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2019-09-18import: pypi: Refresher recognizes pythonhosted.org source URLs....This is a followup to a5376200541abf8245973e601be246bf65b8b6c7. Since that commit, 'pypi-package?' would return false for most Python packages, and thus "guix refresh python-xxx" would report that no updaters apply to the package. * guix/import/pypi.scm (pypi-package?)[pypi-url?]: Recognize "files.pythonhosted.org" URLs. Ludovic Courtès
2019-09-16import/cran: Export %bioconductor-version....* guix/import/cran.scm (%bioconductor-version): Export it. Ricardo Wurmus
2019-09-14import/utils: beautify-description: Recognize more fragments....* guix/import/utils.scm (beautify-description): Handle additional common initial sentence fragments in descriptions. Ricardo Wurmus
2019-09-10import: KDE updater finds packages even in sub-directory....Fixes <http://issues.guix.gnu.org/issue/30345> and finally fixes <http://issues.guix.gnu.org/issue/25020>. Formerly packages living in a path like /stable/frameworks/5.60/portingAids/kross-5.60.0.tar.xz have not been found. * guix/import/kde.scm (uri->kde-path-pattern): New procedure. (latest-kde-release): Use pattern to search for file. Hartmut Goebel
2019-09-10upstream: Move KDE updater into a separate module....As it was done for (guix import gnome). * guix/import/kde.scm: New file. * Makefile.am (MODULES): Add it. * guix/gnu-maintenance.scm (%kde-updater) (%kde-file-list-uri) (download.kde.org-files) (latest-kde-release): Remove. Hartmut Goebel
2019-09-10import: crate: Allow imports of a specific version....* guix/import/crate.scm (crate->guix-package): Add optional 'version' argument and honor it. * guix/scripts/import/crate.scm (guix-import-crate): Assume the first argument is a spec and destructure it with 'package-name->name+version'. Pass both to 'crate->guix-package'. * doc/guix.texi (Invoking guix import): Document it. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Martin Becze
2019-09-08import: github: Fix incorrect no-release case....This is a followup to 81c3dc32244a17241d74eea9fa265edfcb326f6d. Since that commit, when /releases returned an empty JSON array, we would not fall back to /tags because of the incorrect match. * guix/import/github.scm (fetch-releases-or-tags): Match the empty vector instead of the empty list. Ludovic Courtès
2019-09-04import: opam: Use propagated-inputs instead of inputs....* guix/import/opam.scm (opam->guix-package): Use propagated-inputs instead of inputs. Julien Lepiller
2019-09-04import: opam: Remove initial "v" in some version numbers....* guix/import/opam.scm (opam-fetch): Remove initial "v" in some version numbers. Julien Lepiller
2019-09-04import: crate: Correct interpretation of dual-licensing strings....* guix/import/crate.scm (%dual-license-rx): New variable. (crate->guix-package)[string->license]: Rewrite to match it. * tests/crate.scm (test-crate): Adjust "license" field to current practice. Ludovic Courtès
2019-09-04import: crate: Separate crates.io API from actual conversion....This provides a clean separation between bindings to the https://crates.io/api/v1 API and actual conversion to Guix package sexps. As a side-effect, it fixes things like "guix import blake2-rfc", "guix refresh -t crates", etc. * guix/import/crate.scm (<crate>, <crate-version>, <crate-dependency>): New record types. (lookup-crate, crate-version-dependencies): New procedures. (crate-fetch): Remove. (crate->guix-package): Rewrite to use the new API. (latest-release): Likewise. * guix/build-system/cargo.scm (%crate-base-url): New variable. * tests/crate.scm (test-crate): Update accordingly. fixlet Ludovic Courtès
2019-09-02import: cran: Only use the git import with what looks like a URL....* guix/import/cran.scm (fetch-description): Abort if the argument does not look like a URL. Ricardo Wurmus
2019-09-02import: cran: Retry failed git imports on Bioconductor....* guix/import/cran.scm (cran->guix-package): Retry failed git imports on Bioconductor. Ricardo Wurmus
2019-08-29import: cran: Add support for git repositories....* guix/import/cran.scm (vcs-file?): New procedure. (download): Support downloading from git. (fetch-description): Add a clause for the 'git repository type. (files-match-pattern?): New procedure. (tarball-files-match-pattern?): Implement in terms of FILES-MATCH-PATTERN?. (directory-needs-fortran?, directory-needs-zlib?, directory-needs-pkg-config?): New procedures. (needs-fortran?, needs-zlib?, needs-pkg-config?): Rename these procedures... (tarball-needs-fortran?, tarball-needs-zlib?, tarball-needs-pkg-config?): ...to this, and use them. (file-hash): New procedure. (description->package): Handle the 'git repository type. * guix/import/utils.scm (package->definition): Handle package expression inside of a let. * guix/scripts/import.scm (guix-import): Handle let expressions. * doc/guix.texi (Invoking guix import): Document it. Ricardo Wurmus
2019-08-27import: github: 'github-package?' uses 'package-upstream-name'....* guix/import/github.scm (updated-github-url): Use 'package-upstream-name' instead of 'package-name'. This allows 'github-package?' to match more packages, given an appropriate upstream name. Ludovic Courtès
2019-08-22Revert "import: utils: Add hash-ref*."...This reverts commit 8a3b11d1eb21e54b4f3a3cbceffed8ce2c11512e. Mark H Weaver
2019-08-22Revert "import: cpan: Adapt for the change to guile-json version 3."...This reverts commit 01ce7af25add55514f737af48ea6c127bedfde67. Mark H Weaver
2019-08-21import: cpan: Adapt for the change to guile-json version 3....In guile-json version 3, JSON objects are represented as hash tables, rather than alists. * guix/import/cpan.scm (string->license): Change the match expression to match on lists, rather than vectors. (module->dist-name, cpan-source-url, cpan-version): Change assoc-ref to hash-ref. (cpan-module->sexp): Change assoc-ref to hash-ref, and assoc-ref* to hash-ref*. * tests/cpan.scm ("source-url-http", "source-url-https"): Convert the alist to a hash table. Christopher Baines
2019-08-21import: utils: Add hash-ref*....With the change to guile-json version 3, JSON objects are represented as hash tables, rather than alists. The cpan importer uses assoc-ref* on a hash table, so add an equivalent function for hash tables. * guix/import/utils.scm (hash-ref*): New procedure. Christopher Baines
2019-08-17import: gnome: Update for Guile-JSON 3.x....This is a followup to 81c3dc32244a17241d74eea9fa265edfcb326f6d. * guix/import/gnome.scm (jsonish->upstream-source): Use 'assoc-ref' instead of 'hash-ref'. (latest-gnome-release): Match a vector containing an alist, not a hash table. Use 'fold' instead of 'hash-fold' over RELEASES. Ludovic Courtès
2019-08-16import: cran: Support experiment and annotation packages....* guix/import/cran.scm (%bioconductor-packages-list-url): Replace variable... (bioconductor-packages-list-url): ...with this procedure. (bioconductor-packages-list): Accept optional TYPE argument. (latest-bioconductor-package-version): Same. (fetch-description): Determine package type and use it in calls to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI. (description->package): Pass package type to URI helper procedure; include package type in annotation or experiment packages from Bioconducter. Ricardo Wurmus
2019-08-07import: hackage: Update list of ghc-included packages....It turns out the list in the release notes is incomplete. This updates the list from /gnu/store/<hash>-ghc-8.4.3/lib/ghc-8.4.3. * guix/import/hackage.scm (ghc-standard-libraries): Update list. Robert Vollmert
2019-07-25maint: Switch to Guile-JSON 3.x....Guile-JSON 3.x is incompatible with Guile-JSON 1.x, which we relied on until now: it maps JSON dictionaries to alists (instead of hash tables), and JSON arrays to vectors (instead of lists). This commit is about adjusting all the existing code to this new mapping. * m4/guix.m4 (GUIX_CHECK_GUILE_JSON): New macro. * configure.ac: Use it. * doc/guix.texi (Requirements): Mention the Guile-JSON version. * guix/git-download.scm (git-fetch)[guile-json]: Use GUILE-JSON-3. * guix/import/cpan.scm (string->license): Expect vectors instead of lists. (module->dist-name): Use 'json-fetch' instead of 'json-fetch-alist'. (cpan-fetch): Likewise. * guix/import/crate.scm (crate-fetch): Likewise, and call 'vector->list' for DEPS. * guix/import/gem.scm (rubygems-fetch): Likewise. * guix/import/json.scm (json-fetch-alist): Remove. * guix/import/pypi.scm (pypi-fetch): Use 'json-fetch' instead of 'json-fetch-alist'. (latest-source-release, latest-wheel-release): Call 'vector->list' on RELEASES. * guix/import/stackage.scm (stackage-lts-info-fetch): Use 'json-fetch' instead of 'json-fetch-alist'. (lts-package-version): Use 'vector->list'. * guix/import/utils.scm (hash-table->alist): Remove. (alist->package): Pass 'vector->list' on the inputs fields, and default to the empty vector. * guix/scripts/import/json.scm (guix-import-json): Remove call to 'hash-table->alist'. * guix/swh.scm (define-json-reader): Expect pair? or null? instead of hash-table?. [extract-field]: Use 'assoc-ref' instead of 'hash-ref'. (json->branches): Use 'map' instead of 'hash-map->list'. (json->checksums): Likewise. (json->directory-entries, origin-visits): Call 'vector->list' on the result of 'json->scm'. * tests/import-utils.scm ("alist->package with dependencies"): New test. * gnu/installer.scm (build-compiled-file)[builder]: Use GUILE-JSON-3. * gnu/installer.scm (installer-program)[installer-builder]: Likewise. * gnu/installer/locale.scm (iso639->iso639-languages): Use 'assoc-ref' instead of 'hash-ref', and pass vectors through 'vector->list'. (iso3166->iso3166-territories): Likewise. * gnu/system/vm.scm (system-docker-image)[build]: Use GUILE-JSON-3. * guix/docker.scm (manifest, config): Adjust for Guile-JSON 3. * guix/scripts/pack.scm (docker-image)[build]: Use GUILE-JSON-3. * guix/import/github.scm (fetch-releases-or-tags): Update docstring. (latest-released-version): Use 'assoc-ref' instead of 'hash-ref'. Pass the result of 'fetch-releases-or-tags' to 'vector->list'. * guix/import/launchpad.scm (latest-released-version): Likewise. Ludovic Courtès
2019-07-02import: pypi: Preserve package name case when forming pypi-uri....Fixes <https://bugs.gnu.org/33046>. * guix/build-system/python.scm (pypi-uri): Update the host URI to "files.pythonhosted.org". * guix/import/pypi.scm (make-pypi-sexp): Preserve the package name case when the source URL calls for it. Maxim Cournoyer
2019-07-02import: pypi: Include optional test inputs as native-inputs....* guix/import/pypi.scm (maybe-inputs): Add INPUT-TYPE argument, and use it. (test-section?): New predicate. (parse-requires.txt): Collect the optional test inputs, and return them as the second element of the returned list. (parse-wheel-metadata): Likewise. (guess-requirements): Adapt. (make-pypi-sexp): Likewise, and include the test inputs requirements as native inputs in the returned package expression. * tests/pypi.scm (test-requires.txt): Include a test section in the test-requires.txt data. (test-requires.txt-beaker): New variable. ("parse-requires.txt"): Adapt. ("parse-requires.txt - Beaker"): New test. ("parse-wheel-metadata, with extras"): Adapt. ("parse-wheel-metadata, with extras - Jedi"): Adapt. ("pypi->guix-package, no wheel"): Re-indent, and add the expected native-inputs. ("pypi->guix-package, wheels"): Likewise. Maxim Cournoyer
2019-07-02import: pypi: Completely mute the output of the "unzip" command....* guix/import/pypi.scm (guess-requirements): Completely mute the output of the "unzip" command. Maxim Cournoyer
2019-07-02import: pypi: Fix typo in docstring....* guix/import/pypi.scm (guess-requirements): Fix typo. Maxim Cournoyer
2019-07-02import: pypi: Parse wheel METADATA instead of metadata.json....With newer Wheel releases, there is no more metadata.json file; the METADATA file should be used instead (see: https://github.com/pypa/wheel/issues/195). This change updates our PyPI importer so that it uses the latter. * guix/import/pypi.scm (define-module): Remove unnecessary modules and export the PARSE-WHEEL-METADATA procedure. (parse-wheel-metadata): Add procedure. (guess-requirements): Use it. * tests/pypi.scm (test-metadata): Test it. Maxim Cournoyer
2019-07-02import: pypi: Support more types of archives....This change enables the PyPI importer to look for requirements in a source archive of a different type than "tar.gz" or "tar.bz2". Also, scan the source archive to find a requires.txt file. * guix/import/pypi.scm: (guess-requirements)[tarball-directory]: Remove procedure. [guess-requirements-from-source]: Use COMRESSED-FILE? to determine if an archive type is supported, and some file extension logic that chooses either "tar" or "unzip" as the extractor. Search for the requires.txt file in the archive instead of using a static, expected location. (guess-requirements): Rename the TARBALL argument to ARCHIVE, to denote the archive format is no longer bound specifically to the Tar format. (compute-inputs): Likewise. * tests/pypi.scm ("pypi->guix-package, no wheel"): Mock the requires.txt at a non-standard location. ("pypi->guix-package, no usable requirement file."): New test. Maxim Cournoyer
2019-07-02import: pypi: Deduplicate requirements....* guix/import/pypi.scm (parse-requires.txt): Remove potential duplicates. Maxim Cournoyer
2019-07-02import: pypi: Improve parsing of requirement specifications....The previous solution was fragile and could leave unwanted characters in a requirement name, such as '[' or ']'. Partially fixes <https://bugs.gnu.org/33047>. * guix/import/pypi.scm (use-modules): Export SPECIFICATION->REQUIREMENT-NAME (%requirement-name-regexp): New variable. (clean-requirement): Rename to... (specification->requirement-name): this, which now uses %requirement-name-regexp to select the requirement name from the requirement specification. (parse-requires.txt): Adapt. Maxim Cournoyer
2019-07-02import: pypi: Do not parse optional requirements from source....* guix/import/pypi.scm: Export PARSE-REQUIRES.TXT. (clean-requirement): Move procedure to the top level. (guess-requirements): Move the READ-REQUIREMENTS procedure to the top level, and rename it to PARSE-REQUIRES.TXT. Move the CLEAN-REQUIREMENT procedure to the top level. Move the COMMENT? functions inside the PARSE-REQUIRES.TXT procedure. (parse-requires.txt): Add a SECTION-HEADER? predicate, and use it to prevent parsing optional requirements. * tests/pypi.scm (test-requires-with-sections): New variable. ("parse-requires.txt, with sections"): New test. Maxim Cournoyer
2019-07-02import: pypi: Do not consider requirements.txt files....PyPI packages are mandated to have a setup.py file, which contains a listing of the required dependencies. The setuptools/distutils machinery embed metadata in the archives they produce, which contains this information. There is no need nor gain to collect the requirements from a "requirements.txt" file, as it is not the true record of dependencies for PyPI packages and may contain extraneous requirements or not exist at all. * guix/import/pypi.scm (guess-requirements): Update comment. [guess-requirements-from-source]: Do not attempt to parse the file requirements.txt. Streamline logic. * tests/pypi.scm (test-requires.txt): Rename from test-requirements, to hint at the file being tested. ("pypi->guix-package"): Adapt so that the fake package contains a requires.txt file rather than a requirements.txt file. ("pypi->guix-package, wheels"): Likewise. Maxim Cournoyer
2019-06-30guix: import: crate: fix redundant inputs list nesting...* guix/import/crate.scm (maybe-cargo-inputs): Remove one level of lists. * guix/import/crate.scm (maybe-cargo-development-inputs): Same. * tests/crate.scm: (crate->guix-package)[package]<#:arguments>: Remove one level of list nesting. Ivan Petkov
2019-06-13import: hackage: Handle Hackage revisions....Hackage packages can have metadata revisions (Cabal file only) that are not reflected in the source archive. The Haskell build system has support for this, but until now the Hackage importer would create a package based on the revised Cabal file which would then build using the old Cabal file. Fixes <https://bugs.gnu.org/35750>. * guix/import/cabal.scm (<cabal-package>): Add 'revision' field. (eval-cabal): Parse 'x-revision:' property. * guix/import/hackage.scm (read-cabal-and-hash): New procedure. (hackage-fetch-and-hash): New procedure. (hackage-fetch): Rewrite using 'hackage-fetch-and-hash'. (hackage-module->sexp): Add 'cabal-hash' argument and use it to populate the '#:cabal-revision' argument. (hackage->guix-package): Use the new '-and-hash' functions to get the hash of the Cabal file and pass it to 'hackage-module->sexp'. * guix/tests/hackage.scm: Test import of Cabal file revision. Signed-off-by: Timothy Sample <samplet@ngyro.com> Robert Vollmert
2019-06-11import: crate: Define dependencies as arguments....* guix/import/crate.scm: (crate-fetch)[input-crates]: Rename to dev-crates. [native-input-crates]: Rename to dev-dep-crates. [inputs]: Rename to cargo-inputs. [native-inputs]: Rename to cargo-development-inputs. (maybe-cargo-inputs, maybe-cargo-development-inputs, maybe-arguments): Add them. (make-crate-sexp)[inputs]: Rename to cargo-inputs. [native-inputs]: Rename to cargo-development-inputs. [maybe-native-inputs, maybe-inputs]: Replace with maybe-arguments. * guix/import/utils.scm: (package-names->package-inputs): Make public. Add docstring. * tests/crate.scm (crate->guix-package): Update the match pattern. Signed-off-by: Chris Marusich <cmmarusich@gmail.com> Ivan Petkov
2019-06-07import: utils: 'specs->package-lists' correctly matches "out"....* guix/import/utils.scm (specs->package-lists): Match "out", not ("out"). Ludovic Courtès
2019-06-07import: print: Honor the outputs of inputs (!)....Fixes <http://bugs.gnu.org/35893>. Reported by Jesse Gibbons <jgibbons2357@gmail.com>. * guix/import/print.scm (package->code)[package-lists->code]: Preserve OUT in the result. * tests/print.scm (define-with-source): New macro. (pkg): Use it. (pkg-source): New variable. (pkg-with-inputs, pkg-with-inputs-source): New variables. ("simple package"): Refer to 'pkg-source'. ("package with inputs"): New test. Ludovic Courtès
2019-06-03guix: import: simplify recursive import...This simplifies the logic of recursive-import, intending no major functional changes. The package import function is no longer called twice per package. Failed imports now make it to the package stream as '() instead of #f. * guix/import/utils.scm (recursive-import): Simplify. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Robert Vollmert
2019-06-02import: hackage: Parse braced properties....This adds partial support for Cabal properties that use curly braces instead of the layout rule. See for example https://hackage.haskell.org/package/cassava/ * guix/import/cabal.scm (read-braced-value): New procedure. (is-property): Remove. (is-layout-property, is-braced-property): New variables. (lex-property): Rename to... (lex-layout-property): ... this. (lex-braced-property, lex-property): New procedures. (lex-token): Add call to 'lex-property'. * guix/tests/hackage.scm: Test braced description import. * tests/hackage.scm (test-cabal-multiline-desc): Rename to... (test-cabal-multiline-layout): ... this. ("hackage->guix-package test multiline desc"): Rename to... ("hackage->guix-package test multiline desc (layout)"): ... this. (test-cabal-multiline-braced): New variable. ("hackage->guix-package test multiline desc (braced)"): New test. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Robert Vollmert
2019-06-01import: hackage: Update list of ghc-included packages....Update the list of excepted dependencies for current ghc-8.4, based on the release notes at https://downloads.haskell.org/~ghc/8.4.3/docs/html/users_guide/8.4.3-notes.html Particularly, this adds `text` to the list, which is a dependency of `parsec` which was already on the list before, causing build failures with updated versions of the `text` package. * guix/import/hackage.scm (ghc-standard-libraries): Update list. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Robert Vollmert
2019-05-28import: cran: Ignore invalid packages from the system requirements....* guix/import/cran.scm (description->package): Filter invalid packages from the list of system requirements. Ricardo Wurmus
2019-05-26import: hackage: Fix Cabal test....* guix/import/hackage.scm (hackage->guix-package): Remove call to 'memoize'. (hackage->guix-package/m): New procedure. (hackage-recursive-import): Use it. * tests/hackage.scm ("hackage->guix-package test 6"): Adjust. Co-authored-by: Robert Vollmert <rob@vllmrt.net> Ludovic Courtès
2019-05-26import: hackage: Recognize "BSD-3-Clause" and "PublicDomain"....* guix/import/hackage.scm (string->license): Add two licenses. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Robert Vollmert
2019-05-23import: cran: Ignore invalid packages....* guix/import/cran.scm (invalid-packages): New variable. (description->package): Use it. Ricardo Wurmus
2019-05-15import: github: Sort releases before picking the latest one....* guix/import/github.scm (latest-released-version): Sort releases before picking the first one as the latest. Arun Isaac
2019-05-15import: github: Improve readability....* guix/import/github.scm (latest-released-version)[release->version]: Separate out release->version as a new function. Arun Isaac
2019-05-06guix: Update to Bioconductor 3.9....* guix/build-system/r.scm (bioconductor-uri): Use 3.9 archive URL. * guix/import/cran.scm (%bioconductor-version): Update to 3.9. Ricardo Wurmus
2019-04-10import: opam: Use dune-build-system when possible....* guix/import/opam.scm (opam->guix-package): Detect when dune can be used. Julien Lepiller
2019-04-10import: opam: Add more patterns to opam file parser....* guix/import/opam.scm: Add more patterns to peg parser. (choice-pat choice condition-not condition-paren): New patterns. (ground-value condition-content condition-var): Update patterns. Julien Lepiller