summaryrefslogtreecommitdiff
path: root/gnu
AgeCommit message (Expand)Author
2022-05-31gnu: Remove pyicoteo....* gnu/packages/bioinformatics.scm (pyicoteo): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-pbcore....* gnu/packages/bioinformatics.scm (python2-pbcore): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-pyfaidx....* gnu/packages/bioinformatics.scm (python2-pyfaidx): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-screed....* gnu/packages/bioinformatics.scm (python2-screed): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove miso....* gnu/packages/bioinformatics.scm (miso): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-warpedlmm....* gnu/packages/bioinformatics.scm (python2-warpedlmm): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove poretools....* gnu/packages/bioinformatics.scm (poretools): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-dendropy....* gnu/packages/bioinformatics.scm (python2-dendropy): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove bamm....* gnu/packages/bioinformatics.scm (bamm): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-pybedtools....* gnu/packages/bioinformatics.scm (python2-pybedtools): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-htseq....* gnu/packages/bioinformatics.scm (python2-htseq): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove pepr....* gnu/packages/bioinformatics.scm (pepr): Delete variable. Maxim Cournoyer
2022-05-31gnu: tetoolkit: Update to 2.2.1b....* gnu/packages/bioinformatics.scm (tetoolkit): Update to 2.2.1b. [python]: Delete argument. [phases]: Delete trailing #t. {make-writable}: Delete phase. {adjust-requirements}: New phase. {patch-invocations}: Use search-input-file. {wrap-program}: Use search-input-file. [inputs]: Remove python2-argparse. Replace python2-pysam with python-pysam. [home-page]: Update URL. Maxim Cournoyer
2022-05-31gnu: Remove python2-pybigwig....* gnu/packages/bioinformatics.scm (python2-pybigwig): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove ribodiff....* gnu/packages/bioinformatics.scm (ribodiff): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove grit....* gnu/packages/bioinformatics.scm (grit): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-fastalite....* gnu/packages/bioinformatics.scm (python2-fastalite): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-pyaudio....* gnu/packages/audio.scm (python2-pyaudio): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove raul-devel....* gnu/packages/audio.scm (raul-devel): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove raul....* gnu/packages/audio.scm (raul): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove ingen....* gnu/packages/music.scm (ingen): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-pyalsaaudio....* gnu/packages/audio.scm (python2-pyalsaaudio): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove graphios....* gnu/packages/admin.scm (graphios): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-langkit....* gnu/packages/ada.scm (python2-langkit): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python-pytest-runner-2....* gnu/packages/check.scm (python-pytest-runner-2): Delete variable. (python2-pytest-runner): Likewise. Maxim Cournoyer
2022-05-31gnu: icecat: Update to 91.10.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2022-31736, CVE-2022-31737, CVE-2022-31738, CVE-2022-31739, CVE-2022-31740, CVE-2022-31741, CVE-2022-31742, and CVE-2022-31747. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. Mark H Weaver
2022-05-31gnu: ungoogled-chromium: Update to 102.0.5005.61-3....* gnu/packages/chromium.scm (%ungoogled-revision): Bump to latest. (%ungoogled-origin): Update hash. Marius Bakke
2022-05-31gnu: python-sip-4: Update to 4.19.25....* gnu/packages/qt.scm (python-sip-4): Update to 4.19.25. Efraim Flashner
2022-05-31gnu: guile-ac-d-bus: Run test suite....* gnu/packages/patches/guile-ac-d-bus-fix-tests.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/guile-xyz.scm (guile-ac-d-bus) [source]: Apply patch. [phases]{check}: New phase. [native-inputs]: Add bash-minimal. Maxim Cournoyer
2022-05-31gnu: guile-ac-d-bus: Build and install info manual....* gnu/packages/guile-xyz.scm (guile-ac-d-bus) [arguments]: Use gexps. [phases]{build-doc, install-doc}: New phases. [native-inputs]: Add texinfo. Maxim Cournoyer
2022-05-31gnu: python-distributed: Update to 2022.05.2....* gnu/packages/python-science.scm (python-distributed): Update to 2022.05.2. [arguments]: Remove 'sanity-check phase; adjust 'check phase. [propagated-inputs]: Add python-urllib3. [native-inputs]: Add python-pytest-timeout and python-flaky. Ricardo Wurmus
2022-05-31gnu: r-haven: Fix build....* gnu/packages/cran.scm (r-haven)[arguments]: Adjust 'unbundle-readstat phase. Reported-by: Jonas Freimuth. Ricardo Wurmus
2022-05-31gnu: python-fsspec: Update to 2022.5.0....* gnu/packages/python-xyz.scm (python-fsspec): Update to 2022.5.0. Ricardo Wurmus
2022-05-31image: Add fat32 support....* gnu/build/image.scm (make-vfat-image): Pass fs-bits as an argument and force 1kb logical sector size only if "ESP" flag is set. (make-partition-image): Add "fat32" partition type, support explicit "fat16" type with vfat alias. * gnu/system/image.scm (partition->dos-type partition): Return file system IDs for "fat16" and "fat32" partitions. (partition->gpt-type partition): Ditto. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Pavel Shlyak
2022-05-31gnu: emacs-helpful: Update to 0.19...* gnu/packages/patches/emacs-helpful-docstring-test.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.19. [source]: Use the patch. * gnu/local.mk (dist_patch_DATA): Register the patch. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> yarl baudig
2022-05-30gnu: gandi.cli: Fix by downgrading python-click....* gnu/packages/python-xyz.scm (python-click-7): New variable. * gnu/packages/networking.scm (gandi.cli)[inputs]: Depend on python-click-7. Pierre Langlois
2022-05-30gnu: python-click@8: Remove redundant package....The python-click package is already version 8. * gnu/packages/python-xyz.scm (python-click-8): Remove variable. (python-proselint)[propagated-inputs]: Depend on python-click. Pierre Langlois
2022-05-30gnu: python-scanpy: Update to 1.9.1....* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.9.1. [arguments]: Add phase 'set-numba-cache-dir; disable more broken tests. [propagated-inputs]: Add python-dask and python-session-info; replace python-louvain-0.7 with python-louvain. Ricardo Wurmus
2022-05-30gnu: python-leidenalg: Update to 0.8.10....* gnu/packages/graph.scm (python-leidenalg): Update to 0.8.10. [arguments]: Patch setup.py. [native-inputs]: Remove python-setuptools; add python-setuptools-scm. Ricardo Wurmus
2022-05-30gnu: python-dask: Update to 2022.05.2....* gnu/packages/python-xyz.scm (python-dask): Update to 2022.05.2. Ricardo Wurmus
2022-05-30gnu: Add python-session-info....* gnu/packages/python-xyz.scm (python-session-info): New variable. Ricardo Wurmus
2022-05-30gnu: non-sequencer: Update to 1.9.5-5.257ec59....* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-5.257ec59. [source]: Use fork as old repository is defunct; use git-file-name and git-version. [arguments]: Remove python-2; add phase to replace bundled waf. [native-inputs]: Add python-waf. (non-session-manager)[native-inputs]: Add python-waf. (non-mixer)[inputs]: Add lv2 and lilv. [native-inputs]: Add python-waf. (non-timeline)[native-inputs]: Add python-waf. Ricardo Wurmus
2022-05-30gnu: quodlibet: Correct wrappers....* gnu/packages/music.scm (quodlibet)[#:phases]: Rename ‘wrap-gi-typelib’ to ‘wrap-extra-paths’. Use ‘=’ for GI_TYPELIB_PATH. Add ‘GST_PLUGIN_SYSTEM_PATH’ with suffix binding. Liliana Marie Prikler
2022-05-30gnu: calceph: Add 'release-monitoring-url' property....* gnu/packages/astronomy.scm (calceph)[properties]: New field. Ludovic Courtès
2022-05-30gnu: Add calceph....* gnu/packages/astronomy.scm (calceph): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher
2022-05-30gnu: emacs-vterm: Update to 0.0.1-1.b447235....* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0.0.1-1.b447235. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2022-05-30gnu: rspamd: Update to 3.2...* gnu/packages/mail.scm (rspamd): Update to 3.2 I also added a new build option, that changes the LOCAL_CONFDIR variable to /etc/rspamd. This allows for rspamd configuration via the /etc/rspamd/local.d and override.d directories, which by default were located in the PREFIX which is in /gnu/store. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ykonai
2022-05-30gnu: pre-commit: Update to 2.19.0....* gnu/packages/version-control.scm (pre-commit): Update to 2.19.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> jgart
2022-05-30gnu: xpad: Update to 5.8.0....* gnu/packages/gnome.scm (xpad): Update to 5.8.0. [inputs]: Replace gtksourceview-3 with gtksourceview. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Rene Saavedra
2022-05-30gnu: casync: Update to 99559cd1....* gnu/packages/sync.scm (casync): Update to 99559cd1. [source]: Remove patch. [arguments]: Fix installation. [native-inputs]: Add python. [inputs]: Add eudev. * gnu/packages/patches/casync-renameat2-declaration.patch: Delete file. * gnu/local.mk: Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan