| Age | Commit message (Expand) | Author |
|---|
| 2017-03-17 | gnu: r: Do not build recommended packages....* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
| Ricardo Wurmus |
| 2017-03-16 | utils: Move base16 procedures to (guix base16)....* guix/utils.scm (bytevector->base16-string, base16-string->bytevector):
Move to...
* guix/base16.scm: ... here. New file.
* tests/utils.scm ("bytevector->base16-string->bytevector"): Move to...
* tests/base16.scm: ... here. New file.
* Makefile.am (MODULES): Add guix/base16.scm.
(SCM_TESTS): Add tests/base16.scm.
* build-aux/download.scm, guix/derivations.scm,
guix/docker.scm, guix/import/snix.scm, guix/pk-crypto.scm,
guix/scripts/authenticate.scm, guix/scripts/download.scm,
guix/scripts/hash.scm, guix/store.scm, tests/hash.scm,
tests/pk-crypto.scm: Adjust imports accordingly.
| Ludovic Courtès |
| 2017-02-14 | import: stackage: Avoid using (guix ui) in importer code....* guix/import/stackage.scm (stackage->guix-package, stackage-lts-info-fetch):
Raise 'message' condition instead of using 'leave' from (guix ui).
* guix/scripts/import/stackage.scm (guix-import-stackage): Handle conditions.
| Federico Beffa |
| 2017-02-09 | import: hackage: Handle unknown packages gracefully....* guix/import/hackage.scm (hackage-fetch): Add 'guard'.
| Federico Beffa |
| 2017-02-09 | import: Add stackage importer and updater....* guix/import/stackage.scm: New file.
* guix/scripts/import/stackage.scm: New file.
* Makefile.am (MODULES): Add new files.
* guix/scripts/import.scm (importers): Add "stackage".
* guix/scripts/refresh.scm (%updaters): Add %stackage-updater.
* doc/guix.texi (Invoking 'guix import'): Document the importer.
(Invoking 'guix refresh'): Add stackage to option --type valid values.
* guix/import/hackage.scm (guix-package->hackage-name, hackage-fetch,
hackage-source-url, hackage-cabal-url, hackage-package?): Export them.
| Federico Beffa |
| 2017-02-09 | import: json: Explicitly ask for JSON data....* guix/import/json.scm (json-fetch): Add #:headers to http-fetch call.
| Federico Beffa |
| 2017-02-08 | import: pypi: Correctly handle multiple-URL origins....Fixes <https://bugs.gnu.org/25635>.
Reported by Sergei Trofimovich <slyfox@inbox.ru>.
* guix/import/pypi.scm (guix-package->pypi-name)[url->pypi-name]: New
procedure.
Rewrite body to match lists in addition to strings.
* tests/pypi.scm ("guix-package->pypi-name, several URLs"): New test.
| Ludovic Courtès |
| 2017-01-28 | Add (guix memoization)....* guix/combinators.scm (memoize): Remove.
* guix/memoization.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/packages.scm, gnu/packages/bootstrap.scm,
guix/build-system/gnu.scm, guix/build-system/python.scm,
guix/derivations.scm, guix/gnu-maintenance.scm,
guix/import/cran.scm, guix/import/elpa.scm,
guix/modules.scm, guix/scripts/build.scm,
guix/scripts/graph.scm, guix/scripts/lint.scm,
guix/store.scm, guix/utils.scm: Adjust imports accordingly.
| Ludovic Courtès |
| 2017-01-28 | import: github: Better tolerate unexpected file extensions....* guix/import/github.scm (find-extension): Add ".tbz".
(updated-github-url): When 'find-extension' returns #f, use "" for EXT.
| Ludovic Courtès |
| 2017-01-26 | import: pypi: Don't add setuptools to propagated-inputs....* guix/import/pypi.scm (compute-inputs): Don't add setuptools to the imported
package's propagated-inputs.
| Carlo Zancanaro |
| 2017-01-19 | import: github: Catch HTTP 403 error during fetch....* guix/import/github.scm (json-fetch*): Catch 403 HTTP error that may be
raised if a github token has not been set.
Signed-off-by: Mathieu OTHACEHE <m.othacehe@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Mathieu OTHACEHE |
| 2017-01-13 | http-client: Provide 'User-Agent' header by default....* guix/http-client.scm (http-fetch): Add #:headers parameter and honor
it. Rename 'auth-header' to 'headers'.
* guix/import/github.scm (json-fetch*): Add comment about required
User-Agent.
| Ludovic Courtès |
| 2017-01-13 | import: github: Fix regression on the /releases retrieval....Fixes a regression introduced in
62bd24db39a86f80242f923eb4cc2f18f3b02c67, which introduced a call to
'hash-table->alist'.
* guix/import/github.scm (json-fetch*): New procedure.
(latest-released-version): Use it.
| Ludovic Courtès |
| 2017-01-01 | build-system: cargo: Handle Cargo.lock file not present....* guix/build-system/cargo.scm (cargo-build): Add src output.
(private-keywords): Add #:outputs.
* guix/build/cargo-build-system.scm (configure): Use /share/rust-source
when replacing inputs.
(build, check): Don't do anything when there isn't a Cargo.lock file
present.
(install): Install sources to src output. When a Cargo.lock file is
present use cargo install to install binaries to out.
* guix/import/crate.scm (make-crate-sexp): Importer uses the src output
for crate inputs by default.
* guix/import/utils.scm (package-names->package-inputs, maybe-inputs,
maybe-native-inputs): Take an optional output argument.
* tests/crate.scm (crate->guix-package test): Update.
Problem reported by Francisco Gómez García <espectalll@kydara.com>.
| David Craven |
| 2017-01-01 | import: crate: Provide a default home-page value....* guix/import/crate.scm (make-crate-sexp): Provide a default home-page
value.
* tests/crate.scm (test-crate): Add repository field.
Problem reported by ng0 <ng0@libertad.pw>.
| David Craven |
| 2016-12-29 | import: elpa: Import dependencies as propagated-inputs...* guix/import/elpa.scm (elpa-package->sexp): Import dependencies as
propagated-inputs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Carlo Zancanaro |
| 2016-12-29 | import: elpa: Fix call-with-downloaded-file...* guix/import/elpa.scm (call-with-downloaded-file): Make function behaviour
match documentation string.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Carlo Zancanaro |
| 2016-12-20 | import: github: Use 'json-fetch'....* guix/import/github.scm (json-fetch*): Remove.
(latest-released-version): Adjust accordingly.
| Ludovic Courtès |
| 2016-12-20 | import: pypi: Match new 'pypi-uri' domain in updater....* guix/import/pypi.scm (pypi-package?): Match pypi.io domain.
| Marius Bakke |
| 2016-12-17 | import cran: Handle HTTP errors....Fixes <http://bugs.gnu.org/23479>.
* guix/import/cran.scm (fetch-description): Return #f in case of HTTP
errors.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Add recursive importer....* guix/import/cran.scm (recursive-import): New variable.
(cran->guix-package): Memoize the procedure.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Ignore default R packages....* guix/import/cran.scm (default-r-packages): New variable.
(description->package): Drop default R packages from list of inputs.
| Ricardo Wurmus |
| 2016-12-17 | import cran: description->package: Also return package dependencies....* guix/import/cran.scm (description->package): Return package
dependencies in addition to generated package expression.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Move guix-name to top-level....* guix/import/cran.scm (guix-name): Move to top-level.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Remove more invalid characters from package names....* guix/import/cran.scm (guix-name): Replace period and underscore with
dash; always prepend package names with "r-".
| Ricardo Wurmus |
| 2016-12-17 | import cran: Handle BSD licenses with LICENSE file....* guix/import/cran.scm (string->license): Add cases for BSD licenses
with LICENSE file.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Translate MIT to the Expat license....* guix/import/cran.scm (string->license): Translate "MIT" license to
Expat license.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Do not use "or later" licenses by default....* guix/import/cran.scm (string->license): Use exact license versions.
| Ricardo Wurmus |
| 2016-12-14 | import: Add updater for rust crates....* guix/import/crate.scm (crate-package?, latest-release,
%crate-updater): New variables.
* guix/scripts/refresh.scm (%updaters): Add crate updater.
* doc/guix.texi: Add crate updater to table.
| David Craven |
| 2016-12-14 | import: Add importer for rust crates....* guix/import/crate.scm: New file.
* guix/scripts/import/crate.scm: New file.
* guix/scripts/import.scm (importers): Add crate importer.
* tests/crate.scm: New file.
* doc/guix.texi: Add crate importer to table.
* Makefile.am (MODULES, SCM_TESTS): Add files.
| David Craven |
| 2016-12-14 | import: utils: Add some utilities....* guix/import/utils.scm (maybe-inputs, maybe-native-inputs,
package->definition): New variables.
| David Craven |
| 2016-12-12 | import: cpan: Add updater....* guix/import/cpan.scm (module->dist-name): Fetch the field of interest.
(cpan-fetch): Accept release name rather than module name.
(fix-source-url): Rename to ...
(cpan-source-url): ... this. Take metadata as parameter.
(package->upstream-name, cpan-version, cpan-package?, latest-release):
New procedures.
(cpan-module->sexp): Use cpan-version and cpan-source-url.
(%cpan-updater): New variable.
* guix/scripts/refresh.scm (%updaters): Add %CPAN-UPDATER.
| Eric Bavier |
| 2016-12-12 | import: cpan: Move core-module? to top-level....* guix/import/cpan.scm (cpan-module->sexp): Move local core-module?
procedure to ...
(core-module?): ... here.
| Eric Bavier |
| 2016-12-12 | import: json: Silence json-fetch output....* guix/import/json.scm (json-fetch): Use http-fetch instead of url-fetch
to avoid writing to stdout and a temporary file for each invocation.
* guix/import/gem.scm (rubygems-fetch): Do not redirect json-fetch
output to /dev/null.
* guix/import/pypi.scm (pypi-fetch): Likewise.
| Eric Bavier |
| 2016-11-14 | import/cpan: Maybe coerce version to string....* guix/import/cpan.scm (cpan-module->sexp) <version>: Test if version in
meta is string or number. If it is number, coerce to string.
| Alex Sassmannshausen |
| 2016-11-03 | import: cran: Fix off-by-one error....* guix/import/cran.scm (package->upstream-name): Do not include leading
slash in upstream name URL.
| Ricardo Wurmus |
| 2016-10-26 | import cran: Use URL for Bioconductor 3.4....* guix/import/cran.scm (%bioconductor-svn-url): Update to release URL
for version 3.4.
| Ricardo Wurmus |
| 2016-10-23 | import: pypi: All inputs are propagated-inputs by default....* guix/import/pypi.scm (maybe-inputs): Return inputs as
"propagated-inputs".
| Hartmut Goebel |
| 2016-10-16 | import: utils: Remove dependency on (json) module....This fixes a regression introduced by commit
fbe9c1012820ab72f022a6ec958c35b431ae7a74.
* guix/import/utils.scm: Remove unused (json) module.
| Alex Kost |
| 2016-10-10 | import: github: Add .love extension....* guix/import/github.scm (find-extension): Add '.love' extension to the
list of extensions checked.
| Efraim Flashner |
| 2016-09-28 | import: utils: Refactor license->symbol....* guix/import/utils.scm (license->symbol): Work for all licenses.
* tests/import-utils.scm (license->symbol): Add test.
| David Craven |
| 2016-09-28 | import: utils: Add spdx-string->license....* guix/import/utils.scm (spdx-string->license): New variable.
* guix/licenses.scm (agpl1, fdl1.2+): New variables.
| David Craven |
| 2016-09-28 | import: Move string->license to importers....* guix/import/gem.scm (string->license): Move from (guix import utils).
* guix/import/pypi.scm (string->license): Move from (guix import utils).
| David Craven |
| 2016-09-28 | import: Reorder imports in (guix import utils)....* guix/import/utils.scm (define-module): Reorder imports alphabetically.
| David Craven |
| 2016-08-30 | import: hackage: Default to https urls....* guix/import/hackage.scm (hackage-source-url, hackage-cabal-url): Use https
for hackage.haskell.org.
| ng0 |
| 2016-08-30 | import: cpan: Use tls to query api.metacpan.org....* guix/import/cpan.scm (module->dist-name, cpan-fetch-module): Use tls
for api.metacpan.org.
Signed-off-by: Eric Bavier <bavier@member.fsf.org>
| ng0 |
| 2016-08-28 | import: Importers return prefixed licenses....* guix/import/utils.scm
(define-module): Import licenses with license: prefix.
(string->licenses): Use prefixed licenses.
(license->symbol): Return symbols with the prefix license:.
* guix/tests/pypi.scm (pypi->guix-package): Update test cases.
* guix/tests/gem.scm (gem->guix-package): Update test case.
| David Craven |
| 2016-07-26 | import: pypi: Correctly handle new-style URLs....Fixes <http://bugs.gnu.org/23997>.
* guix/import/pypi.scm (guix-package->pypi-name): Rewrite using
'basename' and 'hyphen-package-name->name+version'.
* tests/pypi.scm ("guix-package->pypi-name, old URL style")
("guix-package->pypi-name, new URL style"): New tests.
| Ludovic Courtès |
| 2016-07-03 | import: cpan: Use our mirrors for 'https' URLs....* guix/import/cpan.scm (fix-source-url): New procedure.
(cpan-module->sexp): Use it to construct our source-url.
* tests/cpan.scm: Add tests for fix-source-url.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Alex Sassmannshausen |
| 2016-06-25 | import: pypi: do not fail when 'run_requires' is missing from the metadata....* guix/import/pypi.scm (read-wheel-metadata): do not crash when 'run_requires'
is missing from the metadata.
| Cyril Roelandt |
