| Age | Commit message (Expand) | Author |
|---|
| 2024-01-22 | import/cran: Set HOME when ExperimentHub is among the inputs.•••* guix/import/cran.scm (phases-for-inputs): Add 'set-HOME phase when
ExperimentHub is among inputs.
Change-Id: Ie3a2443934704eed8694a76a651b806209722421
| Ricardo Wurmus |
| 2024-01-22 | import/cran: Also update annotation and experiment packages.•••* guix/import/cran.scm (latest-bioconductor-release): Determine package type
and pass it to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(%bioconductor-updater): Compose all bioconductor predicates.
Change-Id: Icef3ae05e28ed0f2796d9abf90e51821d2dfcc4c
| Ricardo Wurmus |
| 2024-01-21 | import/cran: Generate rudimentary ARGUMENTS field.•••* guix/import/cran.scm (phases-for-inputs, maybe-arguments): New procedures.
(description->package): Splice in result of MAYBE-ARGUMENTS.
Change-Id: I578e1903f37c91bf865f0be49b04187ec372ed05
| Ricardo Wurmus |
| 2024-01-18 | import/cran: Add transformation for "packaging".•••* guix/import/cran.scm (transform-sysname): Add case for "python-packaging".
Change-Id: I0d125fb3858c009a8527d60f56754b9b9c90b409
| Ricardo Wurmus |
| 2024-01-17 | import/cran: Accept optional alternative download procedure.•••This is useful for cached mass imports.
* guix/import/cran.scm (fetch-description-from-tarball): Accept optional
download keyword.
(fetch-description): Accept optional replacement-download argument.
Change-Id: Ic917074656ac34a24c8e7eea3d3e0528fc5180b3
| Ricardo Wurmus |
| 2024-01-16 | import/cran: Add more invalid package names and translations.•••These were encountered in a mass import of Bioconductor packages.
* guix/import/cran.scm (invalid-packages): Add "rtools".
(transform-sysname): Add aliases for Python and bioinformatics packages.
Change-Id: I97e13cee10c2ee85d4b9296d91afccbdbcec4946
| Ricardo Wurmus |
| 2024-01-16 | import/cran: Add more invalid package names and translations.•••* guix/import/cran.scm (invalid-packages): Add "build-essential".
(transform-sysname): Add aliases for openssl, libxml2, and zlib.
Change-Id: Ia142ebc388dbcd47caf3b2c5165bc21227bc1832
| Ricardo Wurmus |
| 2024-01-01 | import/cran: Restore format-inputs.•••This fixes a regression introduced in commit
e6223017d95bc615b2648f0798d9a3904d5b5f57 causing the selected input style to
be ignored.
* guix/import/cran.scm (format-inputs): New procedure.
(maybe-inputs): Use it.
Change-Id: I0d36f972fcb9888ed2be4ec9360bbcab13c25c5d
| Ricardo Wurmus |
| 2024-01-01 | import/cran: Add invalid package.•••* guix/import/cran.scm (invalid-packages): Add libR.
Change-Id: I1e06b44785051dfc4fb85ba06062aa8c8e003495
| Ricardo Wurmus |
| 2023-12-19 | import/cran: Export a few more variables and procedures.•••This allows users of this module to provide e.g. caching alternatives to the
download and fetch procedures.
* guix/import/cran.scm (%bioconductor-version, download, fetch-description):
Make these variables public.
Change-Id: I9ce14db9be9b8b3314b06fa9eb50a4e24c5dd718
| Ricardo Wurmus |
| 2023-11-03 | guix: Upgrade to Bioconductor 3.18.•••* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.18.
* guix/import/cran.scm (%bioconductor-version): Same.
Change-Id: Ic3fc2e6ab6b5f6f6e55662f81baee67391158c5b
| Ricardo Wurmus |
| 2023-07-12 | import/cran: Add one more package name transformation.•••* guix/import/cran.scm (transform-sysname): Add entry for "zlib-devel".
| Ricardo Wurmus |
| 2023-06-14 | import/cran: Add another clause for ASL 2.0.•••* guix/import/cran.scm (string->license): Add clause for >= 2.0.
| Ricardo Wurmus |
| 2023-06-05 | import/cran: Ensure current package is not among inputs.•••* guix/import/cran.scm (cran-package-inputs): Remove the current package from
the result.
| Ricardo Wurmus |
| 2023-06-02 | import/cran: string->license: Add another case for GPLv3+.•••* guix/import/cran.scm (string->license): Translate "GPL (>=3)" to gpl3+.
| Ricardo Wurmus |
| 2023-06-02 | import/cran: Libraries should not use CRAN-GUIX-NAME.•••* guix/import/cran.scm (source-dir->dependencies): Do not use CRAN-GUIX-NAME
when processing result of NEEDED-LIBRARIES-IN-DIRECTORY.
| Ricardo Wurmus |
| 2023-06-02 | import/cran: Also search Makevars file for libraries.•••* guix/import/cran.scm (needed-libraries-in-directory): Look at Makevars in
addition to Makevars.in for libraries.
| Ricardo Wurmus |
| 2023-05-31 | upstream: Replace 'input-changes' field by 'inputs'.•••Returning the expected list of inputs rather than changes relative to
the current package definition is less ambiguous and offers more
possibilities for further processing.
* guix/upstream.scm (<upstream-source>)[input-changes]: Remove.
[inputs]: New field.
(<upstream-input>): New record type.
* guix/upstream.scm (upstream-input-type-predicate)
(input-type-filter, upstream-source-regular-inputs)
(upstream-source-native-inputs, upstream-source-propagated-inputs): New
procedures.
(changed-inputs): Expect an <upstream-source> as its second argument.
Adjust accordingly.
* guix/import/pypi.scm (distribution-sha256): New procedure.
(maybe-inputs): Expect a list of <upstream-input>.
(compute-inputs): Rewrite to return a list of <upstream-input>.
(pypi-package-inputs, pypi-package->upstream-source): New procedures.
(make-pypi-sexp): Use it.
* guix/import/stackage.scm (latest-lts-release): Define 'cabal'.
Replace 'input-changes' field by 'inputs'.
* guix/scripts/refresh.scm (update-package): Use 'changed-inputs'
instead of 'upstream-source-input-changes'.
* tests/cran.scm ("description->package"): Adjust order of inputs.
* tests/pypi.scm (default-sha256, default-sha256/base32): New variables.
(foo-json): Add 'digests' entry.
("pypi->guix-package, no wheel"): Check HASH against DEFAULT-SHA256/BASE32.
("pypi->guix-package, wheels"): Likewise.
("pypi->guix-package, no usable requirement file."): Likewise.
("pypi->guix-package, package name contains \"-\" followed by digits"):
Likewise.
("package-latest-release"): New test.
* tests/upstream.scm (test-package-sexp): Remove.
("changed-inputs returns no changes"): Rewrite to use <upstream-source>.
(test-new-package-sexp): Remove.
("changed-inputs returns changes to plain input list"): Rewrite.
("changed-inputs returns changes to all plain input lists"): Likewise.
("changed-inputs returns changes to labelled input list")
("changed-inputs returns changes to all labelled input lists"): Remove.
* guix/import/cran.scm (maybe-inputs): Expect PACKAGE-INPUTS to be a
list of <upstream-input>.
(source-dir->dependencies): Return a list of <upstream-input>.
(vignette-builders): Likewise.
(uri-helper, cran-package-source-url)
(cran-package-propagated-inputs, cran-package-inputs): New procedures.
(description->package): Use them instead of local definitions.
(latest-cran-release): Replace 'input-changes' field by 'inputs'.
(latest-bioconductor-release): Likewise.
(format-inputs): Remove.
* guix/import/hackage.scm (cabal-package-inputs): New procedure.
(hackage-module->sexp): Use it.
[maybe-inputs]: Expect a list of <upstream-input>.
| Ludovic Courtès |
| 2023-04-29 | import/cran: Translate from xml2 to libxml2.•••* guix/import/cran.scm (transform-sysname): Add translation from xml2 to
libxml2.
| Ricardo Wurmus |
| 2023-04-29 | import/cran: Add "unix" to list of invalid packages.•••* guix/import/cran.scm (invalid-packages): Add "unix".
| Ricardo Wurmus |
| 2023-04-29 | guix: Upgrade to Bioconductor 3.16.•••* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.17.
* guix/import/cran.scm (%bioconductor-version): Same.
| Ricardo Wurmus |
| 2023-03-13 | guix: Strip #:use-module lists.•••This was obtained by setting up this environment:
guix shell -D guix --with-input=guile@3.0.9=guile-next \
--with-commit=guile-next=e2ed33ef0445c867fe56c247054aa67e834861f2
-- make -j5
then adding 'unused-module' to (@@ (guix build compiler) %warnings),
building, and checking all the "unused module" warnings and removing
those that were definitely unused.
| Ludovic Courtès |
| 2023-02-18 | import/cran: Remove directory-needs-zlib? in favor of needed-libraries-in-dir...•••* guix/import/cran.scm (directory-needs-zlib?): Remove procedure.
(source-dir->dependencies): Use needed-libraries-in-directory instead of
directory-needs-zlib?.
| Ricardo Wurmus |
| 2023-02-18 | import/cran: Add generic way to detect needed libraries.•••* guix/import/cran.scm (needed-libraries-in-directory): New procedure.
(libraries-pattern, packages-for-matches): New variables.
| Ricardo Wurmus |
| 2023-02-18 | import/cran: Process all vignette builders.•••* guix/import/cran.scm (needs-knitr?): Remove procedure.
(vignette-builders): New procedure.
(description->package): Use vignette-builders instead of needs-knitr?.
| Ricardo Wurmus |
| 2023-02-18 | import/cran: Add name mapping for libjpeg.•••* guix/import/cran.scm (transform-sysname): Add mapping from libjpeg to
libjpeg-turbo.
| Ricardo Wurmus |
| 2023-02-18 | import/cran: Add directory-needs-esbuild?.•••* guix/import/cran.scm (directory-needs-esbuild?): New procedure.
(source-dir->dependencies): Use it.
| Ricardo Wurmus |
| 2023-01-09 | import/cran: Fix Bioconductor updater.•••* guix/import/cran.scm (latest-bioconductor-release): Use LATEST-VERSION
instead of VERSION, which is always #F.
| Ricardo Wurmus |
| 2022-12-31 | import/cran: Depend on gfortran if .f files are detected too.•••There was an inconsistency between tarball-needs-fortran? and
directory-needs-fortran?.
* guix/import/cran.scm (directory-needs-fortran?): Match .f files too.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Use multiple values instead of a list of lists.•••* guix/import/cran.scm (source-dir->dependencies): Return multiple values.
(description->package): Bind two values.
| Ricardo Wurmus |
| 2022-12-31 | import/cran: Always operate on source directory.•••Extracting the source tarball multiple times is very slow and a
speedup of >2x (without network I/O) can be achieved by coalescing all
NEEDS-X? functions into a single one, which extracts a tarball only once.
* guix/import/cran.scm (tarball-needs-fortran?): Remove unused function.
(needs-fortran?): Ditto.
(tarball-files-match-pattern?): Ditto.
(tarball-needs-zlib?): Ditto.
(needs-zlib?): Ditto.
(tarball-needs-pkg-config?): Ditto.
(needs-pkg-config?): Ditto.
(source-dir->dependencies): New function.
(source->dependencies): New function.
(description->package): Use it.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Translate more package dependencies.•••Assumes we use package variable names, not package specification names.
* guix/import/cran.scm (invalid-packages): Add more invalid names.
(transform-sysname): Transform more package names.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Allow overriding tarball download.•••* guix/import/cran.scm (description->package): Accept new keyword argument
DOWNLOAD-SOURCE.
(cran->guix-package): Ditto.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Allow overriding description fetch function.•••* guix/import/cran.scm (cran->guix-package): New keyword argument
FETCH-DESCRIPTION.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Allow custom license prefix.•••* guix/import/cran.scm (string-licenses): Add license-prefix argument.
(string->license): Ditto.
(description->package): Ditto.
(cran->guix-package): Ditto.
(cran-recursive-import): Ditto.
* guix/scripts/import/cran.scm (%options): Add new option -p/--license-prefix.
(show-help): Document it.
(parse-options): Pass it to importer.
* doc/guix.texi (Invoking guix import): Document it.
| Lars-Dominik Braun |
| 2022-12-31 | import/utils: Pass all arguments through to package builder.•••Individual importer may have additional arguments.
* guix/import/utils.scm (recursive-import): Patch all keyword arguments
through to repo->guix-package.
* guix/import/cran.scm (cran->guix-package): Add #:allow-other-keys.
* guix/import/crate.scm (crate->guix-package): Ditto.
* guix/import/egg.scm (egg->guix-package): Ditto.
* guix/import/elm.scm (elm->guix-package): Ditto.
* guix/import/gem.scm (gem->guix-package): Ditto.
* guix/import/gnu.scm (gnu->guix-package): Ditto.
* guix/import/go.scm (go-module->guix-package): Ditto.
(go-module-recursive-import): Ditto.
* guix/import/hackage.scm (hackage->guix-package): Ditto.
(hackage-recursive-import): Ditto.
* guix/import/hexpm.scm (hexpm->guix-package): Ditto.
* guix/import/minetest.scm (minetest->guix-package): Ditto.
(minetest-recursive-import): Ditto.
* guix/import/opam.scm (opam->guix-package): Ditto.
* guix/import/pypi.scm (pypi->guix-package): Ditto.
* guix/import/stackage.scm (stackage->guix-package): Ditto.
(stackage-recursive-import): Ditto.
* guix/import/texlive.scm (texlive->guix-package): Ditto.
| Lars-Dominik Braun |
| 2022-12-26 | import: Issue error-message if version is given.•••These importer don't support importing a specific version, thus the updater
does neither. Issue an error message in case version is given.
* guix/import/cpan.scm (latest-release),
guix/import/elpa.scm (latest-release),
guix/import/hackage.scm (latest-release),
guix/import/minetest.scm (latest-minetest-release),
guix/import/opam.scm (latest-release): Add #:version argument,
issue error if version is given.
* guix/import/cran.scm (latest-cran-release): Same.
(latest-bioconductor-release) Same. <version>: rename to <latest-version>.
* guix/import/stackage.scm (latest-lts-release): For each generated updater,
add #:version argument and issue error if version is given.
| Hartmut Goebel |
| 2022-12-26 | upstream-updater: Rename record field.•••The next commits will make the functions, which are currently importing the
latest version of a package, change into importing the latest or a given
version of the package (for those updaters supporting specifying a version).
Thus the name ‘latest‘ is no longer appropriate.
* guix/upstream.scm (upstream-updater) Rename field [latest] to
[import]. (lookup-updater, package-latest-release) Adjust fieldname
accordingly.
* guix/gnu-maintenance.scm (%gnu-updater, %gnu-ftp-updater,
%savannah-updater, %sourceforge-updater, %xorg-updater,
%kernel.org-updater, %generic-html-updater),
guix/import/cpan.scm (%cpan-updater),
guix/import/cran.scm (%cran-updater, %bioconductor-updater),
guix/import/crate.scm (%crate-updater),
guix/import/egg.scm (%egg-updater),
guix/import/elpa.scm (%elpa-updater),
guix/import/gem.scm (%gem-updater),
guix/import/git.scm (%generic-git-updater),
guix/import/github.scm (%github-updater),
guix/import/gnome.scm (%gnome-updater),
guix/import/hackage.scm (%hackage-updater),
guix/import/hexpm.scm (%hexpm-updater),
guix/import/kde.scm (%kde-updater),
guix/import/launchpad.scm (%launchpad-updater),
guix/import/minetest.scm (%minetest-updater),
guix/import/opam.scm (%opam-updater),
guix/import/pypi.scm (%pypi-updater),
guix/import/stackage.scm (%stackage-updater),
tests/import-github.scm (found-sexp)
tests/transformations.scm ("options->transformation, with-latest"):
Adjust fieldname accordingly.
| Hartmut Goebel |
| 2022-12-19 | import/cran: Add more mappings from sysnames to Guix package names.•••* guix/import/cran.scm (transform-sysname): Add more mappings.
| Ricardo Wurmus |
| 2022-11-29 | import/cran: Add package name mapping.•••* guix/import/cran.scm (transform-sysname): Add mapping from sqlite3 to sqlite.
| Ricardo Wurmus |
| 2022-11-24 | guix: Upgrade to Bioconductor 3.16.•••* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.16.
* guix/import/cran.scm (%bioconductor-version): Same.
| zimoun |
| 2022-11-16 | import/cran: Add package mapping for freetype.•••* guix/import/cran.scm (transform-sysname): Map "freetype2" to "freetype".
| Ricardo Wurmus |
| 2022-11-11 | import/cran: Add package name mapping for "booktabs".•••* guix/import/cran.scm (transform-sysname): Add mapping for "booktabs".
| Ricardo Wurmus |
| 2022-11-11 | import/cran: Add more strings to the list of invalid packages.•••* guix/import/cran.scm (invalid-packages): Add "c++", "c++17", and
"posix.1-2001" to list of invalid packages.
| Ricardo Wurmus |
| 2022-09-28 | import/cran: Process more complex license strings.•••* guix/import/cran.scm (string->license): Add more match clauses.
(string->licenses): Split license conjunctions at "|" and apply
string->license on each license.
(description->package): Use string->licenses.
| Ricardo Wurmus |
| 2022-09-28 | import/cran: Use beautify-synopsis.•••* guix/import/cran.scm (description->package): Use beautify-synopsis.
| Ricardo Wurmus |
| 2022-09-28 | import/cran: Transform external package names to Guix names.•••* guix/import/cran.scm (transform-sysname): New procedure.
(description->package): Use it on inputs that are derived from "sysdepends".
| Ricardo Wurmus |
| 2022-09-28 | import/cran: Add more strings to invalid-packages.•••* guix/import/cran.scm (invalid-packages): Add none, windows, and xcode.
| Ricardo Wurmus |
| 2022-09-20 | import/cran: description->package: Use COND and computed booleans.•••* guix/import/cran.scm (description->package): Use COND with previously
computed booleans instead of using CASE on REPOSITORY.
| Ricardo Wurmus |
| 2022-09-20 | import/cran: download: Accept optional REF argument.•••* guix/import/cran.scm (download): Accept REF argument for git downloads.
| Ricardo Wurmus |
