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authorRicardo Wurmus <rekado@elephly.net>2021-10-21 10:57:54 +0000
committerRicardo Wurmus <rekado@elephly.net>2021-10-21 10:59:16 +0000
commitac327cc7fcd3fdc8dc29db225df3b25a3d54af38 (patch)
tree3d4c12d99236f0101437004dadddd07dd970cd1d /gnu
parenta6ad219dd6d0796365c07303f6947e840beedacf (diff)
gnu: Add r-fcscan.
* gnu/packages/bioconductor.scm (r-fcscan): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4cbffac000..90a0e1f288 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7331,6 +7331,37 @@ specified group of genes for a pathway has a coordinated association with a
phenotype of interest.")
(license license:gpl2)))
+(define-public r-fcscan
+ (package
+ (name "r-fcscan")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "fcScan" version))
+ (sha256
+ (base32 "10fcz741dr3wbb9f63qywlrays4cnvfnsm6yw4bmkrwk6ccijg8h"))))
+ (properties `((upstream-name . "fcScan")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-plyr" ,r-plyr)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/fcScan")
+ (synopsis "Detect clusters of coordinates with user defined options")
+ (description
+ "This package is used to detect combination of genomic coordinates
+falling within a user defined window size along with user defined overlap
+between identified neighboring clusters. It can be used for genomic data
+where the clusters are built on a specific chromosome or specific strand.
+Clustering can be performed with a \"greedy\" option allowing thus the
+presence of additional sites within the allowed window size.")
+ (license license:artistic2.0)))
+
(define-public r-fgsea
(package
(name "r-fgsea")