| Age | Commit message (Expand) | Author |
|---|
| 2024-01-24 | gnu: range-v3: Update to 0.12.0....* gnu/packages/cpp.scm (range-v3): Update to 0.12.0.
[source]: Remove patch.
* gnu/packages/patches/range-v3-build-with-gcc10.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Change-Id: I078937f9aff0da31ede8d472d8739e48bb775c55
| Efraim Flashner |
| 2024-01-24 | gnu: range-v3: Format with 'guix style'....* gnu/packages/cpp.scm (range-v3): Format with 'guix style'.
Change-Id: I249443e5e5d0f7ef49e33de4f140246a862101d2
| Efraim Flashner |
| 2024-01-24 | gnu: range-v3: Build with newer gcc....* gnu/packages/cpp.scm (range-v3)[native-inputs]: Remove gcc-9.
Change-Id: I0411d5db3e3df15c6df0a9a010d311fe1c80015c
| Efraim Flashner |
| 2024-01-24 | gnu: python-xgboost: Fix build....* gnu/packages/machine-learning.scm (python-xgboost)[build-system]: Use
pyproject-build-system.
[arguments]: Move test flags to #:test-flags; disable a few more tests, mostly
to account for a removed dataset; use G-expression; remove custom 'check phase.
Change-Id: I6841a8c159919df85acaa8558248a8775ec5be80
| Ricardo Wurmus |
| 2024-01-24 | gnu: webkitgtk: Update to 2.42.4 [fixes CVE-2023-42883]....* gnu/packages/webkit.scm (webkitgtk): Update to 2.42.4.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
| Andre A. Gomes |
| 2024-01-24 | gnu: emacs-yasnippet: Update to 0.14.0-0.297546f....* gnu/packages/emacs-xyz.scm (emacs-yasnippet): Update to 0.14.0-0.297546f.
Remove fix-tests patch.
* gnu/packages/patches/emacs-yasnippet-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
Change-Id: I3fda2bb3d879d88f06f9d814b6c8d835d9eafc9f
| Maxim Cournoyer |
| 2024-01-24 | gnu: Add python-pytorch-geometric....* gnu/packages/machine-learning.scm (python-pytorch-geometric): New variable.
Change-Id: I9a016cda7d167159437724a878e6512c37106fea
| Ricardo Wurmus |
| 2024-01-24 | gnu: singular: Update to 4.3.2p10....* gnu/packages/algebra.scm (singular): Update to 4.3.2p10.
Change-Id: I196d31e3f5605dd51385146ce091d63a4e9eb340
| Andreas Enge |
| 2024-01-24 | gnu: Add r-papaja....* gnu/packages/cran.scm (r-papaja): New variable.
Co-authored-by: Lars-Dominik Braun <lars@6xq.net>
Change-Id: Ib5b3a6ff8d52052cf135b2ba36cad3ce295ed6d4
| Ricardo Wurmus |
| 2024-01-24 | gnu: Add r-tinylabels....* gnu/packages/cran.scm (r-tinylabels): New variable.
Change-Id: Ie86de4daaf132cd32f896573be747f35e725258e
| Ricardo Wurmus |
| 2024-01-24 | gnu: Add r-rmdfiltr....* gnu/packages/cran.scm (r-rmdfiltr): New variable.
Change-Id: I59b92e9364ca4e74a98b80b6cca1a883ab3caec3
| Ricardo Wurmus |
| 2024-01-24 | gnu: python-chaospy: Ignore deprecation warnings....* gnu/packages/statistics.scm (python-chaospy)[arguments]: Add phase
'dont-treat-deprecation-warnings-as-error.
Change-Id: Id06404f9e47f7084fefc2e72032882d49e5b546b
| Ricardo Wurmus |
| 2024-01-24 | gnu: pynac: Update to 0.7.29....* gnu/packages/sagemath.scm (pynac): Update to 0.7.29.
Change-Id: I3bf2675aea9d8a07fdcfa08471c9d1ca7725e1f7
| Andreas Enge |
| 2024-01-24 | gnu: python-pyts: Update to 0.13.0....* gnu/packages/python-science.scm (python-pyts): Update to 0.13.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; enable all tests.
[propagated-inputs]: Remove python-matplotlib.
Change-Id: Iafcc047d8bb14e1eef514fd92aa53f8fda38eab0
| Ricardo Wurmus |
| 2024-01-24 | gnu: python-scikit-learn-extra: Update to 0.3.0-1.0f95d8d....* gnu/packages/machine-learning.scm (python-scikit-learn-extra): Update to
0.3.0-1.0f95d8d.
[arguments]: Move test flags out of 'check phase and to #:test-flags.
[propagated-inputs]: Add python-packaging.
Change-Id: I4081a9364a0646d0c6960a3d155315e8eff8af59
| Ricardo Wurmus |
| 2024-01-24 | gnu: nyxt: Update to 3.11.1....* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.1.
[inputs]: Remove sbcl-fset and sbcl-mk-string-metrics. Add gst-libav,
gst-plugins-bad, gst-plugins-base, gst-plugins-good, gst-plugins-ugly.
[arguments]: Update 'configure-tests' phase.
[home-page]: Update URL.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: If35d6f0153339b311057bea05562fefb215c3f0d
| Andre A. Gomes |
| 2024-01-24 | gnu: cl-lass: Update to 0.6.0-1.1f2418d....* gnu/packages/lisp-xyz.scm (sbcl-lass): Update to 0.6.0-1.1f2418d.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: I51dfe84b9194b4d94d76502ffd47f88cbc1583fb
| Andre A. Gomes |
| 2024-01-23 | gnu: python-pydicom: Update to 2.4.4....* gnu/packages/python-science.scm (python-pydicom): Update to 2.4.4.
Change-Id: I996115fb3bdf0bd61d2b2dcdb2500b31ce104597
| Sharlatan Hellseher |
| 2024-01-23 | gnu: python-pydicom: Simplify package style....* gnu/packages/python-science.scm (python-pydicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.
Change-Id: I7ef413ea2da6cbb83eb33424c559f7ac5ed549cb
| Sharlatan Hellseher |
| 2024-01-23 | gnu: python-pynetdicom: Simplify package style....* gnu/package/python-science.scm (python-pynetdicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.
Change-Id: If4e80d06edb0080685d0695f30abc2f9db669f45
| Sharlatan Hellseher |
| 2024-01-23 | gnu: Add python-pynetdicom....* gnu/packages/python-science.scm (python-pynetdicom): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Antero Mejr |
| 2024-01-23 | gnu: Add flash....* gnu/packages/bioinformatics.scm (flash): New variable.
Change-Id: Id657ba7850031ad24b4333b6bc79401511e00a85
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add isolator....* gnu/packages/bioinformatics.scm (isolator): New variable.
Change-Id: I950baca5b6898576f358b3364b1fe541b3333298
| Ricardo Wurmus |
| 2024-01-23 | ci: Don't cross compile to or1k-elf....* gnu/ci.scm (cross-jobs)[pointless?]: Don't build any packages for or1k-elf.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Change-Id: I294429d5318b94fb8e7780a37f3608b5321cf6ca
| Mathieu Othacehe |
| 2024-01-23 | gnu: Add metal....* gnu/packages/bioinformatics.scm (metal): New variable.
Change-Id: I70fd30c18303f61a9f6720e70d4b4e57140a7140
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add randfold....* gnu/packages/bioinformatics.scm (randfold): New variable.
Change-Id: If2cea9c8d5323296015dc21ea7a3d1b677ae2798
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add python-pyfasta....* gnu/packages/bioinformatics.scm (python-pyfasta): New variable.
Change-Id: Ib2ab0a6eb250309633d5be33c18409227bce84ba
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add python-fcsparser....* gnu/packages/bioinformatics.scm (python-fcsparser): New variable.
Change-Id: I87ed7f10bbfdf7d689cb6289a5f5ad31872f9de0
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add lsgkm....* gnu/packages/bioinformatics.scm (lsgkm): New variable.
Change-Id: I0ea35354c7856e7425567cd4ac27ab7fc2ab0d9e
| Ricardo Wurmus |
| 2024-01-23 | gnu: icecat: Update to 115.7.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2024-0741, CVE-2024-0742, CVE-2024-0746,
CVE-2024-0747, CVE-2024-0749, CVE-2024-0750, CVE-2024-0751,
CVE-2024-0753, and CVE-2024-0755.
* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
| Mark H Weaver |
| 2024-01-23 | Revert "gnu: source-highlight: Wrap scripts."...This package causes the rebuild of more than 9000 packages.
This reverts commit 367bc2d198f57bc34522441820f761b61fed0ce0.
| Efraim Flashner |
| 2024-01-23 | gnu: kubo: Update to 0.18.0....* gnu/packages/ipfs.scm (kubo): Update to 0.18.0.
[inputs]: Add go-github-com-gorilla-mux.
Change-Id: I4eccdfcf9eadbdf25728fcca766c5238efb0d57f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Artyom V. Poptsov |
| 2024-01-23 | gnu: source-highlight: Wrap scripts....* gnu/packages/pretty-print.scm (source-highlight)[arguments]: Add a
phase to wrap shell scripts so they can find the source-hightlight
binary.
[inputs]: Add guile-3.0.
Change-Id: Ia8d006d969385210d5c82b4a0dd1f78178306ac2
| Efraim Flashner |
| 2024-01-23 | gnu: trurl: Update to 0.9....* gnu/packages/curl.scm (trurl): Update to 0.9.
Change-Id: Ieb0f19e6d48897dceb32e317613a301f521c9b94
| Sharlatan Hellseher |
| 2024-01-23 | gnu: Add eddylab-squid....* gnu/packages/bioinformatics.scm (eddylab-squid): New variable.
Change-Id: Icb02f42fc95d2001a639e22608a01ef9074158bc
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add python-magic-impute....* gnu/packages/bioinformatics.scm (python-magic-impute): New variable.
Change-Id: Iba5240e9920a1045078c736553cb1d56069963b5
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add python-graphtools....* gnu/packages/graph.scm (python-graphtools): New variable.
Change-Id: If08b1460447702f7ec2e64f013a52a7065076b01
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add python-tasklogger....* gnu/packages/python-xyz.scm (python-tasklogger): New variable.
Change-Id: I53319b70b7788090e8873a912d7c56044c0bb5b2
| Ricardo Wurmus |
| 2024-01-23 | gnu: python-nose2: Update to 0.14.0....* gnu/packages/check.scm (python-nose2): Update to 0.14.0.
[native-inputs]: Remove python-coverage.
[propagated-inputs]: Remove python-six.
Change-Id: I15a30723fe49cca9929524e543d12c9e2f4b02ca
| Ricardo Wurmus |
| 2024-01-23 | gnu: python-scikit-learn: Disable one test....This test fails with the upgrade of scipy.
* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Disable
test_singular_matrix test.
Change-Id: I47627403826bb5c52f4d578399c7cabaa3f8838d
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add python-pygsp....* gnu/packages/graph.scm (python-pygsp): New variable.
Change-Id: I8dd195216617e5cdb4a7453ecbe23cd9ff9e06a3
| Ricardo Wurmus |
| 2024-01-23 | gnu: Add r-scenic....* gnu/packages/bioinformatics.scm (r-scenic): New variable.
Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303
| Ricardo Wurmus |
| 2024-01-23 | gnu: python-scipy: Update to 1.12.0....* gnu/packages/python-science.scm (python-scipy): Update to 1.12.0.
[propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy,
python-numpydoc, python-pydata-sphinx-theme, python-pydevtool,
python-rich-click, python-sphinx, python-threadpoolctl, and
python-typing-extensions; remove python-pyparsing.
[native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov,
and python-pytest-xdist; remove python-threadpoolctl.
Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210
| Ricardo Wurmus |
| 2024-01-23 | gnu: r-desctools: Update to 0.99.53....* gnu/packages/statistics.scm (r-desctools): Update to 0.99.53.
Change-Id: I425b37907b51a93fafa193d217bdf68636f608a7
| Ricardo Wurmus |
| 2024-01-23 | gnu: r-plotly: Update to 4.10.4....* gnu/packages/statistics.scm (r-plotly): Update to 4.10.4.
Change-Id: Idd10685b1ab521056e0468f0c0c188543c11c96a
| Ricardo Wurmus |
| 2024-01-23 | gnu: r-xml: Update to 3.99-0.16.1....* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.16.1.
Change-Id: I2936eac03ec20b091e45b920f946d92028099973
| Ricardo Wurmus |
| 2024-01-23 | gnu: r-rsqlite: Update to 2.3.5....* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.5.
Change-Id: I43e95bc4ff0b0dc36cf9f3de1705d63bc5681286
| Ricardo Wurmus |
| 2024-01-23 | gnu: r-roxygen2: Update to 7.3.1....* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.1.
Change-Id: I5d23ee576beb4dc4dc1e49d13cc38ffef0d33512
| Ricardo Wurmus |
| 2024-01-23 | gnu: r-maldiquant: Update to 1.22.2....* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.2.
Change-Id: Ia483cff36bb3a2cbf4b691bb4832ce98757aabe0
| Ricardo Wurmus |
| 2024-01-23 | gnu: r-modeldata: Update to 1.3.0....* gnu/packages/cran.scm (r-modeldata): Update to 1.3.0.
Change-Id: Ibaef5366948e9ca45325d279a99f14417ca43e8e
| Ricardo Wurmus |
