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2019-09-16gnu: neovim: Update to 0.4.2.•••* gnu/packages/vim.scm (neovim): Update to 0.4.2. [arguments]: Remove "patch-tic" phase; add "lua-luv" to "set-lua-paths" phase. [inputs]: Add lua5.1-luv. Ricardo Wurmus
2019-09-16gnu: Add lua-luv.•••* gnu/packages/lua.scm (lua-luv, lua5.1-luv, lua5.2-luv): New variables. (make-lua-luv): New procedure. Ricardo Wurmus
2019-09-16gnu: libvterm: Update to 0.1.•••* gnu/packages/terminals.scm (libvterm): Update to 0.1. Ricardo Wurmus
2019-09-16gnu: evolution: Wrap with required path variables.•••Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36896>. * gnu/packages/gnome.scm (evolution)[arguments]: Add a ‘wrap-program’ phase. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Martin Becze
2019-09-16gnu: Add cl-prevalence.•••* gnu/packages/lisp.scm (cl-prevalence, sbcl-cl-prevalence, ecl-cl-prevalence): New variables. Pierre Neidhardt
2019-09-16gnu: Add s-sysdeps.•••* gnu/packages/lisp.scm (sbcl-s-sysdeps, cl-s-sysdeps, ecl-s-sysdeps): New variables. Pierre Neidhardt
2019-09-16gnu: Add herbstluftwm.•••* gnu/packages/wm.scm (herbstluftwm): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Kyle Andrews
2019-09-16gnu: emacs-dumb-jump: Update to 0.5.3.•••* gnu/packages/emacs-xyz.scm (emacs-dumb-jump): Update to 0.5.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brian Leung
2019-09-16gnu: git-annex: Update to 7.20190912.•••* gnu/packages/haskell-apps.scm (git-annex): Update 7.20190912. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2019-09-16gnu: git-annex: Build with MagicMime support.•••git-annex has a mechanism for configuring whether a file is added to the annex or stored in git. Building with MagicMime support makes it possible to condition the behavior on a file's MIME type. * gnu/packages/haskell-apps.scm (git-annex)[inputs]: Add ghc-magic. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2019-09-16gnu: Add ghc-magic.•••* gnu/packages/haskell-xyz.scm (ghc-magic): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2019-09-16gnu: git-annex: Update license.•••* gnu/packages/haskell-apps.scm (git-annex)[license]: Update main license to AGPLv3+ and include other licenses mentioned in the package's COPYRIGHT file. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2019-09-16services: certbot: Add --manual-public-ip-logging-ok for manual challenges•••* gnu/services/certbot.scm (certbot-command): Add --manual-public-ip-logging-ok flag to the certbot command when doing a manual challenge. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Carlo Zancanaro
2019-09-16gnu: retroarch: Update to 1.7.8.4.•••* gnu/packages/emulators.scm (retroarch): Update to 1.7.8.4. Rutger Helling
2019-09-16gnu: mgba: Update to 0.7.3.•••* gnu/packages/emulators.scm (mgba): Update to 0.7.3. Rutger Helling
2019-09-15gnu: Add r-variancepartition.•••* gnu/packages/bioconductor.scm (r-variancepartition): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-wavetiling.•••* gnu/packages/bioconductor.scm (r-wavetiling): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-genomegraphs.•••* gnu/packages/bioconductor.scm (r-genomegraphs): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-oligo.•••* gnu/packages/bioconductor.scm (r-oligo): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affxparser.•••* gnu/packages/bioconductor.scm (r-affxparser): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-variantfiltering.•••* gnu/packages/bioconductor.scm (r-variantfiltering): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-shinythemes.•••* gnu/packages/cran.scm (r-shinythemes): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-shinytree.•••* gnu/packages/cran.scm (r-shinytree): New variable. Ricardo Wurmus
2019-09-15gnu: Add js-requirejs.•••* gnu/packages/javascript.scm (js-requirejs): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-reqon.•••* gnu/packages/bioconductor.scm (r-reqon): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-seqbias.•••* gnu/packages/bioconductor.scm (r-seqbias): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affycoretools.•••* gnu/packages/bioconductor.scm (r-affycoretools): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-oligoclasses.•••* gnu/packages/bioconductor.scm (r-oligoclasses): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-reportingtools.•••* gnu/packages/bioconductor.scm (r-reportingtools): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-pfam-db.•••* gnu/packages/bioconductor.scm (r-pfam-db): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affycontam.•••* gnu/packages/bioconductor.scm (r-affycontam): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affycompatible.•••* gnu/packages/bioconductor.scm (r-affycompatible): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affycomp.•••* gnu/packages/bioconductor.scm (r-affycomp): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affydata.•••* gnu/packages/bioconductor.scm (r-affydata): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-timeseriesexperiment.•••* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-wavcluster.•••* gnu/packages/bioconductor.scm (r-wavcluster): New variable. Ricardo Wurmus
2019-09-15gnu: r-spam: Update to 2.3-0.•••* gnu/packages/cran.scm (r-spam): Update to 2.3-0. Ricardo Wurmus
2019-09-15gnu: r-feather: Update to 0.3.5.•••* gnu/packages/cran.scm (r-feather): Update to 0.3.5. Ricardo Wurmus
2019-09-15gnu: emacs-zerodark-theme: Update to 4.6.•••* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6. [source]: Update to new source uri. Giacomo Leidi
2019-09-15gnu: Add yubico-pam.•••* gnu/packages/authentication.scm (yubico-pam): New variable. Ricardo Wurmus
2019-09-14gnu: r-delayedmatrixstats: Update to 1.6.1.•••* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1. Ricardo Wurmus
2019-09-14gnu: r-rhdf5lib: Update to 1.6.1.•••* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1. Ricardo Wurmus
2019-09-14gnu: r-rtracklayer: Update to 1.44.4.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4. Ricardo Wurmus
2019-09-14gnu: r-genomicranges: Update to 1.36.1.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1. Ricardo Wurmus
2019-09-14gnu: r-s4vectors: Update to 0.22.1.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1. Ricardo Wurmus
2019-09-14gnu: r-mixomics: Update to 6.8.4.•••* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4. Ricardo Wurmus
2019-09-14gnu: r-gtrellis: Update to 1.16.1.•••* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1. Ricardo Wurmus
2019-09-14gnu: r-regioner: Update to 1.16.4.•••* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4. Ricardo Wurmus
2019-09-14gnu: Add emacs-elixir-mode.•••* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable. Björn Höfling
2019-09-14gnu: wine-staging: Update to 4.16.•••* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16. * gnu/packages/wine.scm (wine-staging): Update to 4.16. Rutger Helling
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