| Age | Commit message (Expand) | Author |
|---|
| 2023-05-12 | gnu: python-orjson: Fix version string of Python module.•••* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Remove invalid
characters from version string.
| Ricardo Wurmus |
| 2023-05-12 | gnu: python-orjson: Reuse phases from pyproject-build-system.•••* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Include modules from
pyproject-build-system; use their 'build and 'install phases instead of
duplicating their contents.
| Ricardo Wurmus |
| 2023-05-12 | gnu: python-canonicaljson: Use pyproject-build-system.•••* gnu/packages/python-xyz.scm (python-canonicaljson)[arguments]: Remove custom
'build, 'check, and 'install phases.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-05-12 | gnu: python-pyproject-metadata: Simplify by using pyproject-build-system.•••* gnu/packages/python-xyz.scm (python-pyproject-metadata)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-05-12 | gnu: python-seaborn: Simplify by using pyproject-build-system.•••* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-05-12 | gnu: shrinkwrap: Use pyproject-build-system.•••* gnu/packages/python-xyz.scm (shrinkwrap)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-05-12 | gnu: jamm: Use G-expression.•••* gnu/packages/bioinformatics.scm (jamm)[arguments]: Use G-expression.
| Ricardo Wurmus |
| 2023-05-12 | gnu: arriba: Use SEARCH-INPUT-FILE and -DIRECTORY.•••* gnu/packages/bioinformatics.scm (arriba)[arguments]:
Use SEARCH-INPUT-DIRECTORY and SEARCH-INPUT-FILE; use G-expression; drop
trailing #T from build phases.
| Ricardo Wurmus |
| 2023-05-12 | gnu: multichoose: Clean up.•••* gnu/packages/bioinformatics.scm (multichoos): Fix indentation.
[arguments]: Use G-expression.
| Ricardo Wurmus |
| 2023-05-12 | gnu: samblaster: Update to 0.1.26.•••* gnu/packages/bioinformatics.scm (samblaster): Update to 0.1.26.
| Ricardo Wurmus |
| 2023-05-12 | gnu: samblaster: Simplify.•••* gnu/packages/bioinformatics.scm (samblaster): Fix indentation.
[arguments]: Use G-expression; drop trailing #T from 'install phase.
[description]: Use double spacing between all sentences.
| Ricardo Wurmus |
| 2023-05-12 | gnu: methyldackel: Update to 0.6.1.•••* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.6.1.
[arguments]: Set LIBBIGWIG variable instead of patching Makefile.
[inputs]: Replace htslib-1.9 with htslib.
| Ricardo Wurmus |
| 2023-05-12 | gnu: methyldackel: Simplify arguments.•••* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Use list, drop
argument list.
[native-inputs]: Drop package label.
| Ricardo Wurmus |
| 2023-05-12 | gnu: phast: Simplify by using G-expression.•••* gnu/packages/bioinformatics.scm (phast)[arguments]: Use G-expression and
drop trailing #T from build phases.
| Ricardo Wurmus |
| 2023-05-12 | gnu: ribotaper: Simplify with G-expression.•••* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Use G-expression and
drop trailing #T from build phase.
| Ricardo Wurmus |
| 2023-05-12 | gnu: sra-tools: Do link with libxml2.•••* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use G-expression for
clarity; drop trailing #T from build phases; modify 'configure phase to
dynamically link with libxml2.
[inputs]: Drop package labels; add libxml2.
| Ricardo Wurmus |
| 2023-05-12 | gnu: ncbi-vdb: Ensure that vdb-sqlite is installed.•••The most important change here is the addition of the 'install-libs phase.
All other changes are just the result of switching to G-expressions.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add 'install-libs
phase; use G-expression; drop trailing #T from build phases.
[inputs]: Drop package labels.
| Ricardo Wurmus |
| 2023-05-12 | gnu: Add python-mgatk.•••* gnu/packages/bioinformatics.scm (python-mgatk): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2023-05-12 | system: default-skeletons: Merge search-paths of multiple profiles.•••Fixes <https://issues.guix.gnu.org/20255>.
* gnu/system/shadow.scm (default-skeletons)[bash_profile, zprofile]:
Merge search-paths from multiple profiles via "guix package".
| 宋文武 |
| 2023-05-12 | gnu: Add Free as in Freedom (2.0).•••* gnu/packages/fsf.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
| 宋文武 |
| 2023-05-12 | gnu: sbcl-serapeum: Update to 20230511.•••* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230511.
| Pierre Neidhardt |
| 2023-05-12 | gnu: python-lightning-cloud: Use older version of fastapi.•••The variant of the fastapi package must match that of
python-pytorch-lightning.
* gnu/packages/machine-learning.scm (python-lightning-cloud)
[propagated-inputs]: Replace python-fastapi with
python-fastapi-for-pytorch-lightning.
| Ricardo Wurmus |
| 2023-05-12 | gnu: Add python-optparse-pretty.•••* gnu/packages/python-xyz.scm (python-optparse-pretty): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add r-dropletutils.•••* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add r-ggpattern.•••* gnu/packages/cran.scm (r-ggpattern): New variable.
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add r-gridpattern.•••* gnu/packages/cran.scm (r-gridpattern): New variable.
| Mădălin Ionel Patrașcu |
| 2023-05-11 | gnu: texlive-datetime2: Add needed propagated-inputs.•••Required packages can be seen with:
$ rg RequirePackage $(guix build texlive-datetime2)
* gnu/packages/tex.scm (texlive-datetime2)[propagated-inputs]: Add
TEXLIVE-ETOOLBOX, TEXLIVE-LATEX-XKEYVAL, and TEXLIVE-TRACKLANG.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Greg Hogan |
| 2023-05-11 | gnu: Add emacs-framemove.•••* gnu/packages/emacs-xyz.scm (emacs-framemove): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Fabio Natali |
| 2023-05-11 | gnu: texlive-ddphonism: Replace deprecated input.•••* gnu/packages/tex.scm (texlive-ddphonism)[propagated-inputs]: Replace
deprecated texlive-latex-tools by texlive-tools.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-totpages: Replace deprecated input.•••* gnu/packages/tex.scm (texlive-totpages)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-totcount: Replace deprecated input.•••* gnu/packages/tex.scm (texlive-totcount)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-ncctools: Replace deprecated input.•••* gnu/packages/tex.scm (texlive-ncctools)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-soulutf8: Replace deprecated inputs.•••* gnu/packages/tex.scm (texlive-soulutf8)[propagated-inputs]: Replace
deprecated texlive-generic-etexcmds by texlive-etexcmds and deprecated
texlive-generic-infwarerr by texlive-infwarerr.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-xetex: Replace deprecated inputs.•••* gnu/packages/tex.scm (texlive-xetex)[propagated-inputs]: Replace deprecated
texlive-generic-atbegshi by texlive-atbegshi and deprecated
texlive-latex-atveryend by texlive-atveryend.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: python-skranger: Install library.•••* gnu/packages/python-xyz.scm (python-skranger)[arguments]: Install the
library that we've just built.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-skranger.•••* gnu/packages/python-xyz.scm (python-skranger): New variable.
| Ricardo Wurmus |
| 2023-05-11 | Revert "gnu: Add python-pytest-enabler."•••This reverts commit 0a8c46e89f095a9ec3632d43920ac3cce49f16d5.
An older version of python-pytest-enabler already exists in (gnu packages
check).
| Ricardo Wurmus |
| 2023-05-11 | gnu: lagrange: Update to 1.15.9.•••* gnu/packages/web-browsers.scm (lagrange): Update to 1.15.9.
| Efraim Flashner |
| 2023-05-11 | gnu: mutt: Update to 2.2.10.•••* gnu/packages/mail.scm (mutt): Update to 2.2.10.
| Efraim Flashner |
| 2023-05-11 | gnu: qiv: Update to 2.3.3.•••* gnu/packages/image-viewers.scm (qiv): Update to 2.3.3.
| Efraim Flashner |
| 2023-05-11 | gnu: git-annex: Update to 10.20230407.•••* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20230407.
| Efraim Flashner |
| 2023-05-11 | gnu: global: Update to 6.6.10.•••* gnu/packages/code.scm (global): Update to 6.6.10.
| Efraim Flashner |
| 2023-05-11 | tests: vnstat: Avoid call to 'getservbyname'.•••This would break "make as-derivation" because /etc/services is
unavailable in the build environment:
[ 38/ 80] loading... 95.0% of 40 filesBacktrace:
In guix/build/compile.scm:
249:8 19 (compile-files "." "/gnu/store/s5nadqd6hkzivkxp33svwqslfn608ng5-guix-system-tests" ("gnu/tests/audio.scm" "gnu/tests/base.scm" "gnu/tests/ci.scm" "gnu/tests/cups.scm" "gnu/tests/d…" …) …)
[…]
In unknown file:
0 (getserv "discard" "tcp")
ERROR: In procedure getserv:
In procedure getserv: no such service discard
builder for `/gnu/store/…-guix-system-tests.drv' failed with exit code 1
* gnu/tests/vnstat.scm (run-vnstat-test): Hard-code 'guest-port' instead
of calling 'getservbyname'.
| Ludovic Courtès |
| 2023-05-11 | gnu: Add python-omnipath.•••* gnu/packages/python-web.scm (python-omnipath): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-inflect.•••* gnu/packages/python-xyz.scm (python-inflect): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-docrep.•••* gnu/packages/python-xyz.scm (python-docrep): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-pytest-enabler.•••* gnu/packages/python-check.scm (python-pytest-enabler): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-adjusttext.•••* gnu/packages/python-xyz.scm (python-adjusttext): New variable.
| Ricardo Wurmus |
| 2023-05-11 | tests: Add vnstat tests.•••* gnu/tests/vnstat.scm: New file.
* gnu/local.mk: Register it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Bruno Victal |
| 2023-05-11 | services: inetd: Export accessors.•••* gnu/services/networking.scm: Export inetd-configuration?,
inetd-configuration-program, inetd-configuration-entries, inetd-entry?,
inetd-entry-node, inetd-entry-name, inetd-entry-socket-type,
inetd-entry-protocol, inetd-entry-wait?, inetd-entry-user, inetd-entry-program
and inetd-entry-arguments.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Bruno Victal |
