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2022-10-29gnu: emacs-nano-modeline: Update to 0.7.2....* gnu/packages/emacs-xyz.scm (emacs-nano-modeline): Update to 0.7.2. Nicolas Goaziou
2022-10-29gnu: guix-build-coordinator: Update to 0-68.3768aec....* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-68.3768aec. Christopher Baines
2022-10-29gnu: bzip2: Fix script interpreters when cross-compiling....Add bash-minimal as an input fixes the interpreters for various scripts (like bzdiff and bzgrep) when cross-compiling. * gnu/packages/compression.scm (bzip2)[inputs]: Add bash-minimal when cross compiling. Christopher Baines
2022-10-29gnu: xz: Fix script interpreters when cross-compiling....Add bash-minimal as an input fixes the interpreters for various scripts (like xzgrep and xzless) when cross-compiling. * gnu/packages/compression.scm (xz)[inputs]: Add bash-minimal when cross compiling. Christopher Baines
2022-10-29gnu: gzip: Fix script interpreters when cross-compiling....Add bash-minimal as an input fixes the interpreters for various scripts (like zcat and zless) when cross-compiling. * gnu/packages/compression.scm (gzip)[inputs]: Add bash-minimal when cross compiling. Christopher Baines
2022-10-29gnu: gnome-control-center: Update to 42.4....* gnu/packages/gnome.scm (gnome-control-center): Update to 42.4. Christopher Baines
2022-10-28gnu: Add seer-gdb....* gnu/packages/debug.scm (seer-gdb): New variable. Danny Milosavljevic
2022-10-28gnu: texlive-latex-atveryend: Fix typo....* gnu/packages/tex.scm (texlive-latex-atveryend)[description]: Fix incorrectly pluralized use of "package". Vagrant Cascadian
2022-10-28gnu: python-rpy2: Update to 3.5.5....* gnu/packages/statistics.scm (python-rpy2): Update to 3.5.5. [arguments]: Run all tests; run them conditionally. Ricardo Wurmus
2022-10-28gnu: sed: Skip failing test on GNU/Hurd....* gnu/packages/base.scm (sed)[arguments]: Add #:make-flags. Christopher Baines
2022-10-28gnu: diffutils: Skip failing test on GNU/Hurd....* gnu/packages/base.scm (diffutils)[arguments]: Add #:make-flags. * gnu/packages/commencement.scm (diffutils-boot0)[arguments]: Adjust to always use substitute-keyword-arguments. Christopher Baines
2022-10-28gnu: Add r-damefinder....* gnu/packages/bioconductor.scm (r-damefinder): New variable. Mădălin Ionel Patrașcu
2022-10-28gnu: Add r-dama....* gnu/packages/bioconductor.scm (r-dama): New variable. Mădălin Ionel Patrașcu
2022-10-28gnu: Add ghc-6.6....* gnu/packages/haskell.scm (ghc-6.6): New variable. Ricardo Wurmus
2022-10-28gnu: ghc-6.0: Adjust configuration....* gnu/packages/haskell.scm (ghc-6.0)[arguments]: Pass --enable-src-tree-happy option; remove --with-hc option because we use the same GHC for everything; add --with-gcc option to embed absolute file name of GCC. [native-inputs]: Remove unused python-2. Ricardo Wurmus
2022-10-28gnu: ghc-4: Embed absolute file name of GCC in GHC....* gnu/packages/haskell.scm (ghc-4)[arguments]: Pass "--with-gcc" option to configure script. Ricardo Wurmus
2022-10-28gnu: flair: Update to 1.6.4....* gnu/packages/bioinformatics.scm (flair): Update to 1.6.4. [propagated-inputs]: Add python-numpy and python-scipy. Ricardo Wurmus
2022-10-28gnu: flair: Set R_HOME....* gnu/packages/bioinformatics.scm (flair)[arguments]: Set R_HOME. Ricardo Wurmus
2022-10-28gnu: flair: Add missing R package....* gnu/packages/bioinformatics.scm (flair)[inputs]: Add r-apeglm. Ricardo Wurmus
2022-10-28gnu: Add r-debcam....* gnu/packages/bioconductor.scm (r-debcam): New variable. Mădălin Ionel Patrașcu
2022-10-28gnu: Add r-dmwr2....* gnu/packages/cran.scm (r-dmwr2): New variable. Mădălin Ionel Patrașcu
2022-10-28gnu: emacs-modus-themes: Update to 3.0.0....* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 3.0.0. Nicolas Goaziou
2022-10-28gnu: emacs-ediprolog: Update to 2.2....* gnu/packages/emacs-xyz.scm (emacs-ediprolog): Update to 2.2. Nicolas Goaziou
2022-10-28gnu: emacs-subed: Update to 1.0.16....* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.0.16. Nicolas Goaziou
2022-10-28gnu: emacs-mmm-mode: Update to 0.5.9....* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Update to 0.5.9. Nicolas Goaziou
2022-10-28gnu: emacs-ement: Update to 0.4.1....* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.4.1. Nicolas Goaziou
2022-10-28gnu: r-mixedpower: Fix faulty commit....Fix previous commit, which did not contain the following changes: * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/statistics.scm (r-mixedpower)[source]: Use it. Lars-Dominik Braun
2022-10-28gnu: icedove: Update to 102.4.1....* gnu/packages/gnuzilla.scm (%icedove-build-id, %icedove-version) Update to 102.4.1. Jonathan Brielmaier
2022-10-28gnu: r-mixedpower: Improve compatibility with R>=4.2....Upstream’s fix is incomplete and thus commit 7871447cf5d9fc5a7b5fe5277fc5e111e5ce32d7 was insufficient. * gnu/packages/patches/r-mixedpower-r2power.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/statistics.scm (r-mixedpower)[source]: Use it. Lars-Dominik Braun
2022-10-27gnu: rottlog: Apply patch adding a Texinfo direntry....Relates to <https://issues.guix.gnu.org/58821>. * gnu/packages/patches/rottlog-direntry.patch: Add patch. * gnu/packages/admin.scm (rottlog): Apply it. * gnu/local.mk (dist_patch_DATA): Register it. Maxim Cournoyer
2022-10-27gnu: rottlog: Use gexps and bootstrap Autotools build system....* gnu/packages/admin.scm (rottlog) [snippet]: Delete build system files. Delete trailing #t. Patch Makefile.am instead of Makefile.in. Do not patch INSTALL_RC and INSTALL_SCRIPT variables default values. [arguments]: Use gexps. Delete trailing #t. [make-flags]: Override INSTALL_RC and INSTALL_SCRIPT. [phases]{fix-configure}: Delete phase. [native-inputs]: Add autoconf. Sort inputs. Maxim Cournoyer
2022-10-27gnu: linux-libre: Update to 5.19.17....* gnu/packages/linux.scm (linux-libre-5.19-version): Update to 5.19.17. (linux-libre-5.19-pristine-source): Update hash. Leo Famulari
2022-10-28gnu: findutils: Skip failing test on GNU/Hurd....* gnu/packages/base.scm (findutils)[arguments]: Add #:make-flags. * gnu/packages/commencement.scm (findutils-boot0)[arguments]: Likewise. Ludovic Courtès
2022-10-28gnu: grep: Skip failing tests on GNU/Hurd....* gnu/packages/base.scm (grep)[arguments]: Add #:make-flags. Ludovic Courtès
2022-10-28gnu: coreutils: Skip failing tests on GNU/Hurd....* gnu/packages/base.scm (coreutils)[arguments]: Add "tests/df/unreadable.sh" and "test-perror2" to the 'XFAIL_TESTS' list. Ludovic Courtès
2022-10-27gnu: swftools: Fix typos....* gnu/packages/animation.scm (swftools)[description]: Avoid uses of "allows to". Vagrant Cascadian
2022-10-27gnu: pypy: Remove unused module imports....This is a follow-up to commit 6e7ed040339d815c3a3f72706b75bd0162969c9d. * gnu/packages/pypy.scm: Remove unused modules. Marius Bakke
2022-10-27build-system/pyproject: Always run tests verbosely for supported backends....* guix/build-system/pyproject.scm (pyproject-build): Default to '() instead of #false for TEST-FLAGS. * guix/build/pyproject-build-system.scm (check): Unconditionally enable verbose test flags. * doc/guix.texi (Build Systems): Document this change. * gnu/packages/fontutils.scm (python-glyphslib)[arguments]: Remove verbosity from #:test-flags. * gnu/packages/pdf.scm (python-pydyf, weasyprint)[arguments]: Likewise. * gnu/packages/python-web.scm (python-openapi-spec-validator)[arguments]: Likewise. * gnu/packages/python-xyz.scm (python-path, python-tempora)[arguments]: Likewise. Marius Bakke
2022-10-27gnu: python-deepmerge: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-deepmerge)[build-system]: Set to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove obsolete phases. [native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL. Marius Bakke
2022-10-27gnu: python-scikit-build: Switch to pyproject-build-system....* gnu/packages/python-xyz.scm (python-scikit-build)[build-system]: Set to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove obsolete phases. [native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL. Marius Bakke
2022-10-27gnu: python-cattrs: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-cattrs)[build-system]: Set to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove obsolete phases. [native-inputs]: Remove PYTHON-PYPA-BUILD. Marius Bakke
2022-10-27gnu: python-path: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-path-bootstrap)[build-system]: Switch to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove #:phases. [native-inputs]: Remove PYTHON-PYPA-BUILD. (python-path): Remove #:phases. Add #:test-flags. Marius Bakke
2022-10-27gnu: python-openapi-spec-validator: Use pyproject-build-system....* gnu/packages/python-web.scm (python-openapi-spec-validator)[build-system]: Set to PYPROJECT-BUILD-SYSTEM. [arguments]: Add #:test-flags. Remove obsolete phases. [native-inputs]: Remove PYTHON-PYPA-BUILD. Marius Bakke
2022-10-27gnu: python-openapi-schema-validator: Use pyproject-build-system....* gnu/packages/python-web.scm (python-openapi-schema-validator)[build-system]: Set to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove redundant phases. [native-inputs]: Remove PYTHON-PYPA-BUILD. Marius Bakke
2022-10-27gnu: zabbix-cli: Switch to pyproject-build-system....* gnu/packages/monitoring.scm (zabbix-cli)[build-system]: Switch to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove check phase. Marius Bakke
2022-10-27gnu: python-pygmsh: Use pyproject-build-system....* gnu/packages/simulation.scm (python-pygmsh)[build-system]: Switch to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove redundant phases. [native-inputs]: Remove PYTHON-PYPA-BUILD. Marius Bakke
2022-10-27gnu: python-tempora: Switch to pyproject-build-system....* gnu/packages/python-xyz.scm (python-tempora)[build-system]: Switch to PYPROJECT-BUILD-SYSTEM. [arguments]: Add #:test-flags. Remove #:phases. [native-inputs]: Remove PYTHON-PYPA-BUILD. Marius Bakke
2022-10-27gnu: python-mypy-protobuf: Switch to pyproject-build-system....* gnu/packages/protobuf.scm (python-mypy-protobuf)[build-system]: Switch to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove redundant phases. [native-inputs]: Remove PYTHON-PYPA-BUILD. Marius Bakke
2022-10-27gnu: python-ufolib2: Use pyproject-build-system....* gnu/packages/fontutils.scm (python-ufolib2)[build-system]: Switch to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove. [native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL. Marius Bakke
2022-10-27gnu: python-statmake: Use pyproject-build-system....* gnu/packages/fontutils.scm (python-statmake)[build-system]: Switch to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove redundant phases. [native-inputs]: Remove PYTHON-PYPA-BUILD. Marius Bakke