| Age | Commit message (Expand) | Author |
|---|
| 2021-06-05 | guix: Update to Bioconductor 3.13....* guix/build-system/r.scm (bioconductor-uri): Update version.
* guix/import/cran.scm (%bioconductor-version): Update.
| Ricardo Wurmus |
| 2020-12-09 | import: cran: Update the Bioconductor version to 3.12....* guix/import/cran.scm (%bioconductor-version): Set to 3.12.
* guix/build-system/r.scm (bioconductor-uri): Update to 3.12.
| Roel Janssen |
| 2020-06-30 | build-system/r: bioconductor-uri: Fix archive URL....* guix/build-system/r.scm (bioconductor-uri): Fix archive URL.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| zimoun |
| 2020-06-13 | guix: Update to Bioconductor 3.11....* guix/build-system/r.scm (bioconductor-uri): Use new URL.
* guix/import/cran.scm (%bioconductor-version): Update to 3.11.
| Ricardo Wurmus |
| 2019-12-15 | guix: Upgrade to Bioconductor 3.10....* guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10.
* guix/import/cran.scm (%bioconductor-version): Same.
| Ricardo Wurmus |
| 2019-09-16 | Revert "build-system/r: Use %bioconductor-version."...This reverts commit 41ca406fa54e69f61c55b11ffe5cf465192a907c.
This commit breaks 'guix pull', as reported by Hao Chen.
| Efraim Flashner |
| 2019-09-16 | build-system/r: Use %bioconductor-version....* guix/build-system/r.scm (bioconductor-uri): Use %bioconductor-version
instead of hard-coding the version string.
| Ricardo Wurmus |
| 2019-08-16 | build-system/r: bioconductor-uri: Take optional package type....* guix/build-system/r.scm (bioconductor-uri): Take optional TYPE argument to
return annotation or experiment URLs.
| Ricardo Wurmus |
| 2019-05-06 | guix: Update to Bioconductor 3.9....* guix/build-system/r.scm (bioconductor-uri): Use 3.9 archive URL.
* guix/import/cran.scm (%bioconductor-version): Update to 3.9.
| Ricardo Wurmus |
| 2018-11-06 | guix: Update to Bioconductor 3.8....* guix/import/cran.scm (%bioconductor-version): Update to 3.8.
* guix/build-system/r.scm (bioconductor-uri): Update archive URL.
| Ricardo Wurmus |
| 2018-06-18 | build-system/r: Accept #:r argument....* guix/build-system/r.scm (lower): Add #:r to private-keywords.
| Ricardo Wurmus |
| 2018-06-05 | build-system/r: Update to Bioconductor 3.7....This is a follow-up to 41f17554d88795bf35fbfc3e05301a6d2f64cca0.
* guix/build-system/r.scm (bioconductor-uri): Update to version 3.7.
| Ricardo Wurmus |
| 2017-11-07 | guix: Add archive support for bioconductor-uri....* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL.
* guix/import/cran.scm (latest-bioconductor-release, fetch-description):
Adjust because bioconductor-uri now returns a list.
| Ricardo Wurmus |
| 2017-10-21 | Use HTTPS for bioconductor.org....* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
| Tobias Geerinckx-Rice |
| 2017-03-17 | gnu: r: Rename to r-minimal....* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
| Ricardo Wurmus |
| 2016-03-31 | build-system/r: Support "substitutable?" flag....* guix/build-system/r.scm (r-build): Support the "substitutable?" flag.
| Ricardo Wurmus |
| 2015-12-21 | build: Add bioconductor-uri procedure....* guix/build-system/r.scm (bioconductor-uri): New procedure.
| Ricardo Wurmus |
| 2015-09-21 | build: Add cran-uri procedure....* guix/build-system/r.scm (cran-uri): New procedure.
| Ricardo Wurmus |
| 2015-08-31 | build: Add R build system....* guix/build-system/r.scm: New file.
* guix/build/r-build-system: New file.
* Makefile.am (MODULES): Add new files.
* doc/guix.texi (Build Systems): Document r-build-system.
| Ricardo Wurmus |
