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2023-11-05scripts: edit: Fix relative file-name with 'load-path' option....* guix/scripts/edit.scm (search-path*): Return 'file' if exists when 'search-path' fails. Change-Id: I891d63d0d28577a7d1732fc59435828ecc0a5c5a Simon Tournier
2023-11-03guix: Upgrade to Bioconductor 3.18....* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.18. * guix/import/cran.scm (%bioconductor-version): Same. Change-Id: Ic3fc2e6ab6b5f6f6e55662f81baee67391158c5b Ricardo Wurmus
2023-10-28build-system/go: Use gccgo when go isn't supported....* guix/build-system/go.scm (default-gccgo): New variable. (lower): Only use default-go when it is supported. Change-Id: I30564d97703344df582accaf741f4fcd159b6be1 Efraim Flashner
2023-10-28environment: Fix typo in error messages....* guix/scripts/environment.scm (guix-environment*): Fix typo in error messages. Change-Id: I0b8669cb43267d0456a70f3b157514a6bcc725e8 Ludovic Courtès
2023-10-28environment: Parameterize ‘%graft?’ early on....Previously, ‘%graft?’ would be parameterized after ‘package-derivation’ had been called for ‘%guile-for-build’, which is too late. * guix/scripts/environment.scm (guix-environment*)[with-store/maybe]: Parameterize ‘%graft?’. Remove ‘%graft?’ parameterization from body. Change-Id: I65ef4a8c5f27e19a49196005871e5f7057fabaec Ludovic Courtès
2023-10-28profiles: Hooks honor the #:system parameter of ‘profile-derivation’....Fixes <https://issues.guix.gnu.org/65225>. * guix/profiles.scm (info-dir-file, package-cache-file) (info-dir-file, ghc-package-cache-file, ca-certificate-bundle) (emacs-subdirs, gdk-pixbuf-loaders-cache-file, glib-schemas) (gtk-icon-themes, gtk-im-modules, linux-module-database) (xdg-desktop-database, xdg-mime-database, fonts-dir-file) (manual-database, manual-database/optional): Add optional #:system parameter and pass it to ‘gexp->derivation’. (profile-derivation): Pass HOOK a second parameter, SYSTEM. * gnu/bootloader.scm (efi-bootloader-profile)[efi-bootloader-profile-hook]: Add optional #:system parameter and pass it to ‘gexp->derivation’. * guix/channels.scm (package-cache-file): Likewise. * tests/profiles.scm ("profile-derivation, #:system, and hooks"): New test. Reported-by: Tobias Geerinckx-Rice <me@tobias.gr> Ludovic Courtès
2023-10-28packages: Add ‘system’ parameter for ‘set-guile-for-build’....* guix/packages.scm (set-guile-for-build): Add ‘system’ parameter. Ludovic Courtès
2023-10-28environment: Honor ‘-s’ for guile-for-build....Partly fixes <https://issues.guix.gnu.org/65225>. * guix/scripts/environment.scm (guix-environment*): Pass SYSTEM to ‘package-derivation’ when defining ‘%guile-for-build’. Reported-by: Simon Tournier <zimon.toutoune@gmail.com> Change-Id: I9d883f1e61fac72754fdc9dee9b7c8a3dea32add Ludovic Courtès
2023-10-28grafts: Fix corner case involving multiple-output derivations....Fixes a bug that would occur with references to two outputs of the same derivation, with one of them referring to the other one. For example, the references of libreoffice include both mariadb:dev and mariadb:lib; additionally, mariadb:dev refers to mariadb:lib. In this case, the glibc graft would not be applied on one of the mariadb paths, and both the grafted and ungrafted glibc would end up in the closure of libreoffice. Fixes <https://issues.guix.gnu.org/66662>. * guix/grafts.scm (non-self-references): Simplify and include references to outputs of DRV other than OUTPUTS. (reference-origins): Simplify and possibly return outputs of DRV itself. (cumulative-grafts)[graft-origin?]: Add OUTPUT parameter and honor it. [dependency-grafts]: Adjust accordingly. * tests/grafts.scm ("graft-derivation, multiple outputs need to be replaced"): New test. Change-Id: Iac2005024ab7049037537b3af55298696ec90e3c Ludovic Courtès
2023-10-26utils: Add 'strip-for-target'....* guix/utils.scm (strip-for-target): New procedure. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Zheng Junjie
2023-10-23syscalls: Consistently use existing linux? definition....Instead of duplicating this existing logic across the source file. This will make it easier to add additional linux targets (e.g. linux-musl) in the future. * guix/build/syscalls.scm (readdir*, write-socket-address!) (read-socket-address): Use linux? constant. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I833c1d1630dcb8319584de1ea918cb22696f0058 Sören Tempel
2023-10-23syscalls: Add support for musl libc....This commit allows using Guix on a foreign distro which uses musl libc, for example, Alpine Linux. Usage of musl libc is detected via a new musl-libc? variable using the Guile %host-type. Using the new musl-libc? variable, we can now implement musl-specific quirks. The two compatibility problems I encountered in this regard are that musl dose not export a readdir64 and statfs64 symbol. On musl, these two functions are implemented as CPP macros that expand to readdir/statfs. To workaround that, a case-distinction was added. The existing linux? variable has been modified to return true if the %host-system contains "linux-" in order to ensure it is true for both linux-gnu as well as linux-musl host systems. The patch has been tested on Alpine Linux and is already used for the downstream Guix package shipped in Alpine Linux's package repository. * guix/build/syscalls.scm (musl-libc?): New variable. (linux?): Truth value on any linux system. (statfs, readdir-procedure): Support musl libc. Signed-off-by: Sören Tempel <soeren@soeren-tempel.net> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: Icc4101a062381240f977f4550344bde696513c52 Sören Tempel
2023-10-23build-system/dub: Remove dependency on (guix build syscalls)....The (guix build syscalls) module was unused. * guix/build-system/dub.scm (%dub-build-system-modules): Remove (guix build syscalls). Ludovic Courtès
2023-10-23build-system/android-ndk: Remove dependency on (guix build syscalls)....The (guix build syscalls) module was unused. * guix/build-system/android-ndk.scm (%android-ndk-build-system-modules): Remove (guix build syscalls). Ludovic Courtès
2023-10-23build-system/ant: Remove dependency on (guix build syscalls)....The module has been unused since a6343af22161b21ddbc4143a2b6a60d1ee860eb0. * guix/build-system/ant.scm (%ant-build-system-modules): Remove (guix build syscalls). Ludovic Courtès
2023-10-22guix: import: Don't import yanked rust crates....* guix/import/crate.scm (<crate-version>): Add yanked? field. (crate->guix-package)[find-crate-version]: Remove versions which have been yanked. * tests/crate.scm: Adjust tests for new yanked? field. Efraim Flashner
2023-10-21Merge remote-tracking branch 'origin/rust-team'Efraim Flashner
2023-10-21build-system: Add zig-build-system....* guix/build-system/zig.scm: New file. * guix/build/zig-build-system.scm: New file. * Makefile.am: Add them. * doc/guix.texi: Document it. * etc/snippets/yas/scheme-mode/guix-package (build-system): Add zig-build-system. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ekaitz Zarraga
2023-10-18Revert "build: cargo-build-system: Disable tests by default."...This reverts commit 37667443074a6de29f7665868f102111d62f0af9. This change needs more discussion. Efraim Flashner
2023-10-18build: cargo-build-system: Find more pregenerated files....* guix/build/cargo-build-system.scm (check-for-pregenerated-files): Also search for MacOS dynamic libraries. Efraim Flashner
2023-10-18build: cargo-build-system: Disable tests by default....* guix/build-system/cargo.scm (cargo-build): Disable tests by default. * gnu/packages/admin.scm (greetd, wlgreet, du-dust), * gnu/packages/bioinformatics.scm (circtools, python-gseapy), * gnu/packages/crypto.scm (rust-minisign, b3sum), * gnu/packages/gnome.scm (librsvg), * gnu/packages/python-crypto.scm (python-blake3, python-cryptography-rust), * gnu/packages/python-xyz.scm (python-orjson), * gnu/packages/rust-apps.scm (agate, alfis, bat, diffr, drill, dutree, exa, fd, hexyl, hyperfine, i3status-rust, just, maturin, ripgrep, rot8, rust-swc, rust-cargo-edit, git-interactive-rebase-tool, rust-cbindgen, rust-cbindgen-0.24, rust-cbindgen-0.19, sniffglue, tectonic, treefmt, hex, tokei, vivid, watchexec, rbw, rust-analyzer, rust-cargo-c, rtss, skim, skim-0.7, svd2rust, swayhide, tealdeer, git-absorb, zoxide, htmlq), * gnu/packages/sequoia.scm (sequoia-sqv), * gnu/packages/syndication.scm (newsboat), * gnu/packages/terminals.scm (alacritty), * gnu/packages/text-editors.scm (kak-lsp, parinfer-rust), * gnu/packages/tree-sitter.scm (tree-sitter-cli), * gnu/packages/video.scm (rav1e), * gnu/packages/web.scm (monolith, castor) [arguments]: Enable tests. Efraim Flashner
2023-10-18build: cargo-build-system: Strip enough prefix in package....* guix/build/cargo-build-system.scm (package): When using the source as the packaged crate also strip the 'rust-' prefix. Efraim Flashner
2023-10-18build: cargo-build-system: Reset timestamps in crates....This fixes reproducibility in rust crates from the package phase, see <https://issues.guix.gnu.org/50015>. * guix/build/cargo-build-system.scm (package): After running 'cargo package' on the source unpack the tarball, reset the timestamps and repack it. Efraim Flashner
2023-10-18build: cargo-build-system: Check for pregenerated files....* guix/build/cargo-build-system.scm (check-for-pregenerated-files): New procedure. (%standard-phases): Add 'check-for-pregenerated-files phase between 'unpack and 'unpack-rust-crates. Efraim Flashner
2023-10-17guix: import: opam: Handle list of licenses....Fixes <https://issues.guix.gnu.org/issue/66461>. Reported by Simon Tournier <zimon.toutoune@gmail.com>. * guix/import/opam.scm (opam->guix-package): Handle lists of licenses. Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com> Josselin Poiret
2023-10-17scripts: weather: Handle EPIPE errors when displaying help....* guix/scripts/weather.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: upgrade: Handle EPIPE errors when displaying help....* guix/scripts/upgrade.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: time-machine: Handle EPIPE errors when displaying help....* guix/scripts/time-machine.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: substitute: Handle EPIPE errors when displaying help....* guix/scripts/substitute.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: system: Handle EPIPE errors when displaying help....* guix/scripts/system.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: style: Handle EPIPE errors when displaying help....* guix/scripts/style.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: size: Handle EPIPE errors when displaying help....* guix/scripts/size.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: show: Handle EPIPE errors when displaying help....* guix/scripts/show.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: shell: Handle EPIPE errors when displaying help....* guix/scripts/shell.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: search: Handle EPIPE errors when displaying help....* guix/scripts/search.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: repl: Handle EPIPE errors when displaying help....* guix/scripts/repl.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: remove: Handle EPIPE errors when displaying help....* guix/scripts/remove.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: refresh: Handle EPIPE errors when displaying help....* guix/scripts/refresh.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: pull: Handle EPIPE errors when displaying help....Reported by Mathieu Othacehe <othacehe@gnu.org>. * guix/scripts/pull.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: publish: Handle EPIPE errors when displaying help....* guix/scripts/publish.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: processes: Handle EPIPE errors when displaying help....* guix/scripts/processes.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: package: Handle EPIPE errors when displaying help....Reported by Mathieu Othacehe <othacehe@gnu.org>. * guix/scripts/package.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: pack: Handle EPIPE errors when displaying help....* guix/scripts/pack.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: offload: Handle EPIPE errors when displaying help....* guix/scripts/offload.scm (guix-offload): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: locate: Handle EPIPE errors when displaying help....* guix/scripts/locate.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: lint: Handle EPIPE errors when displaying help....* guix/scripts/lint.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: install: Handle EPIPE errors when displaying help....* guix/scripts/install.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: import: Handle EPIPE errors when displaying help....* guix/scripts/import.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: home: Handle EPIPE errors when displaying help....* guix/scripts/home.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier
2023-10-17scripts: hash: Handle EPIPE errors when displaying help....* guix/scripts/hash.scm (%options): Handle EPIPE errors when displaying help. Simon Tournier