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path: root/gnu/packages/bioconductor.scm
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2022-08-31gnu: Add r-milor.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-milor): New variable.
2022-08-29gnu: r-keggrest: Update to 1.36.3.Efraim Flashner
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.3.
2022-08-28gnu: r-genomeinfodb: Update to 1.32.3.Efraim Flashner
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.3.
2022-08-28gnu: r-iranges: Update to 2.30.1.Efraim Flashner
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.30.1.
2022-08-25gnu: Add r-scry.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scry): New variable.
2022-08-23gnu: Add r-organism-dplyr.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-organism-dplyr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-08-23gnu: Add r-bladderbatch.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bladderbatch): New variable.
2022-08-23gnu: Add r-pcaexplorer.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-pcaexplorer): New variable.
2022-08-23gnu: Add r-parathyroidse.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
2022-08-14gnu: Remove ‘open source’ from package descriptions.Tobias Geerinckx-Rice
Also do some (trivial) editing where appropriate. * gnu/packages/bioconductor.scm (r-anaquin, r-rcppnumerical) [description]: Remove superfluous ‘open source’. * gnu/packages/debian.scm (apt-mirror)[description]: Likewise. Add @acronym{}. Drop obscure Ubuntu for famous Trisquel. Reorder. * gnu/packages/documentation.scm (scrollkeeper)[description]: Remove superfluous ‘open systems’. Keep ‘Open Source’ in standard name. * gnu/packages/engineering.scm (freecad, cura-engine)[description]: Remove superfluous ‘open source’ and excessive puffery. * gnu/packages/firmware.scm (make-opensbi-package) [synopsis]: Remove ‘Open Source’. Use @acronym{}. [description]: Fix first sentence to follow guidelines. Use @acronym{}. * gnu/packages/game-development.scm (ioquake3, recastnavigation): [description]: Remove ‘open source’. * gnu/packages/graphics.scm (skia)[description]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-s-sysdeps)[description]: Likewise. * gnu/packages/machine-learning.scm (onnx)[description]: Likewise. Use @acronym{}. * gnu/packages/ocaml.scm (ocaml-cudf)[description]: Likewise.
2022-08-14gnu: r-bgx: Build without CPU tuning.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/57210>. * gnu/packages/bioconductor.scm (r-bgx)[arguments]: Add phase 'do-not-tune-cflags-for-reproducibility to patch configure.ac. [inputs]: Add boost. [native-inputs]: Add autoconf and automake.
2022-08-14gnu: r-lpsymphony: Build reproducibly.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lpsymphony)[arguments]: Add build phase 'make-build-order-reproducible.
2022-08-10gnu: r-activepathways: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.1.
2022-08-09gnu: Add r-ciara.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ciara): New variable.
2022-08-05gnu: Add r-biomartr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomartr): New variable.
2022-08-01gnu: Add r-infercnv.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-infercnv): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-08-01gnu: Add r-muscat.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-muscat): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-08-01gnu: Add comma after “i.e.” in descriptions.Paul A. Patience
* gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after “i.e.”. * gnu/packages/code.scm (xenon)[description]: Same. * gnu/packages/cran.scm (r-crosstalk)[description]: Same. * gnu/packages/python-xyz.scm (python-radon)[description]: Same. * gnu/packages/statistics.scm (r-logspline)[description]: Same. * gnu/packages/suckless.scm (tabbed)[description]: Same. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-15gnu: r-affycompatible: Build reproducibly.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycompatible)[arguments]: Sort XML elements before generating R code from them.
2022-07-04gnu: Add r-dittoseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dittoseq): New variable.
2022-07-02gnu: r-tcgabiolinks: Update to 2.24.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
2022-07-02gnu: r-bionetstat: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
2022-07-02gnu: r-bgeedb: Update to 2.22.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
2022-07-02gnu: r-ggbio: Update to 1.44.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
2022-07-02gnu: r-rsubread: Update to 2.10.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
2022-07-02gnu: r-biosigner: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02gnu: r-ropls: Update to 1.28.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02gnu: r-genomicscores: Update to 2.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2. [propagated-inputs]: Add r-httr.
2022-07-02gnu: r-clusterprofiler: Update to 4.4.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
2022-07-02gnu: r-batchelor: Update to 1.12.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
2022-07-02gnu: r-matrixgenerics: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
2022-07-02gnu: r-zellkonverter: Update to 1.6.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
2022-07-02gnu: r-simplifyenrichment: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
2022-07-02gnu: r-rtracklayer: Update to 1.56.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
2022-07-02gnu: r-organismdbi: Update to 1.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
2022-07-02gnu: r-limma: Update to 3.52.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
2022-07-02gnu: r-ensembldb: Update to 2.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
2022-07-02gnu: r-restfulr: Update to 0.0.15.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15.
2022-07-01gnu: Add r-antiprofiles.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-antiprofiles): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-07-01gnu: Add r-annmap.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-annmap): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-07-01gnu: Add r-anf.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-anf): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-07-01gnu: Add r-anaquin.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-anaquin): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-06-30gnu: Add r-amaretto.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-amaretto): New variable.
2022-06-30gnu: Add r-amountain.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-amountain): New variable.
2022-06-30gnu: r-metap: Update to 1.8.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-metap): Update to 1.8. [propagated-inputs]: Add r-mathjaxr and r-qqconf.
2022-06-13gnu: r-nbpseq: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
2022-06-13gnu: r-restfulr: Update to 0.0.14.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
2022-06-12gnu: Add r-deconvr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
2022-06-12gnu: r-hdf5array: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
2022-06-12gnu: r-universalmotif: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
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