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2016-09-26gnu: vsearch: Update to 2.1.1....* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1. Ben Woodcroft
2016-09-26gnu: azr3: Fix libsigc++ build errors....* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag. [source]: Add patch. * gnu/packages/patches/azr3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ricardo Wurmus
2016-09-26gnu: qtractor: Update to 0.7.9....* gnu/packages/music.scm (qtractor): Update to 0.7.9. Ricardo Wurmus
2016-09-26gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene....* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-grohmm....* gnu/packages/bioinformatics.scm (r-grohmm): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-systempiper....* gnu/packages/bioinformatics.scm (r-systempiper): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-shortread....* gnu/packages/bioinformatics.scm (r-shortread): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-gostats....* gnu/packages/bioinformatics.scm (r-gostats): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-category....* gnu/packages/bioinformatics.scm (r-category): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-gseabase....* gnu/packages/bioinformatics.scm (r-gseabase): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-rbgl....* gnu/packages/bioinformatics.scm (r-rbgl): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-annotationforge....* gnu/packages/bioinformatics.scm (r-annotationforge): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-batchjobs....* gnu/packages/statistics.scm (r-batchjobs): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-fail....* gnu/packages/statistics.scm (r-fail): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-bbmisc....* gnu/packages/statistics.scm (r-bbmisc): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-checkmate....* gnu/packages/statistics.scm (r-checkmate): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-backports....* gnu/packages/statistics.scm (r-backports): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-sendmailr....* gnu/packages/statistics.scm (r-sendmailr): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-pheatmap....* gnu/packages/statistics.scm (r-pheatmap): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-matrix....* gnu/packages/statistics.scm (r-matrix): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-deseq2....* gnu/packages/bioinformatics.scm (r-deseq2): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-genefilter....* gnu/packages/bioinformatics.scm (r-genefilter): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-hmisc....* gnu/packages/statistics.scm (r-hmisc): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-geneplotter....* gnu/packages/bioinformatics.scm (r-geneplotter): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-annotate....* gnu/packages/bioinformatics.scm (r-annotate): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-rpart....* gnu/packages/statistics.scm (r-rpart): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-rjson....* gnu/packages/web.scm (r-rjson): New variable. Ricardo Wurmus
2016-09-26gnu: Add r-hwriter....* gnu/packages/web.scm (r-hwriter): New variable. Ricardo Wurmus
2016-09-26gnu: tcc: Disable build on MIPS....* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on mips64el. Ricardo Wurmus
2016-09-25gnu: Add optipng....* gnu/packages/image.scm (optipng): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org> Arun Isaac
2016-09-26system: Don't emit a GRUB 'search' command when passed a GRUB file name....Reported by Tomáš Čech <tcech@suse.com> at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20067#26>. * gnu/system/grub.scm (grub-root-search): Don't emit anything when FILE is a string that does not denote an absolute file name. Ludovic Courtès
2016-09-25gnu: epiphany: Drop NSS and libwnck....These dependencies were dropped in Epiphany 3.21.x. * gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck". Ricardo Wurmus
2016-09-25gnu: epiphany: Update to 3.22.0....* gnu/packages/gnome.scm (epiphany): Update to 3.22.0. Ricardo Wurmus
2016-09-25gnu: python-virtualenv: Update to 15.0.3....* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3. [arguments]: Disable failing test. Ricardo Wurmus
2016-09-25gnu: linux-libre: Update to 4.7.5....* gnu/packages/linux.scm (linux-libre): Update to 4.7.5. Mark H Weaver
2016-09-25gnu: linux-libre@4.4: Update to 4.4.22....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22. Mark H Weaver
2016-09-25gnu: Add pam-krb5...* gnu/packages/admin.scm (pam-krb5): New variable. John Darrington
2016-09-24gnu: privoxy: Update to 3.0.26....* gnu/packages/tor.scm (privoxy): Update to 3.0.26. [home-page]: Use https. Efraim Flashner
2016-09-24gnu: tor: Update to 0.2.8.8....* gnu/packages/tor.scm (tor): Update to 0.2.8.8. [source]: Update source url. [home-page]: Use https. Efraim Flashner
2016-09-24system: grub.cfg uses correct file names when store is not in root partition....Fixes <http://bugs.gnu.org/24346>. Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama). * guix/scripts/system.scm (previous-grub-entries): Get the initrd file name from PARAMS. * gnu/system.scm (operating-system-grub.cfg): Use 'operating-system-initrd-file' to retrieve the initrd file name. * gnu/system/grub.scm (strip-mount-point): New procedure. (grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for LINUX and INITRD. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Carlos Sánchez de La Lama
2016-09-24system: 'read-boot-parameters' reads the 'initrd' parameter....* gnu/system.scm (<boot-parameters>)[initrd]: New field. (read-boot-parameters): Read the 'initrd' element and fill in the 'initrd' field of the result. Ludovic Courtès
2016-09-24gnu: Add gforth....* gnu/packages/gforth.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: 宋文武 <iyzsong@gmail.com> ng0
2016-09-24gnu: Add gnome-calculator....* gnu/packages/gnome.scm (gnome-calculator): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org> Rene Saavedra
2016-09-23gnu: Add cmark....* gnu/packages/markdown.scm (cmark): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Erik Edrosa
2016-09-23gnu: Add enet....* gnu/packages/networking.scm (enet): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2016-09-23gnu: flashrom: Update to 0.9.9...* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9. [source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch". [aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags. * gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic
2016-09-23gnu: Add nickle....* gnu/packages/nickle.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2016-09-23gnu: orpheus: Use 'modify-phases'....* gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases' syntax. Efraim Flashner
2016-09-23gnu: orpheus: Fix build on mips64el....* gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass "--host=mips64el-unknown-linux-gnu" to ./configure. Efraim Flashner
2016-09-23gnu: giac-xcas: Update to 1.2.2-81....* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81. Signed-off-by: Leo Famulari <leo@famulari.name> Nicolas Goaziou
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