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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2018 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages datamash)
#:use-module (guix packages)
#:use-module (guix licenses)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix gexp)
#:use-module (guix utils)
#:use-module (gnu packages)
#:use-module (gnu packages base)
#:use-module (gnu packages gawk)
#:use-module (gnu packages perl)
#:use-module (gnu packages python)
#:use-module (gnu packages python-xyz))
(define-public datamash
(package
(name "datamash")
(version "1.7")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://gnu/datamash/datamash-"
version ".tar.gz"))
(sha256
(base32
"1cxdlhgz3wzjqlq8bgwad93fgqymk2abbldfzw1ffnhcp4mmjjjp"))))
(native-inputs
(list which ;for tests
perl)) ;for help2man
(build-system gnu-build-system)
(home-page "https://www.gnu.org/software/datamash/")
(synopsis "Scriptable statistics and data calculation")
(description
"Perform basic numeric, textual and statistical operations on plain text
files. Designed to work within standard pipelines without additional code.")
(license gpl3+)))
(define-public vnlog
(package
(name "vnlog")
(version "1.32")
(home-page "https://github.com/dkogan/vnlog")
(source (origin
(method git-fetch)
(uri (git-reference
(url home-page)
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"1g4insm6gkw3c82fq8q9swkdha3cncbz1nib15yg9b2s4yl123hm"))))
(build-system gnu-build-system)
(native-inputs
(list python-numpy)) ;for tests
(inputs
(list mawk
perl
perl-ipc-run
perl-list-moreutils
perl-string-shellquote
perl-text-diff
perl-text-table
python-wrapper))
(arguments
(list #:make-flags
#~(list (string-append "CC=" #$(cc-for-target))
(string-append "DESTDIR=" #$output)
"USRLIB=lib"
"MANDIR=share/man"
(string-append "PY3_MODULE_PATH=lib/python"
#$(version-major+minor
(package-version
(this-package-input "python-wrapper")))
"/site-packages")
;; Do not install the Python 2 modules.
"DIST_PY2_MODULES=")
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'adjust-Makefile
(lambda _
(substitute* "GNUmakefile"
;; Install Perl modules to the usual location.
(("/usr/share/perl5")
(string-append "/lib/perl5/site_perl/"
#$(package-version
(this-package-input "perl"))))
;; Do not add a '/usr' suffix to DESTDIR.
(("\\$\\(DESTDIR\\)/usr")
"$(DESTDIR)")
;; Do not strip RUNPATH from the installed C library.
((".*find.*chrpath.*")
""))))
(add-after 'unpack 'use-absolute-mawk
(lambda* (#:key inputs #:allow-other-keys)
(let ((mawk (search-input-file inputs "bin/mawk")))
(substitute* '("vnl-filter" "lib/Vnlog/Util.pm")
(("'mawk'")
(string-append "'" mawk "'"))))))
(delete 'configure)
(add-before 'check 'disable-python2-test
(lambda _
(delete-file "test/test_python2_parser.sh")
(substitute* "GNUmakefile"
((".*test/test_python2_parser\\.sh\\.RUN.*")
""))))
(add-after 'install 'wrap
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(PERL5LIB (string-append
out "/lib/perl5/site_perl/"
#$(package-version
(this-package-input "perl"))
":" (getenv "PERL5LIB"))))
(for-each (lambda (script)
(wrap-program script
`("PERL5LIB" ":" prefix (,PERL5LIB))))
(find-files (string-append out "/bin"))))))
(add-after 'wrap 'check-wrapped-executables
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
;; Assert that the installed Perl scripts can find
;; their dependencies even when PERL5LIB is unset.
(unsetenv "PERL5LIB")
(for-each (lambda (script)
(invoke/quiet script "--help"))
(find-files (string-append out "/bin")
"^vnl-[[:lower:]]+$"))))))))
(synopsis "Process labelled tabular ASCII data on the command line")
(description
"Vnlog (pronounced @dfn{vanillog}) is a toolkit for manipulating
tabular ASCII data with labelled fields using regular command-line tools.")
(license lgpl2.1+)))
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