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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages orange)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix build-system python)
#:use-module (gnu packages)
#:use-module (gnu packages freedesktop)
#:use-module (gnu packages graph)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt))
(define-public python-orange-canvas-core
(package
(name "python-orange-canvas-core")
(version "0.1.19")
(source
(origin
(method url-fetch)
(uri (pypi-uri "orange-canvas-core" version))
(sha256
(base32 "03wav2msfm32y8zwq69v1v6qyh1ld76xla2z60avf49yhbwjgwal"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'check 'check-setup
(lambda _
;; This test fails with: RuntimeError: Event loop is closed.
(substitute* "orangecanvas/application/tests/test_mainwindow.py"
(("test_help_requests") "_test_help_requests"))
(setenv "HOME" "/tmp")
(setenv "QT_QPA_PLATFORM" "offscreen")
#t)))))
(propagated-inputs
`(("python-anyqt" ,python-anyqt)
("python-cachecontrol" ,python-cachecontrol)
("python-commonmark" ,python-commonmark)
("python-dictdiffer" ,python-dictdiffer)
("python-docutils" ,python-docutils)
("python-pyqt" ,python-pyqt)
("python-qasync" ,python-qasync)
("python-requests" ,python-requests)))
(home-page "https://github.com/biolab/orange-canvas-core")
(synopsis "Core component of Orange Canvas")
(description
"Orange Canvas Core is a framework for building graphical user interfaces
for editing workflows. It is a component used to build the Orange Canvas
data-mining application.")
(license license:gpl3)))
(define-public python-orange-widget-base
(package
(name "python-orange-widget-base")
(version "4.12.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "orange-widget-base" version))
(sha256
(base32 "13sy3s8rdqs3i3ghixljpqvnfz81qmbb0kqlasw39zvf39qc22kz"))))
(build-system python-build-system)
(arguments
`(;; unittest fails to load one test, all other tests are passing:
;; AttributeError: module 'orangewidget' has no attribute 'version'.
#:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'check 'check-setup
(lambda _
(setenv "HOME" "/tmp")
(setenv "QT_QPA_PLATFORM" "offscreen")
#t)))))
(propagated-inputs
`(("python-anyqt" ,python-anyqt)
("python-matplotlib" ,python-matplotlib)
("python-orange-canvas-core"
,python-orange-canvas-core)
("python-pyqtgraph" ,python-pyqtgraph)))
(home-page "https://github.com/biolab/orange-widget-base")
(synopsis "Base Widget for Orange Canvas")
(description
"Orange Widget Base provides a base widget component for a interactive
GUI based workflow. It is primarily used in the Orange framework.")
(license license:gpl3+)))
(define-public orange
(package
(name "orange")
(version "3.28.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "Orange3" version))
(sha256
(base32 "1ac4xjjkx06z10hl7k0zh1z3qhkl5vng15l9jkpkmck9spinbzil"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'preparations
(lambda _
;; Delete test that opens an outgoing connection.
(delete-file "Orange/tests/test_url_reader.py")
;; This is a binary data file and it breaks runpath validation.
(delete-file "Orange/tests/datasets/binary-blob.tab")
;; Skip the test which uses that binary file.
(substitute* "Orange/tests/test_txt_reader.py"
(("test_read_nonutf8_encoding") "_test_read_nonutf8_encoding"))
;; We use a correct version of PyQtWebEngine, but the build scripts
;; consider it incorrect anyways. Remove the constraint entirely to
;; work around this bug.
(substitute* "requirements-gui.txt" (("PyQtWebEngine>=5.12") ""))
#t))
(add-before 'check 'set-HOME
;; Tests need a writable home.
(lambda _ (setenv "HOME" "/tmp") #t))
(add-after 'install 'wrap-executable
;; Ensure that icons are found at runtime.
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(wrap-program (string-append out "/bin/orange-canvas")
`("QT_PLUGIN_PATH" prefix
,(list (string-append (assoc-ref inputs "qtsvg")
"/lib/qt5/plugins/")))))
#t)))))
(native-inputs
`(("python-cython" ,python-cython)))
(inputs
`(("python-anyqt" ,python-anyqt)
("python-baycomp" ,python-baycomp)
("python-bottleneck" ,python-bottleneck)
("python-chardet" ,python-chardet)
("python-httpx" ,python-httpx)
("python-joblib" ,python-joblib)
("python-keyring" ,python-keyring)
("python-keyrings.alt" ,python-keyrings.alt)
("python-louvain" ,python-louvain)
("python-matplotlib" ,python-matplotlib)
("python-networkx" ,python-networkx)
("python-numpy" ,python-numpy)
("python-openpyxl" ,python-openpyxl)
("python-opentsne" ,python-opentsne)
("python-orange-canvas-core"
,python-orange-canvas-core)
("python-orange-widget-base"
,python-orange-widget-base)
("python-pandas" ,python-pandas)
("python-pyqt" ,python-pyqt)
("python-pyqtgraph" ,python-pyqtgraph)
("python-pyqtwebengine" ,python-pyqtwebengine)
("python-pyyaml" ,python-pyyaml)
("python-requests" ,python-requests)
("python-scikit-learn" ,python-scikit-learn)
("python-scipy" ,python-scipy)
("python-serverfiles" ,python-serverfiles)
("python-xlrd" ,python-xlrd)
("python-xlsxwriter" ,python-xlsxwriter)
("qtbase" ,qtbase-5)
("qtsvg" ,qtsvg)
("xdg-utils" ,xdg-utils)))
(home-page "https://orangedatamining.com/")
(synopsis "Component-based data mining framework")
(description
"Orange is a component-based, graphical framework for machine learning,
data analysis, data mining and data visualization.")
(license license:gpl3+)))
(define-public python-serverfiles
(package
(name "python-serverfiles")
(version "0.3.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "serverfiles" version))
(sha256
(base32 "1qgbzgnaxj4wsp2rdas53qxsh0j7xpibq25w6lviwyaqwwrgq42y"))))
(build-system python-build-system)
(propagated-inputs
`(("python-requests" ,python-requests)))
(home-page "https://github.com/biolab/serverfiles")
(synopsis "Utility to access files on a HTTP server and store them locally")
(description
"This package provides an utility that accesses files on a HTTP server
and stores them locally for reuse. It is primarily used by the Orange
framework.")
(license license:gpl3+)))
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