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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:26:54 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:26:54 +0100 |
| commit | c3adc8305465318e3d83f2a881ab54076e288a0a (patch) | |
| tree | 0192d7b67b08ef28f5cf9ce78bd8c76f2a11744c /gnu/packages/bioinformatics.scm | |
| parent | 5acb9052cf7f57aecebfa1e719022efad52322b0 (diff) | |
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 0 insertions, 32 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 51bb3bb9b7..ef65dd9361 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8105,38 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).") (license license:lgpl2.0+))) -(define-public r-bsgenome-mmusculus-ucsc-mm10 - (package - (name "r-bsgenome-mmusculus-ucsc-mm10") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Mmusculus.UCSC.mm10_" - version ".tar.gz")) - (sha256 - (base32 - "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf")))) - (properties - `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/") - (synopsis "Full genome sequences for Mouse") - (description - "This package provides full genome sequences for Mus -musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored -in Biostrings objects.") - (license license:artistic2.0))) - (define-public r-txdb-mmusculus-ucsc-mm10-knowngene (package (name "r-txdb-mmusculus-ucsc-mm10-knowngene") |