| Age | Commit message (Expand) | Author |
|---|
| 2023-10-05 | gnu: r-ggstatsplot: Update to 0.12.1....* gnu/packages/cran.scm (r-ggstatsplot): Update to 0.12.1.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-datawizard: Update to 0.9.0....* gnu/packages/cran.scm (r-datawizard): Update to 0.9.0.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-activepathways: Update to 2.0.2....* gnu/packages/bioconductor.scm (r-activepathways): Update to 2.0.2.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-valr: Update to 0.7.0....* gnu/packages/bioconductor.scm (r-valr): Update to 0.7.0.
[propagated-inputs]: Add r-lifecycle.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-biomartr: Update to 1.0.5....* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.5.
| Ricardo Wurmus |
| 2023-10-05 | gnu: emacs-telega: Update to 0.8.03-1.17bfa50....* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to
0.8.03-1.17bfa50.
| Andrew Tropin |
| 2023-10-05 | gnu: tdlib: Update to 1.8.16-0.4d1d22d....* gnu/packages/messaging.scm (tdlib): Update to 1.8.16-0.4d1d22d.
| Andrew Tropin |
| 2023-10-05 | gnu: r-aplot: Update to 0.2.1....* gnu/packages/cran.scm (r-aplot): Update to 0.2.1.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-tximeta: Update to 1.18.3....* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.3.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-biodb: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.1.
[propagated-inputs]: Add r-git2r.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-gviz: Update to 1.44.2....* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.2.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-s4vectors: Update to 0.38.2....* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.2.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-biocstyle: Update to 2.28.1....* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.28.1.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-yapsa: Update to 1.26.8....* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.26.8.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-enrichplot: Update to 1.20.3....* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.3.
[propagated-inputs]: Add r-ggfun.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-spectra: Update to 1.10.3....* gnu/packages/bioconductor.scm (r-spectra): Update to 1.10.3.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-keggrest: Update to 1.40.1....* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.40.1.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-genomeinfodb: Update to 1.36.4....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.4.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-ensembldb: Update to 2.24.1....* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.24.1.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-ancombc: Update to 2.2.2....* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.2.
| Ricardo Wurmus |
| 2023-10-05 | gnu: r-omnipathr: Update to 3.8.2....* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.2.
| Ricardo Wurmus |
| 2023-10-05 | gnu: curl: Update to 8.3.0....According to upstream, the current version has 19 security issues.
See also <https://curl.se/docs/vuln-7.85.0.html>.
* gnu/packages/curl.scm (curl/fixed): New variable.
(curl): Use it as replacement.
| Liliana Marie Prikler |
| 2023-10-05 | gnu: openjdk-10: Fix building on aarch64-linux....* gnu/packages/java.scm (openjdk-10)[arguments]: Replace inherited
'patch-for-aarch64 phase for changes in source code layout.
Co-authored-by: Christopher Baines <mail@cbaines.net>
Co-authored-by: Tim Johann <t1m@phrogstar.de>
| Efraim Flashner |
| 2023-10-05 | gnu: universal-ctags: Update to 6.0.20231001.0....* gnu/packages/code.scm (universal-ctags): Update to 6.0.20231001.0.
| Efraim Flashner |
| 2023-10-05 | gnu: tree-sitter-java: Update to 0.20.1....* gnu/packages/tree-sitter.scm (tree-sitter-java): Update to 0.20.1.
Signed-off-by: Andrew Tropin <andrew@trop.in>
| Kjartan Oli Agustsson |
| 2023-10-05 | gnu: emacs-elpy: Update to 1.35.0-2.7ff8ffa....* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.35.0-2.7ff8ffa.
[origin]: Apply patch.
[arguments]: Disable a new test in the disable-broken-tests phase.
* gnu/packages/patches/emacs-elpy-dup-test-name.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
| Maxim Cournoyer |
| 2023-10-04 | gnu: phoronix-test-suite: Do not propagate gcc-toolchain....* gnu/packages/benchmark.scm (gcc-toolchain*): Replace gcc-toolchain-12
reference with gcc-toolchain.
* gnu/packages/benchmark.scm (phoronix-test-suite): Augment wrap-binary phase
with GCC variables.
[propagated-inputs]: Delete field, moving gcc-toolchain to...
[inputs]: ... here.
[search-paths]: New field.
| Maxim Cournoyer |
| 2023-10-04 | gnu: libxpm: Graft with 3.5.17 [security fixes]....Fixes CVE-2023-43788 and CVE-2023-43789. See the X.Org security advisory
<https://lists.x.org/archives/xorg/2023-October/061506.html> for more
information.
* gnu/packages/xorg.scm (libxpm)[replacement]: New field, set to ...
(libxpm/fixed): ... this new variable.
| John Kehayias |
| 2023-10-04 | gnu: libx11: Update replacement to 1.8.7 [security fixes]....Fixes CVE-2023-43785, CVE-2023-43786, and CVE-2023-43787. See the X.Org
security advisory <https://lists.x.org/archives/xorg/2023-October/061506.html>
for more information.
* gnu/packages/xorg.scm (libx11-fixed): Update to 1.8.7.
| John Kehayias |
| 2023-10-04 | gnu: emacs-debbugs: Preserve subject when replying to patch threads....* gnu/packages/patches/emacs-debbugs-keep-patch-subject.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs-xyz.scm (emacs-debbugs) [origin]: Use it.
| Maxim Cournoyer |
| 2023-10-04 | gnu: Remove suitesparse-3....* gnu/packages/maths.scm (suitesparse-3): Delete variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| David Elsing |
| 2023-10-04 | gnu: scilab: Update to 2023.1.0....* gnu/packages/maths.scm (scilab): Update to 2023.1.0.
[source] Use git-fetch.
<modules>: Add (guix build utils) and (ice-9 ftw).
<patches>: Add patch for hdf5 >= 1.10.
<snippet>: Move contents of the "scilab" directory to its parents. Remove
the other files and autogenerated files.
[native-inputs]: Add autoconf, autoconf-archive, automake, bison, eigen, flex,
libtool, ocaml and ocaml-findlib.
[inputs]: Add ocaml-num, replace hdf5-1.8 by hdf5-1.14 and suitesparse-3 by
suitesparse.
[arguments]: Remove quasiquote. Add --enable-build-parser,
--with-eigen-include=..., OCAMLC=... and OCAMLOPT=... to #:configure-flags.
<#:phases>: Add fix-ocaml-num, remove-desktop-files,
bootstrap-dynamic_link-scripts and build-parsers phases. Remove fixes for
compilation and linker errors from the pre-build phase.
[home-page]: Update URL.
[description]: Add two spaces between sentences.
[license]: Update to gpl2 and bsd-3.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| David Elsing |
| 2023-10-04 | gnu: parallel: Update to 20230922....* gnu/packages/parallel.scm (parallel): Update to 20230922.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Andy Tai |
| 2023-10-04 | gnu: freerdp: Update to 2.11.2....* gnu/packages/rdesktop.scm (freerdp): Update to 2.11.2.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Timotej Lazar |
| 2023-10-04 | gnu: guile-mastodon: Update to 0.0.1-0a94ae6b...Message-ID: <0064c4ff9262c4906131909ae1276667033f8811.1696343806.git.ekaitz@elenq.tech>
From: Ekaitz Zarraga <ekaitz@elenq.tech>
Date: Tue, 3 Oct 2023 16:28:58 +0200
Subject: [PATCH] gnu: guile-mastodon: Update to 0.0.1-0a94ae6b
* gnu/packages/guile-xyz.scm (guile-mastodon): Update to 0.0.1-0a94ae6b
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Ekaitz Zarraga |
| 2023-10-04 | gnu: kicad: Update to 7.0.8....* gnu/packages/engineering.scm (kicad): Update to 7.0.8.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Peter Polidoro |
| 2023-10-04 | gnu: ultrastar-deluxe: Update to 2023.9.0....* gnu/packages/games.scm (ultrastar-deluxe): Update to 2023.9.0.
[source]: Use tagged version again.
Tested-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
| Jonathan Brielmaier |
| 2023-10-04 | gnu: r-dofuture: Add r-markdown....* gnu/packages/cran.scm (r-dofuture)[native-inputs]: Add r-markdown.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: Add r-arrayquality....* gnu/packages/bioconductor.scm (r-arrayquality): New variable.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: Add r-arraymvout....* gnu/packages/bioconductor.scm (r-arraymvout): New variable.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: Add r-parody....* gnu/packages/bioconductor.scm (r-parody): New variable.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: Add r-mdqc....* gnu/packages/bioconductor.scm (r-mdqc): New variable.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: Add r-apcomplex....* gnu/packages/bioconductor.scm (r-apcomplex): New variable.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: Add r-org-sc-sgd-db....* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): New variable.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: Add r-hybridmtest....* gnu/packages/bioconductor.scm (r-hybridmtest): New variable.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: Add r-repmis....* gnu/packages/cran.scm (r-repmis): New variable.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: Add r-anota2seq....* gnu/packages/bioconductor.scm (r-anota2seq): New variable.
| Mădălin Ionel Patrașcu |
| 2023-10-04 | gnu: emacs-yeetube: Update to 2.0.5....* gnu/packages/emacs-xyz.scm (emacs-yeetube): Update to 2.0.5.
[arguments]<#:phases>: Update variable names holding executable locations.
| Nicolas Goaziou |
| 2023-10-04 | gnu: emacs-yaml-mode: Update to 0.0.16....* gnu/packages/emacs-xyz.scm (emacs-yaml-mode): Update to 0.0.16.
| Nicolas Goaziou |
| 2023-10-04 | gnu: emacs-org-dynamic-agenda: Update to 0.3.1....* gnu/packages/emacs-xyz.scm (emacs-org-dynamic-agenda): Update to 0.3.1.
| Nicolas Goaziou |
