tests: ssh: Add Dropbear test....* gnu/tests/ssh.scm (run-ssh-test): Try authenticating with 'userauth-none!' when 'userauth-password!' fails. (%test-dropbear): New variable. Ludovic Courtès
2016-10-03tests: ssh: Generalize....* gnu/tests/ssh.scm (%openssh-os): Rename to... (%base-os): ... this. [services]: Remove 'openssh-service-type' instance. (os-with-service): New procedure. (run-openssh-test): Rename to... (run-ssh-test): ... this. Add 'ssh-service' and 'pid-file' parameters. Use 'os-with-service' to add SSH-SERVICE to %BASE-OS. Honor PID-FILE. (%test-openssh): Adjust accordingly. Ludovic Courtès
2016-10-03services: rottlog: Add Rottlog to the global profile....* gnu/services/admin.scm (rottlog-service-type): Extend PROFILE-SERVICE-TYPE. Ludovic Courtès
2016-10-03services: rottlog: Improve default weekly rotations....* gnu/services/admin.scm (%rotated-files): Add "/var/log/maillog". (syslog-rotation-config): Change parameter to 'files'. Return a string-append gexp for all of FILES. (simple-rotation-config): Remove unnecessary 'postrotate' and 'endscript'. (%default-rotations): Adjust accordingly. Ludovic Courtès
2016-10-03tests: Add 'openssh-service-type' test....* gnu/tests/ssh.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ludovic Courtès
2016-10-03services: openssh-service-type: Expose 'openssh-configuration'....* gnu/services/ssh.scm (<openssh-configuration>): Add default values. [pubkey-authentication?]: Rename to... [public-key-authentication?]: ... this. (openssh-service): Remove. * doc/guix.texi (Networking Services): Adjust accordingly. Ludovic Courtès
2016-10-03services: Add rottlog....* gnu/services/admin.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (Log Rotation): New node. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Jan Nieuwenhuizen
2016-10-02gnu: ghc-process: Replace reference to /bin/sh....* gnu/packages/haskell.scm (ghc-process)[arguments]: Add phases "patch-reference-to-/bin/sh" to replace reference to /bin/sh. Ricardo Wurmus
2016-10-02gnu: Do not propagate inputs in haskell.scm....* gnu/packages/haskell.scm (ghc-streaming-commons)[propagated-inputs]: Move ghc-random... [inputs]: ...to here; remove ghc-async, add ghc-directory, add ghc-transformers; move ghc-quickcheck, ghc-hspec... [native-inputs]: ...to here; add hspec-discover. (ghc-test-framework)[propagated-inputs]: Move all from here... [inputs]: ...to here; move ghc-hunit and ghc-quickcheck... [native-inputs]: ...to here. (ghc-attoparsec)[propagated-inputs]: Move ghc-scientific... [inputs]: ...to here; move ghc-quickcheck, ghc-quickcheck-unicode, ghc-test-framework, ghc-test-framework-quickcheck2, ghc-vector... [native-inputs]: ...to here. (ghc-zip-archive)[propagated-inputs]: Move all inputs from here... [inputs]: ...to here; move ghc-hunit from here... [native-inputs]: ...to here. (ghc-network-uri)[inputs]: Add ghc-parsec; move ghc-hunit from here... [native-inputs]: ...to here. [propagated-inputs]: Remove. (ghc-wai)[propagated-inputs]: Move all inputs from here... [inputs]: ...to here; move ghc-quickcheck, ghc-hunit, and ghc-hspec from here... [native-inputs]: ...to here. Add hspec-discover. (ghc-wai-extra)[propagated-inputs]: Remove ghc-hspec and ghc-hunit; move all other inputs from here... [inputs]: ...to here. [native-inputs]: Add hspec-discover, ghc-hspec, and ghc-hunit. (ghc-resourcet, ghc-xss-sanitize, ghc-parsec, ghc-vector, ghc-http, ghc-base-compat, ghc-base-orphans, ghc-word8)[inputs]: Move all inputs from here... [native-inputs]: ...to here. (ghc-haddock-library, ghc-hspec-contrib, ghc-base-compat, ghc-base-orphans, ghc-fast-logger, ghc-word8, ghc-aeson-qq, ghc-logging-facade, ghc-mockery, ghc-yaml, ghc-hslua)[native-inputs]: Add hspec-discover. (ghc-fast-logger)[inputs]: Move ghc-hspec from here... [native-inputs]: ...to here. (ghc-data-default, ghc-data-default-instances-base, ghc-data-default-instances-containers, ghc-data-default-instances-dlist, ghc-haddock-api, ghc-happy, ghc-haskell-src-exts, ghc-resourcet, ghc-xss-sanitize, ghc-sdl-mixer, ghc-sdl-image, ghc-glut, ghc-gluraw, ghc-opengl, cpphs, ghc-old-time, ghc-data-default-instances-old-locale, cabal-install, ghc-x11, ghc-x11-xft, ghc-hashable, ghc-test-framework-hunit, ghc-test-framework, ghc-tf-random, ghc-transformers-base, ghc-unix-time, ghc-http-types, ghc-iproute, ghc-regex-base, ghc-regex-posix, ghc-regex-tdfa-rc, ghc-parsers, ghc-trifecta, ghc-distributive, ghc-comonad, ghc-polyparse, ghc-profunctors, ghc-reducers, ghc-xml, ghc-exceptions, ghc-temporary, ghc-temporary-rc, ghc-smallcheck, ghc-tasty-ant-xml, ghc-quickcheck-instances, ghc-quickcheck, ghc-case-insensitive, ghc-chasingbottoms, ghc-unordererd-containers, ghc-uniplate, ghc-ansi-wl-pprint, ghc-parsec, ghc-vector, ghc-vector-binary-instances, ghc-http, ghc-hspec, ghc-hspec-contrib, ghc-hspec-core, ghc-hspec-meta, ghc-vault, ghc-monad-control, ghc-blaze-builder, ghc-blaze-markup, ghc-blaze-html, ghc-async, ghc-optparse-applicative, ghc-charset, ghc-void, ghc-kan-extensions, ghc-statevar, ghc-lens, ghc-cheapskate, ghc-semigroupoids, ghc-contrvariant, ghc-semigroups, ghc-free, ghc-adjunctions, ghc-fast-logger, ghc-doctest, ghc-lifted-base, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty, ghc-cookie, ghc-scientific, ghc-aeson, ghc-wai-logger, ghc-pandoc-types, ghc-texmath, ghc-regex-pcre-builtin, ghc-highlighting-kate, ghc-cmark, ghc-enclosed-exceptions, ghc-th-lift, ghc-th-expand-syns, ghc-th-reify-many, ghc-th-orphans, ghc-haskell-src-meta, ghc-aeson-qq, ghc-conduit, ghc-mockery, ghc-yaml, ghc-filemanip, ghc-juicypixels, ghc-hslua, ghc-mime-types, ghc-http-client, ghc-hourglass, ghc-pem, ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse, ghc-tasty-kat, ghc-cryptonite, ghc-x509, ghc-x509-store, ghc-x509-validation, ghc-x509-system, ghc-tls, ghc-socks, ghc-connection, ghc-http-client-tls, ghc-pandoc)[propagated-inputs]: Move inputs from here... [inputs]: ...to here. Ricardo Wurmus
2016-10-02gnu: r-plotly: Update to 4.5.2....* gnu/packages/statistics.scm (r-plotly): Update to 4.5.2. [propagated-inputs]: Remove r-plyr; remove r-viridis; add r-dplyr; add r-lazyeval; add r-purrr; add r-tibble; add r-viridislite. Ricardo Wurmus
2016-10-02gnu: Add r-purrr....* gnu/packages/statistics.scm (r-purrr): New variable. Ricardo Wurmus
2016-10-02gnu: Add r-viridislite....* gnu/packages/statistics.scm (r-viridislite): New variable. Ricardo Wurmus
2016-10-02gnu: libotf: Fix source URI....* gnu/packages/fontutils.scm (libotf)[source]: Fix suorce URI. Mark H Weaver
2016-10-02gnu: vsearch: Update to 2.1.2....* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.2. Ben Woodcroft
2016-10-02gnu: ffmpeg: Update to 3.1.4....* gnu/packages/video.scm (ffmpeg): Update to 3.1.4. Efraim Flashner
2016-10-01gnu: linux-libre: Update to 4.7.6....* gnu/packages/linux.scm (linux-libre): Update to 4.7.6. Mark H Weaver
2016-10-01gnu: linux-libre@4.4: Update to 4.4.23....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.23. Mark H Weaver
2016-10-01gnu: guitarix: Update to 0.35.1....* gnu/packages/audio.scm (guitarix): Update to 0.35.1. Ricardo Wurmus
2016-10-01gnu: eigen: Update to 3.2.9....* gnu/packages/algebra.scm (eigen): Update to 3.2.9. Ricardo Wurmus
2016-10-01gnu: julia: Update to 0.5.0....* gnu/packages/julia.scm (libuv-julia): Update to commit 8d5131b6c1595920dd30644cd1435b4f344b46c8. (libunwind-for-julia): New variable. (julia): Update to 0.5.0. [arguments]: Disable stripping of binaries; modify "prepare-deps" phase; add "fix-llvm-flag" phase; add "set-home" phase; adjust "hardcode-soname-map" phase; remove fix for "double-conversion" from "fix-include-and-link-paths" phase; enable "repl" and "replcompletions" tests; disable "backtrace", "compile", "replutil", and "cmdlineargs" tests; remove USE_SYSTEM_RMATH flag; remove USE_SYSTEM_GRISU flag. [inputs]: Replace "llvm-3.5" with "llvm"; replace "libunwind" with "libunwind-for-julia"; remove "double-conversion"; remove "rmath-julia"; update "suitesparse" origin; replace "virtualenv" origin with "python2-virtualenv". [native-inputs]: Add "openssl". Ricardo Wurmus
2016-10-01gnu: utf8proc: Update to 2.0.2....* gnu/packages/textutils.scm (utf8proc): Update to 2.0.2. Ricardo Wurmus
2016-10-01gnu: gd: Fix CVE-2016-7568....* gnu/packages/patches/gd-CVE-2016-7568.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gd.scm (gd)[source]: Use it. Leo Famulari
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