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2020-04-26gnu: Add r-motifbreakr....* gnu/packages/bioconductor.scm (r-motifbreakr): New variable. Roel Janssen
2020-04-26gnu: Add r-motifdb....* gnu/packages/bioconductor.scm (r-motifdb): New variable. Roel Janssen
2020-04-26gnu: Add r-pasilla....* gnu/packages/bioconductor.scm (r-pasilla): New variable. Roel Janssen
2020-04-26gnu: guile3.0-chickadee: Rename to guile3.0-chickadee....This avoids having to packages, both called guile-chickadee. * gnu/packages/game-development.scm (guile3.0-chickadee)[name]: Change from guile-chickadee to guile3.0-chickadee. Christopher Baines
2020-04-26gnu: Add tarsplitter....* gnu/packages/compression.scm (tarsplitter): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Lars-Dominik Braun
2020-04-26gnu: Add rav1e....* gnu/packages/video.scm (rav1e): New variable. * gnu/packages/rust-apps.scm (rust-cbindgen-0.12, rust-cargo-c): New variables. * gnu/packages/crates-io.scm: Various new packages and upgrades. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Leo Famulari
2020-04-26gnu: python-scanpy: Update to 1.4.6....* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6. [arguments]: Add another network based test to skip. [propagated-inputs]: Add python-tqdm. Efraim Flashner
2020-04-26gnu: python-publicsuffix2: Adjust for Guile 3.0....* gnu/packages/python-web.scm (python-publicsuffix2): Provide explicit destination in calls to FORMAT. Marius Bakke
2020-04-26gnu: nim: Adjust for Guile 3.0....* gnu/packages/nim.scm (nim)[arguments]: Provide explicit destination in calls to FORMAT. Marius Bakke
2020-04-26gnu: tpacpi-bat: Adjust for Guile 3.0....* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Provide explicit destination in calls to FORMAT. Marius Bakke
2020-04-26gnu: nmoldyn: Adjust for Guile 3.0....* gnu/packages/chemistry.scm (nmoldyn)[arguments]: Provide explicit destination in calls to FORMAT. Marius Bakke
2020-04-26gnu: calcurse: Adjust for Guile 3.0....* gnu/packages/calcurse.scm (calcurse)[arguments]: Provide explicit destination in calls to FORMAT. Marius Bakke
2020-04-26gnu: thinkfan: Adjust for Guile 3.0....* gnu/packages/linux.scm (thinkfan)[arguments]: Provide explicit destination in calls to FORMAT (destination is no longer optional with Guile 3). Marius Bakke
2020-04-26gnu: Add sylpheed....* gnu/packages/mail.scm (sylpheed): New variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com> Eric Brown
2020-04-26gnu: Add xarchiver....* gnu/packages/compression (xarchiver): New variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com> Raghav Gururajan
2020-04-26gnu: Add python-osc....* gnu/packages/python-xyz.scm (python-osc): New variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com> Giacomo Leidi
2020-04-26gnu: hugin: Update to 2019.2.0....* gnu/packages/photo.scm (hugin): Update to 2019.2.0. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com> Evan Straw
2020-04-26gnu: maradns: Fix cross compilation....* gnu/packages/dns.scm (maradns)[arguments]: Build make_32bit_tables for the host. Arun Isaac
2020-04-26gnu: perl-glib: Update to 1.3292....* gnu/packages/glib.scm (perl-glib): Update to 1.3292. Efraim Flashner
2020-04-25gnu: svt-av1: Update to 0.8.2....* gnu/packages/video.scm (svt-av1): Update to 0.8.2. Leo Famulari
2020-04-25gnu: arm-trusted-firmware: Update to 2.3....* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.3. [source]: Remove hdcp patch. * gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch: Remove patch. * gnu/local.mk: Update accordingly. Vagrant Cascadian
2020-04-26gnu: Add sbcl-stumpwm-globalwindows....* gnu/packages/wm.scm (sbcl-stumpwm-globalwindows): New variable. Oleg Pykhalov
2020-04-25gnu: pavucontrol: Fix icons....* gnu/packages/pulseaudio.scm (pavucontrol): Fix icons. [build-system]: Use glib-or-gtk-build-system instead of gnu-build-system. [inputs]: Add adwaita-icon-theme. Re-order inputs. Since the adwaita icon theme is hard-coded in the application, there is no choice for the user anyway. So added adwaita-icon-theme to inputs and changed build-system to glib-or-gtk to fix loading of icons. Raghav Gururajan
2020-04-25gnu: fontmanager: Update to 0.7.7....* gnu/packages/fontutils.scm (fontmanager): Update to 0.7.7. Boris A. Dekshteyn
2020-04-25gnu: python-webob: Update to 1.8.3...* gnu/packages/python-web.scm (python-webob): Update to 1.8.3. Holger Peters
2020-04-25gnu: python-pastedeploy: Update to 2.1.0...* gnu/packages/python-web.scm (python-pastedeploy): Update to 2.1.0. [arguments]: Add test-target. [native-inputs]: Replace python-nose with python-pytest and python-pytest-runner. Holger Peters
2020-04-25gnu: elixir: Update to 1.10.3....* gnu/packages/elixir.scm (elixir): Update to 1.10.3. Oskar Köök
2020-04-25gnu: flowee: Update to 2020.03.2...* gnu/packages/finance.scm (flowee): Update to 2020.03.2 TomZ
2020-04-25gnu: texlive-latex-pdfx: Fix typo....* gnu/packages/tex.scm (texlive-latex-pdfx)[description]: Fix typo. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Matthew Kraai
2020-04-25gnu: python-reportlib: Update to 3.5.42....* gnu/packages/pdf.scm (python-reportlib): Update to 3.5.42. Efraim Flashner
2020-04-25gnu: python-reportlib: Add missing libraries....* gnu/packages/pdf.scm (python-reportlib)[arguments]: Add 'use-system-libart' configure flag. Add custom phase to find libraries. [inputs]: Add libart-lgpl, font-curve-files. Efraim Flashner
2020-04-25gnu: Add osicat....* gnu/packages/lisp-xyz.scm (closicat, sbcl-osicat): New variables. Pierre Neidhardt
2020-04-24gnu: webkitgtk: Update to 2.28.2....* gnu/packages/webkit.scm (webkitgtk): Update to 2.28.2. Mark H Weaver
2020-04-24gnu: linux-libre@5.6: Update deblob scripts....* gnu/packages/linux.scm (deblob-scripts-5.6): Update to 5.6.7. Mark H Weaver
2020-04-24gnu: u-boot: Update to 2020.04....* gnu/packages/bootloaders (u-boot): Update to 2020.04. [native-inputs]: Replace sdl with sdl2. Co-authored-by: Vagrant Cascadian <vagrant@debian.org> Pierre Langlois
2020-04-25gnu: Add maradns....* gnu/packages/dns.scm (maradns): New variable. Arun Isaac
2020-04-24gnu: linux-libre@4.14: Update to 4.14.177....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.177. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver
2020-04-24gnu: linux-libre@4.9: Update to 4.9.220....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.220. (linux-libre-4.9-pristine-source): Update hash. Mark H Weaver
2020-04-24gnu: linux-libre@4.4: Update to 4.4.220....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.220. (linux-libre-4.4-pristine-source): Update hash. Mark H Weaver
2020-04-24gnu: pdfpc: Upgrade to 4.4.0...* gnu/packages/pdf.scm (pdfpc): Upgrade to 4.4.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Jack Hill
2020-04-24gnu: python-pytest-timeout: Update to 1.3.4....* gnu/packages/check.scm (python-pytest-timeout): Update to 1.3.4. [arguments]: Override check phase. [native-inputs]: Add PYTHON-PEXPECT. Marius Bakke
2020-04-24gnu: Add ktsuss....* gnu/packages/admin.scm (ktsuss): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Raghav Gururajan
2020-04-24gnu: spacefm: Add dependencies for extra functionality....* gnu/packages/lxde.scm (spacefm): Add dependencies for extra functionality. Adding these inputs and making required changes to build-system+arguments; provides icons, privilege-management and disk-management. Raghav Gururajan
2020-04-24gnu: guix: Update to 7dd0539....* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.7dd0539. Marius Bakke
2020-04-24gnu: biber: Downgrade to 2.11....Biber 2.12 is incompatible with biblatex 3.11, which is what's currently packaged. This is a followup to 41a010875ba4108e666f11fc111cf5bb5dcf5464. * gnu/packages/tex.scm (biber): Downgrade to 2.11. Ludovic Courtès
2020-04-24gnu: biber: Address test failures....* gnu/packages/patches/biber-sortinithash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tex.scm (biber)[source]: Use it. Ludovic Courtès
2020-04-24pack: 'guix pack -R' wrapper correctly reports exit code....Fixes <https://bugs.gnu.org/40816>. Reported by Jan (janneke) Nieuwenhuizen <janneke@gnu.org>. * gnu/packages/aux-files/run-in-namespace.c (main): In the 'default' case, check 'WIFEXITED (status)' and exit with the corresponding code in that case. Exit with 255 in other cases. * tests/guix-pack-relocatable.sh: Add test. Ludovic Courtès
2020-04-24gnu: llvm: Add 10.0.0....* gnu/packages/llvm.scm (llvm-10, clang-runtime-10, clang-10) (clang-toolchain-10, llvm-9, clang-runtime-9, clang-9) (clang-toolchain-9): New variables. (llvm, clang, clang-runtime, clang-toolchain): Redefine as aliases to the '-9' bindings. * gnu/packages/patches/clang-10.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2020-04-24gnu: Add r-rxnat....* gnu/packages/cran.scm (r-rxnat): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Naga Malleswari
2020-04-24gnu: Add r-rcdd....* gnu/packages/cran.scm (r-rcdd): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Naga Malleswari