| Age | Commit message (Expand) | Author |
|---|
| 2023-01-09 | import/cran: Fix Bioconductor updater....* guix/import/cran.scm (latest-bioconductor-release): Use LATEST-VERSION
instead of VERSION, which is always #F.
| Ricardo Wurmus |
| 2022-12-31 | import/cran: Depend on gfortran if .f files are detected too....There was an inconsistency between tarball-needs-fortran? and
directory-needs-fortran?.
* guix/import/cran.scm (directory-needs-fortran?): Match .f files too.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Use multiple values instead of a list of lists....* guix/import/cran.scm (source-dir->dependencies): Return multiple values.
(description->package): Bind two values.
| Ricardo Wurmus |
| 2022-12-31 | import/cran: Always operate on source directory....Extracting the source tarball multiple times is very slow and a
speedup of >2x (without network I/O) can be achieved by coalescing all
NEEDS-X? functions into a single one, which extracts a tarball only once.
* guix/import/cran.scm (tarball-needs-fortran?): Remove unused function.
(needs-fortran?): Ditto.
(tarball-files-match-pattern?): Ditto.
(tarball-needs-zlib?): Ditto.
(needs-zlib?): Ditto.
(tarball-needs-pkg-config?): Ditto.
(needs-pkg-config?): Ditto.
(source-dir->dependencies): New function.
(source->dependencies): New function.
(description->package): Use it.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Translate more package dependencies....Assumes we use package variable names, not package specification names.
* guix/import/cran.scm (invalid-packages): Add more invalid names.
(transform-sysname): Transform more package names.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Allow overriding tarball download....* guix/import/cran.scm (description->package): Accept new keyword argument
DOWNLOAD-SOURCE.
(cran->guix-package): Ditto.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Allow overriding description fetch function....* guix/import/cran.scm (cran->guix-package): New keyword argument
FETCH-DESCRIPTION.
| Lars-Dominik Braun |
| 2022-12-31 | import/cran: Allow custom license prefix....* guix/import/cran.scm (string-licenses): Add license-prefix argument.
(string->license): Ditto.
(description->package): Ditto.
(cran->guix-package): Ditto.
(cran-recursive-import): Ditto.
* guix/scripts/import/cran.scm (%options): Add new option -p/--license-prefix.
(show-help): Document it.
(parse-options): Pass it to importer.
* doc/guix.texi (Invoking guix import): Document it.
| Lars-Dominik Braun |
| 2022-12-31 | import/utils: Pass all arguments through to package builder....Individual importer may have additional arguments.
* guix/import/utils.scm (recursive-import): Patch all keyword arguments
through to repo->guix-package.
* guix/import/cran.scm (cran->guix-package): Add #:allow-other-keys.
* guix/import/crate.scm (crate->guix-package): Ditto.
* guix/import/egg.scm (egg->guix-package): Ditto.
* guix/import/elm.scm (elm->guix-package): Ditto.
* guix/import/gem.scm (gem->guix-package): Ditto.
* guix/import/gnu.scm (gnu->guix-package): Ditto.
* guix/import/go.scm (go-module->guix-package): Ditto.
(go-module-recursive-import): Ditto.
* guix/import/hackage.scm (hackage->guix-package): Ditto.
(hackage-recursive-import): Ditto.
* guix/import/hexpm.scm (hexpm->guix-package): Ditto.
* guix/import/minetest.scm (minetest->guix-package): Ditto.
(minetest-recursive-import): Ditto.
* guix/import/opam.scm (opam->guix-package): Ditto.
* guix/import/pypi.scm (pypi->guix-package): Ditto.
* guix/import/stackage.scm (stackage->guix-package): Ditto.
(stackage-recursive-import): Ditto.
* guix/import/texlive.scm (texlive->guix-package): Ditto.
| Lars-Dominik Braun |
| 2022-12-26 | import: Issue error-message if version is given....These importer don't support importing a specific version, thus the updater
does neither. Issue an error message in case version is given.
* guix/import/cpan.scm (latest-release),
guix/import/elpa.scm (latest-release),
guix/import/hackage.scm (latest-release),
guix/import/minetest.scm (latest-minetest-release),
guix/import/opam.scm (latest-release): Add #:version argument,
issue error if version is given.
* guix/import/cran.scm (latest-cran-release): Same.
(latest-bioconductor-release) Same. <version>: rename to <latest-version>.
* guix/import/stackage.scm (latest-lts-release): For each generated updater,
add #:version argument and issue error if version is given.
| Hartmut Goebel |
| 2022-12-26 | upstream-updater: Rename record field....The next commits will make the functions, which are currently importing the
latest version of a package, change into importing the latest or a given
version of the package (for those updaters supporting specifying a version).
Thus the name ‘latest‘ is no longer appropriate.
* guix/upstream.scm (upstream-updater) Rename field [latest] to
[import]. (lookup-updater, package-latest-release) Adjust fieldname
accordingly.
* guix/gnu-maintenance.scm (%gnu-updater, %gnu-ftp-updater,
%savannah-updater, %sourceforge-updater, %xorg-updater,
%kernel.org-updater, %generic-html-updater),
guix/import/cpan.scm (%cpan-updater),
guix/import/cran.scm (%cran-updater, %bioconductor-updater),
guix/import/crate.scm (%crate-updater),
guix/import/egg.scm (%egg-updater),
guix/import/elpa.scm (%elpa-updater),
guix/import/gem.scm (%gem-updater),
guix/import/git.scm (%generic-git-updater),
guix/import/github.scm (%github-updater),
guix/import/gnome.scm (%gnome-updater),
guix/import/hackage.scm (%hackage-updater),
guix/import/hexpm.scm (%hexpm-updater),
guix/import/kde.scm (%kde-updater),
guix/import/launchpad.scm (%launchpad-updater),
guix/import/minetest.scm (%minetest-updater),
guix/import/opam.scm (%opam-updater),
guix/import/pypi.scm (%pypi-updater),
guix/import/stackage.scm (%stackage-updater),
tests/import-github.scm (found-sexp)
tests/transformations.scm ("options->transformation, with-latest"):
Adjust fieldname accordingly.
| Hartmut Goebel |
| 2022-12-19 | import/cran: Add more mappings from sysnames to Guix package names....* guix/import/cran.scm (transform-sysname): Add more mappings.
| Ricardo Wurmus |
| 2022-11-29 | import/cran: Add package name mapping....* guix/import/cran.scm (transform-sysname): Add mapping from sqlite3 to sqlite.
| Ricardo Wurmus |
| 2022-11-24 | guix: Upgrade to Bioconductor 3.16....* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.16.
* guix/import/cran.scm (%bioconductor-version): Same.
| zimoun |
| 2022-11-16 | import/cran: Add package mapping for freetype....* guix/import/cran.scm (transform-sysname): Map "freetype2" to "freetype".
| Ricardo Wurmus |
| 2022-11-11 | import/cran: Add package name mapping for "booktabs"....* guix/import/cran.scm (transform-sysname): Add mapping for "booktabs".
| Ricardo Wurmus |
| 2022-11-11 | import/cran: Add more strings to the list of invalid packages....* guix/import/cran.scm (invalid-packages): Add "c++", "c++17", and
"posix.1-2001" to list of invalid packages.
| Ricardo Wurmus |
| 2022-09-28 | import/cran: Process more complex license strings....* guix/import/cran.scm (string->license): Add more match clauses.
(string->licenses): Split license conjunctions at "|" and apply
string->license on each license.
(description->package): Use string->licenses.
| Ricardo Wurmus |
| 2022-09-28 | import/cran: Use beautify-synopsis....* guix/import/cran.scm (description->package): Use beautify-synopsis.
| Ricardo Wurmus |
| 2022-09-28 | import/cran: Transform external package names to Guix names....* guix/import/cran.scm (transform-sysname): New procedure.
(description->package): Use it on inputs that are derived from "sysdepends".
| Ricardo Wurmus |
| 2022-09-28 | import/cran: Add more strings to invalid-packages....* guix/import/cran.scm (invalid-packages): Add none, windows, and xcode.
| Ricardo Wurmus |
| 2022-09-20 | import/cran: description->package: Use COND and computed booleans....* guix/import/cran.scm (description->package): Use COND with previously
computed booleans instead of using CASE on REPOSITORY.
| Ricardo Wurmus |
| 2022-09-20 | import/cran: download: Accept optional REF argument....* guix/import/cran.scm (download): Accept REF argument for git downloads.
| Ricardo Wurmus |
| 2022-05-28 | guix: Upgrade to Bioconductor 3.15....* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.15.
* guix/import/cran.scm (%bioconductor-version): Same.
| Ricardo Wurmus |
| 2022-03-07 | import: cran: Return multiple values for unknown packages....Partly fixes <https://bugs.gnu.org/44115>.
* guix/import/pypi.scm (cran->guix-package): Return 'values'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| zimoun |
| 2022-01-20 | guix: import/cran: Cast booleans....This is needed due to a change in file-hash*.
* guix/import/cran.scm (description->package): Ensure that GIT? and HG? are
booleans.
| Ricardo Wurmus |
| 2022-01-06 | import: Factorize file hashing....* guix/import/cran.scm (vcs-file?, file-hash): Remove procedures.
(description->package): Use 'file-hash*' instead.
* guix/import/elpa.scm (vcs-file?, file-hash): Remove procedures.
(git-repository->origin, elpa-package->sexp): Use 'file-hash* instead'.
* guix/import/go.scm (vcs-file?, file-hash): Remove procedures.
(git-checkout-hash): Use 'file-hash*' instead.
* guix/import/minetest.scm (file-hash): Remove procedure.
(make-minetest-sexp): Use 'file-hash*' instead.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Sarah Morgensen |
| 2021-11-17 | Merge branch 'master' into core-updates-frozen | Ludovic Courtès |
| 2021-11-11 | import: cran: Allow imports of a specific version....* guix/import/cran.scm (download): Handle the case where URL is a list.
(fetch-description-from-tarball): New procedure.
(fetch-description): Add #:version parameter. Honor it when REPOSITORY
is 'cran. Use 'fetch-description-from-tarball' when REPOSITORY is
'bioconductor.
(description->package): SOURCE-URL may now be a list.
(cran->guix-package): Pass VERSION to 'fetch-description'.
(cran-recursive-import): Add #:version parameter.
* guix/scripts/import/cran.scm (guix-import-cran): Expect a spec rather
than a mere package name.
* doc/guix.texi (Invoking guix import): Document it.
| Ludovic Courtès |
| 2021-11-08 | Merge remote-tracking branch 'origin/master' into core-updates-frozen | Efraim Flashner |
| 2021-11-07 | guix: Upgrade to Bioconductor 3.14....* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.14.
* guix/import/cran.scm (%bioconductor-version): Same.
| Ricardo Wurmus |
| 2021-10-31 | Merge remote-tracking branch 'origin/master' into core-updates-frozen | Efraim Flashner |
| 2021-10-28 | import: cran: Use the standard diagnostic procedures....* guix/import/cran.scm (bioconductor-packages-list)
(fetch-description): Use 'warning' instead of 'format'.
| Ludovic Courtès |
| 2021-07-11 | import: cran: Emit new-style package inputs....* guix/import/cran.scm (format-inputs): Emit symbols or
'specification->package' calls.
(maybe-inputs): Wrap in 'list' instead of 'quasiquote'.
* tests/cran.scm ("description->package"): Adjust accordingly.
| Ludovic Courtès |
| 2021-06-05 | guix: Update to Bioconductor 3.13....* guix/build-system/r.scm (bioconductor-uri): Update version.
* guix/import/cran.scm (%bioconductor-version): Update.
| Ricardo Wurmus |
| 2021-03-01 | import/cran: Fix detection of Fortran files....This fixes a bug whereby the Guix importer considers files like .f.* to be
Fortran files.
The expression "\\.f(90|95)?" would match a lot of files containing ".f"
although they are not Fortran files. Instead we should only consider files
with this *suffix*.
* guix/import/cran.scm (directory-needs-fortran?): Only check for suffixes.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2021-01-20 | import/cran: Add more invalid package names to ignore....* guix/import/cran.scm (invalid-packages): Add more names.
| Ricardo Wurmus |
| 2020-12-22 | import/cran: Add input style "specification"....* guix/import/cran.scm (%input-style): New parameter.
(format-inputs): Use it.
* guix/scripts/import/cran.scm (guix-import-cran): Set the %input-style
parameter.
(%options): Add "--style" option.
* doc/guix.texi (Invoking guix import): Document it.
| Ricardo Wurmus |
| 2020-12-15 | import: cran: Use CRAN’s canonical URL as home-page....* guix/import/cran.scm (%cran-canonical-url): New variable.
(description->package): Construct home-page using canonical URL.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| Lars-Dominik Braun |
| 2020-12-12 | import/cran: Abort with error message when recursive import fails....Previously, after a failed recursive import "guix import" would signal
success.
* guix/import/cran.scm (cran->guix-package): Raise a condition when all
repositories have been exhausted.
* guix/scripts/import/cran.scm (guix-import-cran): Handle errors.
| Ricardo Wurmus |
| 2020-12-09 | import: cran: Update the Bioconductor version to 3.12....* guix/import/cran.scm (%bioconductor-version): Set to 3.12.
* guix/build-system/r.scm (bioconductor-uri): Update to 3.12.
| Roel Janssen |
| 2020-12-04 | import/cran: Fix calls to CRAN->GUIX-PACKAGE....* guix/import/cran.scm (cran->guix-package, latest-bioconductor-release):
Invoke CRAN->GUIX-PACKAGE with #:REPO keyword argument.
| Ricardo Wurmus |
| 2020-12-02 | import: utils: 'recursive-import' accepts an optional version parameter....This adds a key VERSION to 'recursive-import' and moves the parameter REPO to
a key. This also changes all the places that rely on 'recursive-import'.
* guix/import/utils.scm (recursive-import): Add the VERSION key. Make REPO a
key.
(package->definition): Add optional 'append-version?'.
* guix/scripts/import/crate.scm (guix-import-crate): Add the VERSION key.
* guix/import/crate.scm (crate->guix-package): Add the VERSION key.
(crate-recursive-import): Pass VERSION to recursive-import, remove now
unnecessary code.
* guix/import/cran.scm (cran->guix-package, cran-recursive-import): Change the
REPO parameter to a key.
* guix/import/elpa.scm (elpa->guix-package, elpa-recursive-import): Likewise.
* guix/import/gem.scm (gem->guix-package, recursive-import): Likewise.
* guix/import/opam.scm (opam-recurive-import): Likewise.
* guix/import/pypi.scm (pypi-recursive-import): Likewise.
* guix/import/stackage.scm (stackage-recursive-import): Likewise.
* guix/scripts/import/cran.scm (guix-import-cran): Likewise.
* guix/scripts/import/elpa.scm (guix-import-elpa): Likewise.
* tests/elpa.scm (eval-test-with-elpa): Likewise.
* tests/import-utils.scm (recursive-import): Likewise.
Co-authored-by: Hartmut Goebel <h.goebel@crazy-compilers.com>
| Martin Becze |
| 2020-07-03 | upstream: Define 'url-predicate' and use it....* guix/upstream.scm (url-predicate): New procedure.
(url-prefix-predicate): Define in terms of 'url-predicate'.
* guix/import/cpan.scm (cpan-package?): Use 'url-predicate'.
* guix/import/cran.scm (cran-package?)
(bioconductor-package?)
(bioconductor-data-package?)
(bioconductor-experiment-package?): Likewise.
* guix/import/crate.scm (crate-package?): Likewise.
* guix/import/elpa.scm (package-from-gnu.org?): Likewise.
* guix/import/hackage.scm (hackage-package?): Likewise.
* guix/import/pypi.scm (pypi-package?): Likewise.
* guix/import/gem.scm (gem-package?): Use 'url-prefix-predicate'.
| Ludovic Courtès |
| 2020-06-13 | guix: Update to Bioconductor 3.11....* guix/build-system/r.scm (bioconductor-uri): Use new URL.
* guix/import/cran.scm (%bioconductor-version): Update to 3.11.
| Ricardo Wurmus |
| 2020-05-13 | guix: cran: Add missing default R package....* guix/import/cran.scm (default-r-packages): Add "datasets" to the list of
default R packages.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| pimi |
| 2020-03-25 | import/cran: Import missing module....This is a follow-up to commit b005c240bb5e436ffe9d55c2dd75c9af85aa0fdd.
Reported-by: Ludovic Courtès <ludo@gnu.org>
* guix/import/cran.scm: Import (guix ui) module.
| Ricardo Wurmus |
| 2020-03-25 | import/cran: Support importing from Mercurial repositories....* guix/import/cran.scm (download): Accept keyword #:method; add case for hg
method.
(fetch-description): Handle hg repository.
(description->package): Add cases for hg repositories and update call of
DOWNLOAD procedure.
(cran->guix-package): Retry importing from Bioconductor when hg import failed.
| Ricardo Wurmus |
| 2020-03-07 | import/cran: Add vignette builder to native inputs....* guix/import/cran.scm (needs-knitr?): New procedure.
(description->package): Use it.
| Ricardo Wurmus |
| 2020-01-16 | import: cran: Avoid uses of '@@' in the tests....* guix/import/cran.scm (description->alist, description->package): Export.
<top level>: Set! 'listify'.
* tests/cran.scm (description-alist, "description->package"): Remove use
of '@@' to access the relevant bindings.
| Ludovic Courtès |
