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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-01-12 08:52:54 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-16 12:44:37 +0100 |
| commit | 579b35ddd1aad7e008b97e98f903d628be668dd2 (patch) | |
| tree | dfb476d7007edf188a7d1c5be4073f0167c72a01 /gnu/packages/bioinformatics.scm | |
| parent | ae42b55d859d9df6e6ae6c7cc0688d083503c291 (diff) | |
gnu: python-bbknn: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.6.0.
[arguments]: Remove phase 'do-not-fail-to-find-sklearn.
[propagated-inputs]: Add python-pynndescent.
[native-inputs]: Add python-flit-core.
Change-Id: I5fca2d6ca52e54eb7650b3bb24a34a0aa47b1782
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 22 |
1 files changed, 10 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4eef211b86..09a4efeadf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16571,36 +16571,34 @@ million cells.") (define-public python-bbknn (package (name "python-bbknn") - (version "1.5.1") + (version "1.6.0") (source (origin (method url-fetch) (uri (pypi-uri "bbknn" version)) (sha256 (base32 - "0q11xdmjr2kf6f179a6kjizj3lllfrq743gslgw67qyzimvrrnhn")))) - (build-system python-build-system) + "06q43cpi7wi6f2d2jqs8f9rbd94pg1hh7978gm92mi9gvzbaj08w")))) + (build-system pyproject-build-system) (arguments - `(#:tests? #f ; no tests are included - #:phases - (modify-phases %standard-phases + (list + #:tests? #f ;no tests are included + #:phases + '(modify-phases %standard-phases ;; Numba needs a writable dir to cache functions. (add-before 'check 'set-numba-cache-dir (lambda _ - (setenv "NUMBA_CACHE_DIR" "/tmp"))) - (add-after 'unpack 'do-not-fail-to-find-sklearn - (lambda _ - ;; XXX: I have no idea why it cannot seem to find sklearn. - (substitute* "setup.py" - (("'sklearn'") ""))))))) + (setenv "NUMBA_CACHE_DIR" "/tmp")))))) (propagated-inputs (list python-annoy python-cython python-numpy python-pandas + python-pynndescent python-scikit-learn python-scipy python-umap-learn)) + (native-inputs (list python-flit-core)) (home-page "https://github.com/Teichlab/bbknn") (synopsis "Batch balanced KNN") (description "BBKNN is a batch effect removal tool that can be directly |